mRNA_H-elongata_contig76601.15329.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76601.15329.1
Unique NamemRNA_H-elongata_contig76601.15329.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.760e-37
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    1 RWEELMKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVDKRSVRQFVPSLI 291
            RWEELM+GSV+RWVPD  RVSTHI+AFDMDGTLIKTKSGKRFGD   DW+L      + L+ W+ RGYKVAI+SNQ+GVG GKVD R ++  V S++
Sbjct:  261 RWEELMEGSVLRWVPDRSRVSTHIVAFDMDGTLIKTKSGKRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTGKVDPRMLKAKVRSVV 357          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: A0A7R9FRH0_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9FRH0_9CRUS)

HSP 1 Score: 84.3 bits (207), Expect = 5.580e-17
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    4 WEELMKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVDKRSVRQFVPSLI 291
            W++   G++M + P   + S  I A+D+DGT+I TKSG+ F     DW ++YA     LK    RGYK+A ++NQLGV KGKV +  +R  V +++
Sbjct:  126 WKDEEGGALMVYTPPNIQHSEKIAAYDIDGTIIATKSGRVFATDRNDWRILYAEIPGKLKELASRGYKLAFLTNQLGVAKGKVGREELRGKVEAVV 221          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: A0A7R9BK47_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BK47_9CRUS)

HSP 1 Score: 81.3 bits (199), Expect = 7.000e-16
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    4 WEELMKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVDKRSVRQFVPSLI 291
            W  L    ++ W+P     S  I A+DMDGTLI TKSGK F   + DW ++Y+     LK+  Q G+K+ I++NQ GV  GKV  + ++  + +++
Sbjct:  145 WSSLENDKLLAWMPSGIEHSEKIAAYDMDGTLITTKSGKVFATNKDDWRIIYSEVPKKLKSLVQDGFKIVIMTNQSGVSAGKVTIKDLKSKLEAVV 240          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: UPI0006B80884 (uncharacterized protein F21D5.5 n=1 Tax=Bactrocera oleae TaxID=104688 RepID=UPI0006B80884)

HSP 1 Score: 80.1 bits (196), Expect = 1.780e-15
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    1 RWEELMKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVD----KRSVRQFVPSL 288
            +WE +  GS+M +  D  + S  I  +D+DGT+I TKSG  F     DW+++Y      LK+ YQ GYK+   +NQ G+G GK+     KR ++  +  L
Sbjct:  155 KWESVGNGSMMVYNDDAVKASNKIAGYDIDGTIITTKSGNVFPKHTDDWQILYPEVPKKLKSLYQSGYKICFFTNQGGIGSGKIKLDDFKRKIKDILKKL 254          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: A0A6I9W6P4_9HYME (uncharacterized protein F21D5.5 isoform X1 n=2 Tax=Pogonomyrmex barbatus TaxID=144034 RepID=A0A6I9W6P4_9HYME)

HSP 1 Score: 79.3 bits (194), Expect = 3.350e-15
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:    1 RWEELMKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVD----KRSVRQFVPSL 288
            +W+ +  G ++ + P +      I A+DMDGTLIKTKSG  F     DW+L+Y +  + LK +Y  GYK+ I +NQ G+  GK+     KR + + V  +
Sbjct:  185 KWDSISNGKLLIYTPPSLPNCAKIAAYDMDGTLIKTKSGLVFPKDCNDWQLLYPDIPNKLKQFYTNGYKIVIFTNQAGLSSGKIKINDFKRKIERIVQKI 284          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: UPI0015B075F3 (bifunctional polynucleotide phosphatase/kinase-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015B075F3)

HSP 1 Score: 79.0 bits (193), Expect = 3.760e-15
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 RWEELMKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVD----KRSVRQFVPSL 288
            RWEE     +  + P   R  T I AFDMD T+I TKSGK F     DW+++YA     +K  Y+ GYK+ + +NQ G+ +G+      K+ V + V  L
Sbjct:   17 RWEEYDHSKIFIFTPAGLRGQTKIAAFDMDHTIITTKSGKVFPTDMSDWKILYAEVPGKMKKLYEEGYKIVVFTNQKGISRGRTSAPEFKKKVERIVQKL 116          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: UPI000E6E4103 (uncharacterized protein F21D5.5-like n=2 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E4103)

HSP 1 Score: 78.6 bits (192), Expect = 5.380e-15
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    4 WEELMKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVDKRSVRQFVPSLI 291
            WE++  G ++ +       S+ I A+D+DGTLIKTKSG  F   + DW++ +      LK    +GYK+ I +NQ G+GKGK D +  +  V +++
Sbjct:   43 WEDVSNGKLLIFTKSGVTASSKIAAYDLDGTLIKTKSGLVFAKNKDDWQIAFKQIPKHLKELETQGYKLVIFTNQAGIGKGKTDPKEFKGKVEAIL 138          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: UPI000E6E51B5 (uncharacterized protein F21D5.5-like n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E51B5)

