mRNA_H-elongata_contig76722.15343.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: D7FLP3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI) HSP 1 Score: 211 bits (536), Expect = 6.120e-57 Identity = 133/260 (51.15%), Postives = 169/260 (65.00%), Query Frame = 1
Query: 4 SLRRARALGKAL-EAGD-VKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE--EERRLMYVGMTRAKARLFLSCRDERTEI-------TPTGLKRRGASPSRFIADIPKSIVRTIDR 750
S+ R RAL +A E GD ++GP+KAQ+ +L +FA LLC+LRV +ATQ +PEL R +++ T M+++V TLSTTGP+EG DRW NV+ELERAA++ +FS AL FL E +L+ +D E G + S P VK P IQ+MTVHASKGLEFDTVF+ G EEGTFPM + DDE EERRLMYVGMTRAKARLFL+ R +R TG + A SRF+ DIP++IVRTID+
Sbjct: 693 SVLRVRALREAFSERGDEIEGPTKAQANKLRVFARLLCRLRVASATQTVPELLRTVLEETGMRKHVTETLSTTGPAEGEDRWQNVVELERAASNPKFSGTAGDGALVAFLNEVSLVGGDDPEXXXXXXXXXXXXXXXXXXXGGQASPV--PGVKPPMIQLMTVHASKGLEFDTVFVAGCEEGTFPM-KDTTDDEMDEERRLMYVGMTRAKARLFLTWRRKRMVFGQSWGKRDKTGAQIMDADRSRFLDDIPRNIVRTIDK 949
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A835Z3L0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L0_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.790e-27 Identity = 101/280 (36.07%), Postives = 141/280 (50.36%), Query Frame = 1
Query: 1 VSLRRARALGKALEAGDVKGPS-KAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLS------TTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLR--------------KDIDDEEERRLMYVGMTRAKARLFLSCRDERTEITPTG---------LKRRGASPSRFIADIPKS-IVRTID 747
VSLRR AL A + P K +++LA FA LL L+ +A + + +V TDM+EYV S G +G +RW NV+EL R+A + A L+A FL E ALM ++A R G G S P +++MT+HASKGLEFDTVF+ G EEGT P+ R +++ EERRLMYV +TRAK+RLF+S R T ++ G ++ A PSR++ D+PKS +V+ +D
Sbjct: 753 VSLRRVAAL----RASALTTPRLKPLTRKLADFASLLVSLKQRSAQGTVAAVLEHLVAITDMEEYVKRARSGDPDPKAGGLDKGEERWGNVVELVRSAERTSAAGAAGLAA---FLAEVALMGGDEAPRSG--------------GSGGPDSDSDSPAAVSEVVRLMTIHASKGLEFDTVFIVGCEEGTLPLERGGGYKNRGGXXXXXXXVEEAEERRLMYVAITRAKSRLFMSWRRTLTILSGAGADGDAGGGGMRCIDAYPSRYLEDLPKSGVVKHLD 1011
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A0F9I4L6_9ZZZZ (DNA helicase (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9I4L6_9ZZZZ) HSP 1 Score: 114 bits (285), Expect = 3.730e-24 Identity = 91/252 (36.11%), Postives = 125/252 (49.60%), Query Frame = 1
Query: 85 LAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRK-DIDD----EEERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGAS--PSRFIADIPKSIVRTIDRR-TATMSRELGNRHPQGAAADRV 816
L F GLL +L VA + + EL ++D T +EY++G + P +G +RW NV EL A ++ + AL +FL++ AL++ D E K + ++T+HA+KGLEF TVF+ G+EEG P +R + D EEERRL YVGMTRAK L+L R R TG G PSRF+ADIP ++ +R T T+ L RH GAAA V
Sbjct: 311 LLRFLGLLNELIAVAKKESLSELLDTVIDRTGYREYLLGEERGSLP-DGEERWENVQELRAVAA--QYDELKPEHALPSFLEDAALITDVDEYDE-----------------------------KADAVTLITLHAAKGLEFPTVFIAGLEEGLLPHMRSLESGDPAQLEEERRLCYVGMTRAKEHLYL-IRAFRRSFGRTGAGFGGGHNPPSRFLADIPPELIAQPERADTPTL---LPQRHRYGAAAQPV 526
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: UPI001AC16E27 (ATP-dependent DNA helicase PcrA n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001AC16E27) HSP 1 Score: 114 bits (285), Expect = 6.000e-24 Identity = 94/261 (36.02%), Postives = 127/261 (48.66%), Query Frame = 1
Query: 79 KRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDD---EEERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVR------TIDRRTATM----SRELGNRHPQGAAADRVWR 822
K L FA LL LR V + + +P+L I+ T EY+ G EG DRW NV EL RA +F+ A T +AL +L+E AL++ D R+ ++ P + MT+H++KGLE+ VF+ G+EEG FP R D EEERRL YVG+TRAK RL+L RT T PSRF+ADIP+ ++ T DRR A+ +R++G A RV R
