mRNA_H-elongata_contig76497.15322.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A6H5K487_9PHAE (SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K487_9PHAE) HSP 1 Score: 178 bits (451), Expect = 8.940e-54 Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 1
Query: 1 QGNSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEERGRST 297
+GNS YDVIIVDSSDPVGPAETLFQPSFY+NMK+ALAP G+IATQGECLWLHLPLIT+V+ AC E+F SVDYAFTTVPSYPSGQIGF+LASVEER ST
Sbjct: 150 EGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEIFGSVDYAFTTVPSYPSGQIGFVLASVEERDLST 248
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A835ZDK7_9STRA (Spermidine/spermine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK7_9STRA) HSP 1 Score: 149 bits (375), Expect = 2.370e-42 Identity = 67/99 (67.68%), Postives = 81/99 (81.82%), Query Frame = 1
Query: 1 QGNSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEERGRST 297
+GN YDVIIVDSSDPVGPAETLF+P F+ +MK AL+PGGI+ATQGECLWLHL LI V+ +C F S++YAFTT+P+YPSGQIGF++ S ER ST
Sbjct: 150 EGNGQYDVIIVDSSDPVGPAETLFKPEFFLSMKNALSPGGIVATQGECLWLHLKLIRGVLESCASTFTSLEYAFTTMPTYPSGQIGFVVGSTAERDLST 248
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A7S2G2V2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2V2_9STRA) HSP 1 Score: 143 bits (360), Expect = 5.420e-41 Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = 1
Query: 16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEER 285
YDVIIVDSSDPVGPAETLFQP FYE M AL PGG+I TQGEC+WLHL LITSV+ +C ++F +V+YA+TT+P+YPSGQIGF+L S + +
Sbjct: 57 YDVIIVDSSDPVGPAETLFQPEFYEKMAAALNPGGVICTQGECMWLHLDLITSVLTSCCDIFPTVEYAYTTIPTYPSGQIGFVLCSSDRQ 146
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A7S4A7K5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7K5_9STRA) HSP 1 Score: 144 bits (364), Expect = 3.180e-40 Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEERGRS 294
YDVIIVDSSDPVGPAETLF P+FY++MK ALAP GI+ TQGECLWLHLPLI V+ AC F SV+YA+TTVP+YPSGQIGF+L S+++ R+
Sbjct: 204 YDVIIVDSSDPVGPAETLFAPAFYDSMKAALAPNGIVCTQGECLWLHLPLIAKVVTACRATFPSVEYAYTTVPTYPSGQIGFVLCSLDDGERA 296
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: F0YCA3_AURAN (PABS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA3_AURAN) HSP 1 Score: 143 bits (360), Expect = 5.380e-40 Identity = 62/89 (69.66%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEE 282
YDVIIVDSSDPVGPAETLF+P+FY++M+ ALAPGG + TQGEC+WLHLPLI+ V+ AC ++F +V+YA+T VP+YPSGQIGFI+ S++E
Sbjct: 169 YDVIIVDSSDPVGPAETLFEPAFYDSMRAALAPGGAVCTQGECMWLHLPLISKVVSACRDLFPTVEYAYTCVPTYPSGQIGFIMCSLDE 257
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: K3WTM8_GLOUD (PABS domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WTM8_GLOUD) HSP 1 Score: 137 bits (346), Expect = 6.390e-38 Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 1
Query: 16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEE 282
+DVIIVDSSDPVGPAE LF+ FYENMK++LAPGGI+ TQGECLWLHL LI V+ C F ++ YAFTT+P+YPSGQIGFI+ S++E
Sbjct: 160 FDVIIVDSSDPVGPAEVLFRAEFYENMKKSLAPGGIVCTQGECLWLHLDLIVEVLGRCQNYFPTIQYAFTTIPTYPSGQIGFIVCSLDE 248
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A3M6VRP9_9STRA (PABS domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRP9_9STRA) HSP 1 Score: 135 bits (341), Expect = 3.260e-37 Identity = 59/92 (64.13%), Postives = 77/92 (83.70%), Query Frame = 1
Query: 7 NSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEE 282
N +DV+IVDSSDPVGPAE L++ FYENMK++L+P GII TQGECLWLHL LI VM C +F+SV+Y++TT+P+YPSGQIGFI+ S+++
Sbjct: 157 NDKFDVVIVDSSDPVGPAEVLYRAEFYENMKKSLSPDGIICTQGECLWLHLDLIVDVMTRCQNLFSSVNYSYTTIPTYPSGQIGFIMCSLDD 248
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A507CCN1_9FUNG (Spermidine synthase n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CCN1_9FUNG) HSP 1 Score: 134 bits (338), Expect = 9.150e-37 Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1
Query: 16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEER 285
YDV+I DSSDPVGPAE+LFQ SF++ +K AL PGGIIATQGEC WLHLPLI +V+ C E++ SV YA+ +VP+YP GQIGFILAS E++
Sbjct: 164 YDVVITDSSDPVGPAESLFQGSFFQLLKNALRPGGIIATQGECQWLHLPLIKTVISQCKEIYPSVSYAYASVPTYPCGQIGFILASTEKK 253
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A8K1FNW5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNW5_PYTOL) HSP 1 Score: 134 bits (337), Expect = 1.290e-36 Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1
Query: 16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEE 282
+DVIIVDSSDPVGPAE LF+ FYENMK +L+PGGI+ TQGECLWLHL LI V+ C F +V YAFTT+P+YPSGQIGF++ S+++
Sbjct: 156 FDVIIVDSSDPVGPAEVLFRAEFYENMKNSLSPGGIVCTQGECLWLHLDLIAEVLTRCHAYFPTVQYAFTTIPTYPSGQIGFVMCSLDD 244
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A7S2XU07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XU07_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.090e-36 Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1
Query: 1 QGNSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFIL 267
+G+ YDVIIVDSSDP GPAE LFQP+F+E+ AL PGGI+ TQGEC WLHL LI+SV+ C +F V+YA+TT+P+YPSGQIGFI+
Sbjct: 69 EGHDVYDVIIVDSSDPEGPAEALFQPAFFESAAAALQPGGILCTQGECQWLHLDLISSVVEGCGALFPQVEYAYTTIPTYPSGQIGFII 157 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76497.15322.1 >prot_H-elongata_contig76497.15322.1 ID=prot_H-elongata_contig76497.15322.1|Name=mRNA_H-elongata_contig76497.15322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp QGNSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWback to top mRNA from alignment at H-elongata_contig76497:2261..2799- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76497.15322.1 ID=mRNA_H-elongata_contig76497.15322.1|Name=mRNA_H-elongata_contig76497.15322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=539bp|location=Sequence derived from alignment at H-elongata_contig76497:2261..2799- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76497:2261..2799- >mRNA_H-elongata_contig76497.15322.1 ID=mRNA_H-elongata_contig76497.15322.1|Name=mRNA_H-elongata_contig76497.15322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig76497:2261..2799- (Himanthalia elongata Himel1 dioecious)back to top |