HSP 1 Score: 78.6 bits (192), Expect = 6.240e-15
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    4 WEELMKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVDKRSVRQFVPSLI 291
            WE++  G ++ +       S+ I A+D+DGTLIKTKSG  F   + DW++ +      LK    +GYK+ I +NQ G+GKGK D +  +  V +++
Sbjct:  181 WEDVSNGKLLIFTKSGVTASSKIAAYDLDGTLIKTKSGLVFAKNKDDWQIAFKQIPKHLKELETQGYKLVIFTNQAGIGKGKTDPKEFKGKVEAIL 276          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: A0A182JRT7_9DIPT (FHA_2 domain-containing protein n=1 Tax=Anopheles christyi TaxID=43041 RepID=A0A182JRT7_9DIPT)

HSP 1 Score: 78.2 bits (191), Expect = 8.560e-15
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   61 STHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVDKRSVRQFVPSLI 291
            S  + A+DMDGTLIKTKSG  F     DW++ +A   + LK+ ++ GYK+ I +NQ G+GKGKV     RQ + SL+
Sbjct:  211 SEKVAAYDMDGTLIKTKSGNVFPKSIDDWQIAFAEVPAKLKSLHRNGYKLVIFTNQAGIGKGKVRIEDFRQKIESLV 287          
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Match: A0A1S4H8L3_ANOGA (FHA_2 domain-containing protein n=10 Tax=gambiae species complex TaxID=44542 RepID=A0A1S4H8L3_ANOGA)

HSP 1 Score: 78.2 bits (191), Expect = 8.600e-15
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   61 STHILAFDMDGTLIKTKSGKRFGDGEGDWELMYANTSSALKAWYQRGYKVAIVSNQLGVGKGKVDKRSVRQFVPSLI 291
            S  + A+DMDGTLIKTKSG  F     DW++ +A   + LK+ ++ GYK+ I +NQ G+GKGKV     RQ + SL+
Sbjct:  244 SEKVAAYDMDGTLIKTKSGNVFPKSIDDWQIAFAEVPAKLKSLHRNGYKLVIFTNQAGIGKGKVRIEDFRQKIESLV 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76601.15329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS6_ECTSI3.760e-3765.98Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7R9FRH0_9CRUS5.580e-1740.63Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A7R9BK47_9CRUS7.000e-1637.50Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
UPI0006B808841.780e-1537.00uncharacterized protein F21D5.5 n=1 Tax=Bactrocera... [more]
A0A6I9W6P4_9HYME3.350e-1537.00uncharacterized protein F21D5.5 isoform X1 n=2 Tax... [more]
UPI0015B075F33.760e-1538.00bifunctional polynucleotide phosphatase/kinase-lik... [more]
UPI000E6E41035.380e-1536.46uncharacterized protein F21D5.5-like n=2 Tax=Cteno... [more]
UPI000E6E51B56.240e-1536.46uncharacterized protein F21D5.5-like n=1 Tax=Cteno... [more]
A0A182JRT7_9DIPT8.560e-1546.75FHA_2 domain-containing protein n=1 Tax=Anopheles ... [more]
A0A1S4H8L3_ANOGA8.600e-1546.75FHA_2 domain-containing protein n=10 Tax=gambiae s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76601contigH-elongata_contig76601:891..2266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7FLS6
KEGG koko:K08073
EggNOG free text desc.DNA-3'-diphospho-5'-guanosine diphosphatase
EggNOG OGsCOG0241@1,KOG2134@2759
EC2.7.1.78,3.1.3.32
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76601.15329.1prot_H-elongata_contig76601.15329.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76601 891..2251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.0150366-CDS-H-elongata_contig76601:890..10661622931170.0150366-CDS-H-elongata_contig76601:890..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76601 891..1066 -
1691679727.0335624-CDS-H-elongata_contig76601:890..10661691679727.0335624-CDS-H-elongata_contig76601:890..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76601 891..1066 -
1622931170.0369203-CDS-H-elongata_contig76601:2151..22511622931170.0369203-CDS-H-elongata_contig76601:2151..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76601 2152..2251 -
1691679727.0461907-CDS-H-elongata_contig76601:2151..22511691679727.0461907-CDS-H-elongata_contig76601:2151..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76601 2152..2251 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.0632265-UTR-H-elongata_contig76601:2251..22661622931170.0632265-UTR-H-elongata_contig76601:2251..2266Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76601 2252..2266 -
1691679727.056883-UTR-H-elongata_contig76601:2251..22661691679727.056883-UTR-H-elongata_contig76601:2251..2266Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76601 2252..2266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76601.15329.1