Sbjct: 473 KVLLAFAKLLDDLRAVQSEKNLPDLIDMIITRTAFDEYIRD-----GTEEGEDRWGNVQELRRAVK--KFAGAPTETALPQYLEEVALIADIDTLRDDQD---------------------------APAL--MTLHSAKGLEYAVVFIIGLEEGLFPHSRALEDPAQMEEERRLCYVGITRAKQRLYLVNAFRRT----TYGNSEANDPSRFLADIPRELLAAQSGRTTDDRRPASARARSARDMGEDFDDDVAPRRVSR 693
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A3L7W6F8_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7W6F8_9CHLR) HSP 1 Score: 113 bits (282), Expect = 1.600e-23 Identity = 99/280 (35.36%), Postives = 139/280 (49.64%), Query Frame = 1
Query: 46 GDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE---EERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVRTIDRRTATMSRELGNRHPQGAAADRVWRDLRSESPRRRRGGEWGEG 876
G+V G LA A ++ +LR AT +PEL A+ T ++ + L++ GP EG +RW N+LEL ++ RF + L AL+ FL+ETAL++ +D S E R+ ++T+HA+KGLE+ TVF++G+ EG FP R +D E EERRL YVG+TRAK RL LS R G +PSRF+ +IP ++ ID T + E G+ + RV R RSE GG W EG
Sbjct: 493 GEVPGLMPRAKSALASVAAIVDRLRDRVATLDLPELLDAVYGDTGLRAH----LASEGP-EGEERWQNLLELRGISS--RFLELAPLDALDRFLEETALVADQDQLDTSAE-----------------------------RVTLITLHAAKGLEWPTVFISGLSEGLFPHSRAIMDHEQMEEERRLCYVGITRAKRRLVLSYAIRR------GWGDGDGAPSRFLDEIPPELLE-ID----TDAAERGDGETSFGRS-RV-RGFRSERSALGGGGAWREG 723
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A3L7W1W5_9CHLR (DNA helicase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7W1W5_9CHLR) HSP 1 Score: 112 bits (279), Expect = 3.820e-23 Identity = 95/283 (33.57%), Postives = 138/283 (48.76%), Query Frame = 1
Query: 46 GDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE---EERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVRTIDRRTATMSRELGNRHPQGAAADRVWRDLRSESPRRRRGGEWGEGGSD 885
G+++G S LA A ++ +LR A +PEL A+ T ++ + L+ G EG +RW N+LEL A RF + + L AL+ FL+ETAL++ +DA V L R+ ++T+HA+KGLE+ VF++G+ EG FP R D E EERRL YVG+TRAKARL+LS R+ G +PSRF+ +IP+ ++ + + E R + AA R R + GG W EG D
Sbjct: 491 GELQGISPRARTALAGVAAIVERLRSRLALVDLPELLDAVYSETGLRAH----LAAEGV-EGEERWANLLELRGIAG--RFLELEPLDALDRFLEETALVADQDALE-----------------------------VDLDRVTLITLHAAKGLEWPAVFISGLTEGLFPHSRALEDREQMEEERRLCYVGITRAKARLYLSYALRRSWGAGDG------APSRFLEEIPEELLESAN--------EDDPRTGEAAAFGRGARGFAAARGGIGGGGAWREGSGD 723
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A3L7VUJ6_9CHLR (DNA helicase n=1 Tax=Candidatus Aquidulcis sp. TaxID=2802963 RepID=A0A3L7VUJ6_9CHLR) HSP 1 Score: 110 bits (274), Expect = 7.060e-23 Identity = 90/271 (33.21%), Postives = 137/271 (50.55%), Query Frame = 1
Query: 46 GDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE---EERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVRTI---DRRTATMSR----ELGNRHPQ-GAAADRVWRD 825
G+V G + K LA G++ +LR A +PEL A+ T ++ + L++ G +G +RW N+LEL A RF + + L AL+ F++ETAL++ +D+ + E R+ ++T+HA+KGLE+ TVF++G+ EG FP R +D+E EERRL YVG+TRAK RL L+ R G+ PSRF+A+IP ++ D RT +R G R + G A+ WR+
Sbjct: 97 GEVLGAAPKARKALAEVDGMISRLRGRLALIELPELLDAVYSETGLRAH----LASEG-IDGEERWANLLELRGIAG--RFLELEPLDALDRFIEETALVADQDSIEDESE-----------------------------RVTLITMHAAKGLEWPTVFISGLTEGLFPHSRALMDEEQMEEERRLCYVGITRAKRRLTLTYAIRRGWGDGEGV------PSRFLAEIPDELLEVANDEDPRTDGTTRFGRGVAGYRSARSGFASGEAWRE 325
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A535RN30_9CHLR (DNA helicase n=2 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A535RN30_9CHLR) HSP 1 Score: 110 bits (276), Expect = 8.750e-23 Identity = 95/281 (33.81%), Postives = 122/281 (43.42%), Query Frame = 1
