mRNA_H-elongata_contig76497.15322.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76497.15322.1
Unique NamemRNA_H-elongata_contig76497.15322.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A6H5K487_9PHAE (SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K487_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 8.940e-54
Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 1
Query:    1 QGNSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEERGRST 297
            +GNS YDVIIVDSSDPVGPAETLFQPSFY+NMK+ALAP G+IATQGECLWLHLPLIT+V+ AC E+F SVDYAFTTVPSYPSGQIGF+LASVEER  ST
Sbjct:  150 EGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEIFGSVDYAFTTVPSYPSGQIGFVLASVEERDLST 248          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A835ZDK7_9STRA (Spermidine/spermine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.370e-42
Identity = 67/99 (67.68%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    1 QGNSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEERGRST 297
            +GN  YDVIIVDSSDPVGPAETLF+P F+ +MK AL+PGGI+ATQGECLWLHL LI  V+ +C   F S++YAFTT+P+YPSGQIGF++ S  ER  ST
Sbjct:  150 EGNGQYDVIIVDSSDPVGPAETLFKPEFFLSMKNALSPGGIVATQGECLWLHLKLIRGVLESCASTFTSLEYAFTTMPTYPSGQIGFVVGSTAERDLST 248          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A7S2G2V2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2V2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 5.420e-41
Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = 1
Query:   16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEER 285
            YDVIIVDSSDPVGPAETLFQP FYE M  AL PGG+I TQGEC+WLHL LITSV+ +C ++F +V+YA+TT+P+YPSGQIGF+L S + +
Sbjct:   57 YDVIIVDSSDPVGPAETLFQPEFYEKMAAALNPGGVICTQGECMWLHLDLITSVLTSCCDIFPTVEYAYTTIPTYPSGQIGFVLCSSDRQ 146          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A7S4A7K5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7K5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.180e-40
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEERGRS 294
            YDVIIVDSSDPVGPAETLF P+FY++MK ALAP GI+ TQGECLWLHLPLI  V+ AC   F SV+YA+TTVP+YPSGQIGF+L S+++  R+
Sbjct:  204 YDVIIVDSSDPVGPAETLFAPAFYDSMKAALAPNGIVCTQGECLWLHLPLIAKVVTACRATFPSVEYAYTTVPTYPSGQIGFVLCSLDDGERA 296          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: F0YCA3_AURAN (PABS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA3_AURAN)

HSP 1 Score: 143 bits (360), Expect = 5.380e-40
Identity = 62/89 (69.66%), Postives = 80/89 (89.89%), Query Frame = 1
Query:   16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEE 282
            YDVIIVDSSDPVGPAETLF+P+FY++M+ ALAPGG + TQGEC+WLHLPLI+ V+ AC ++F +V+YA+T VP+YPSGQIGFI+ S++E
Sbjct:  169 YDVIIVDSSDPVGPAETLFEPAFYDSMRAALAPGGAVCTQGECMWLHLPLISKVVSACRDLFPTVEYAYTCVPTYPSGQIGFIMCSLDE 257          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: K3WTM8_GLOUD (PABS domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WTM8_GLOUD)

HSP 1 Score: 137 bits (346), Expect = 6.390e-38
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEE 282
            +DVIIVDSSDPVGPAE LF+  FYENMK++LAPGGI+ TQGECLWLHL LI  V+  C   F ++ YAFTT+P+YPSGQIGFI+ S++E
Sbjct:  160 FDVIIVDSSDPVGPAEVLFRAEFYENMKKSLAPGGIVCTQGECLWLHLDLIVEVLGRCQNYFPTIQYAFTTIPTYPSGQIGFIVCSLDE 248          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A3M6VRP9_9STRA (PABS domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRP9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.260e-37
Identity = 59/92 (64.13%), Postives = 77/92 (83.70%), Query Frame = 1
Query:    7 NSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEE 282
            N  +DV+IVDSSDPVGPAE L++  FYENMK++L+P GII TQGECLWLHL LI  VM  C  +F+SV+Y++TT+P+YPSGQIGFI+ S+++
Sbjct:  157 NDKFDVVIVDSSDPVGPAEVLYRAEFYENMKKSLSPDGIICTQGECLWLHLDLIVDVMTRCQNLFSSVNYSYTTIPTYPSGQIGFIMCSLDD 248          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A507CCN1_9FUNG (Spermidine synthase n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CCN1_9FUNG)