>prot_H-elongata_contig76601.15329.1 ID=prot_H-elongata_contig76601.15329.1|Name=mRNA_H-elongata_contig76601.15329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MKGSVMRWVPDTRRVSTHILAFDMDGTLIKTKSGKRFGDGEGDWELMYAN
TSSALKAWYQRGYKVAIVSNQLGVGKGKVDKRSVRQFVPSLI
back to top

mRNA from alignment at H-elongata_contig76601:891..2266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76601.15329.1 ID=mRNA_H-elongata_contig76601.15329.1|Name=mRNA_H-elongata_contig76601.15329.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1376bp|location=Sequence derived from alignment at H-elongata_contig76601:891..2266- (Himanthalia elongata Himel1 dioecious)
AGGTGGGAAGAGCTGATGAAAGGATCGGTGATGCGGTGGGTGCCGGACAC TAGGAGAGTTTCCACACATATTCTGGCGTTTGACATGGACGGGACGCTGA TCAAGACCAAGTCAGGTCGGGGGGGTGGCGGAGGGGAGGGGGAGGGGGGA CAAGCCCTAATTACAGTACTAGTACTACATAGAATAGTGTAGTATGAAAA CGCCTAGGGTAGAATACCCCGGGGATGATGTCTTCATGTCCCCCTCAGCA GCTTATTTACACCCCATAGGTGTTTGGTCGTGGGTTGGGTCGGAAATTGA TTATTGTGACTACAAAGTCACAATTTAGTTTGTGACTGCGGGGACATATA AGGGGTCATCCCCGGGGTTTCCACCATCAAATGAAGGCTCTCAGAGCCCA AGGGTGTGTGTGTGTGGGTTAGGGTTAGTGGGCGGGTTGGGTCAGCCAGT ATATATAGGTTTTTAAGAAATGGCTGTTTTACTCTGCATGAAATTAACGT TTTTTGCAGTTTTTTGCAGTTTTTTGCAGTTTTTTCCTGTAGTCACAAAC TAATATGTGACTACGTAGTCACAGTTATCACTCCCCTGGTTGGGTCCACC ATTTAACCTTTTCTCAGCACAGTATATATATAGGTTTCAGAGAGACGGCT ATTTACTCGGCATGAAATCACCATATTTTGCATTTATGTCGTCCTCTTAT GCTGGCAGGTTCTCATCCCCCGGGGTTTCTACCCTAGGCGTTTTCTACTC TTATGCTGGCAGGTTCTCTGCTGCAATATTCTATGTAGTACCAGTACTAT AATTAGGGCTTCCCGGGAGGGGGGGGGAGTTTGTAAAGCGTTCTCGGTTT GGTCAGGGAAGAATGAATTTCGTCGTACCACGTATCACGTATCCCCAGTT GTTGTGCTTCAGATGGGATACGTGATCACTGTCGAGGATGGGGATAGACA CACTTAAACACACAATACACACACACACTCACGTCTGGTCAGAAGTTTTT GGAGCAAATATGATTGAATCCCCTTTTGGGAGGATGAATACGAGAGAGGG AGTAGCCTAGAAGCGCTAGCATGACAGAGCCGGATTGCGCGGTTATGTGC AATTTAATAAATACAGACACATAAACACACACAAACACACTTGGCTATCT GTAACCAGCCCCCCTTGACTGTCATCGTGGTGCTAATGACGGGAGTGCAG GGAAACGGTTTGGTGATGGCGAGGGAGACTGGGAGCTGATGTACGCCAAC ACGTCTTCGGCGCTCAAGGCGTGGTACCAGCGTGGCTACAAGGTGGCAAT CGTCTCGAACCAGCTCGGGGTCGGCAAGGGCAAGGTTGACAAGCGCTCGG TACGTCAGTTCGTACCCTCTCTTATC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76601:891..2266-

>mRNA_H-elongata_contig76601.15329.1 ID=mRNA_H-elongata_contig76601.15329.1|Name=mRNA_H-elongata_contig76601.15329.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig76601:891..2266- (Himanthalia elongata Himel1 dioecious)
ATGAAAGGATCGGTGATGCGGTGGGTGCCGGACACTAGGAGAGTTTCCAC
ACATATTCTGGCGTTTGACATGGACGGGACGCTGATCAAGACCAAGTCAG
ATGAAAGGATCGGTGATGCGGTGGGTGCCGGACACTAGGAGAGTTTCCAC
ACATATTCTGGCGTTTGACATGGACGGGACGCTGATCAAGACCAAGTCAG
GGAAACGGTTTGGTGATGGCGAGGGAGACTGGGAGCTGATGTACGCCAAC
ACGTCTTCGGCGCTCAAGGCGTGGTACCAGCGTGGCTACAAGGTGGCAAT
CGTCTCGAACCAGCTCGGGGTCGGCAAGGGCAAGGTTGACAAGCGCTCGG
TACGTCAGTTCGTACCCTCTCTTATCGGAAACGGTTTGGTGATGGCGAGG
GAGACTGGGAGCTGATGTACGCCAACACGTCTTCGGCGCTCAAGGCGTGG
TACCAGCGTGGCTACAAGGTGGCAATCGTCTCGAACCAGCTCGGGGTCGG
CAAGGGCAAGGTTGACAAGCGCTCGGTACGTCAGTTCGTACCCTCTCTTA
TC
back to top