Query: 73 QSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGT----LSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDEE---ERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSI--VRTIDRR----------TATMSRELGNRHPQG---AAADRVWRDLRSESPRR 849
Q + L FA LL LR +A T + L IV + Y+ G T G EG +RW NVLEL A +S+ L FL+E AL+S D+ RE P + ++T+HA KGLEF VFLTG+EEG FP R +EE ERRL YVG+TRAK R +L+ RT T +PSRF+ ++P VR R+ T RE R Q A WR ++PRR
Sbjct: 456 QRQELRSFADLLDGLRALAPTVPLTTLVDRIVAAVGFESYLRGASRAGAPTPGSEEGEERWENVLELRGVA--EEYSELPPAEQLPRFLEEVALVSDVDSYREG-----------------------------APAVTLITLHAVKGLEFPVVFLTGMEEGVFPHARSSESEEELEEERRLCYVGITRAKDRCYLTYSSVRTLFGRT----TEMAPSRFLLELPTEQIDVRATPRQERNTWGELYETEPYERERQRRGRQDRALAGLSAAWRGAPDKAPRR 701
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A3L7YP49_9CHLR (DNA helicase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A3L7YP49_9CHLR) HSP 1 Score: 110 bits (274), Expect = 1.720e-22 Identity = 83/233 (35.62%), Postives = 122/233 (52.36%), Query Frame = 1
Query: 46 GDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE---EERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIV 735
G+V G S LA A ++ +LR +PEL A+ T ++ + L++ G EG +RW N+LEL A RF + + L AL+ F++ETAL++ +D+ E GTE R+ ++T+HA+KGLE+ VF++G+ EG FP R +D+E EERRL YVG+TRAK RL LS R G PSRF+A+IP+ ++
Sbjct: 494 GEVAGISSRARAALASVADVIARLRSRLTLIHLPELLDAVYSETGLRAH----LASEGV-EGEERWANLLELRGIAG--RFLELEPLDALDRFIEETALVADQDSLEE-----------------GTE------------RVTLITLHAAKGLEWPNVFISGLVEGLFPHSRALMDEEQMEEERRLCYVGITRAKRRLTLSYAIRR------GWGDGDGVPSRFLAEIPEELL 684
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A536S5M4_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536S5M4_9CHLR) HSP 1 Score: 109 bits (273), Expect = 2.130e-22 Identity = 79/236 (33.47%), Postives = 113/236 (47.88%), Query Frame = 1
Query: 43 AGDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRK-----DIDDEEERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIV 735
AG++ +K Q++ L FA L+ +LR AA +P L + D T + Y+ G EG +RW NV EL A +S+ L FL+E AL+S D ++++ P ++T+HA KGLEF VF+TG+EEG FP R + + EEERRL YVG+TRAK R +L+ RT T + PSRF+ ++P V
Sbjct: 450 AGEIASIAKRQAEALMGFARLVGRLRAAAARVDLPRLLDEVADATGYETYLKD-----GTEEGEERWANVQELRTLA--EEYSELPHEDQLPRFLEEIALVSDVDEYQDAK-----------------------------PAATLITMHAVKGLEFPIVFMTGMEEGVFPHARSIESGSEAELEEERRLCYVGITRAKDRCYLTWARRRTLFGHTNMN----PPSRFLRELPTQGV 645 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76722.15343.1 >prot_H-elongata_contig76722.15343.1 ID=prot_H-elongata_contig76722.15343.1|Name=mRNA_H-elongata_contig76722.15343.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=380bp VSLRRARALGKALEAGDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPEback to top mRNA from alignment at H-elongata_contig76722:343..2529+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76722.15343.1 ID=mRNA_H-elongata_contig76722.15343.1|Name=mRNA_H-elongata_contig76722.15343.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2187bp|location=Sequence derived from alignment at H-elongata_contig76722:343..2529+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76722:343..2529+ >mRNA_H-elongata_contig76722.15343.1 ID=mRNA_H-elongata_contig76722.15343.1|Name=mRNA_H-elongata_contig76722.15343.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2280bp|location=Sequence derived from alignment at H-elongata_contig76722:343..2529+ (Himanthalia elongata Himel1 dioecious)back to top |