HSP 1 Score: 134 bits (338), Expect = 9.150e-37
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1
Query:   16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEER 285
            YDV+I DSSDPVGPAE+LFQ SF++ +K AL PGGIIATQGEC WLHLPLI +V+  C E++ SV YA+ +VP+YP GQIGFILAS E++
Sbjct:  164 YDVVITDSSDPVGPAESLFQGSFFQLLKNALRPGGIIATQGECQWLHLPLIKTVISQCKEIYPSVSYAYASVPTYPCGQIGFILASTEKK 253          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A8K1FNW5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNW5_PYTOL)

HSP 1 Score: 134 bits (337), Expect = 1.290e-36
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   16 YDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEE 282
            +DVIIVDSSDPVGPAE LF+  FYENMK +L+PGGI+ TQGECLWLHL LI  V+  C   F +V YAFTT+P+YPSGQIGF++ S+++
Sbjct:  156 FDVIIVDSSDPVGPAEVLFRAEFYENMKNSLSPGGIVCTQGECLWLHLDLIAEVLTRCHAYFPTVQYAFTTIPTYPSGQIGFVMCSLDD 244          
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Match: A0A7S2XU07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XU07_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.090e-36
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 QGNSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLWLHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFIL 267
            +G+  YDVIIVDSSDP GPAE LFQP+F+E+   AL PGGI+ TQGEC WLHL LI+SV+  C  +F  V+YA+TT+P+YPSGQIGFI+
Sbjct:   69 EGHDVYDVIIVDSSDPEGPAEALFQPAFFESAAAALQPGGILCTQGECQWLHLDLISSVVEGCGALFPQVEYAYTTIPTYPSGQIGFII 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76497.15322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K487_9PHAE8.940e-5484.85SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835ZDK7_9STRA2.370e-4267.68Spermidine/spermine synthase n=1 Tax=Tribonema min... [more]
A0A7S2G2V2_9STRA5.420e-4170.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4A7K5_9STRA3.180e-4070.97Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YCA3_AURAN5.380e-4069.66PABS domain-containing protein n=1 Tax=Aureococcus... [more]
K3WTM8_GLOUD6.390e-3868.54PABS domain-containing protein n=2 Tax=Pythiaceae ... [more]
A0A3M6VRP9_9STRA3.260e-3764.13PABS domain-containing protein n=1 Tax=Peronospora... [more]
A0A507CCN1_9FUNG9.150e-3767.78Spermidine synthase n=1 Tax=Synchytrium microbalum... [more]
A0A8K1FNW5_PYTOL1.290e-3666.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2XU07_9STRA3.090e-3665.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76497contigH-elongata_contig76497:2261..2799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.7e-42
Seed eggNOG ortholog2880.D7FKW3
Preferred nameSRM
KEGG rclassRC00003,RC00021,RC00053,RC00060,RC00215,RC00225
KEGG koko:K00293,ko:K00797,ko:K00802,ko:K05353
KEGG ReactionR01153,R01920,R02315,R02869,R08359
KEGG Pathwayko00270,ko00300,ko00310,ko00330,ko00410,ko00480,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00310,map00330,map00410,map00480,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00030,M00032,M00034,M00133
GOsGO:0003674,GO:0003824,GO:0004766,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006575,GO:0006576,GO:0006595,GO:0006596,GO:0006597,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008215,GO:0008216,GO:0008295,GO:0009058,GO:0009108,GO:0009110,GO:0009308,GO:0009309,GO:0009653,GO:0009987,GO:0010033,GO:0015939,GO:0015940,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0016768,GO:0017144,GO:0019752,GO:0030587,GO:0031150,GO:0031154,GO:0031288,GO:0032502,GO:0032787,GO:0034097,GO:0034641,GO:0036360,GO:0042221,GO:0042364,GO:0042398,GO:0042401,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046983,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0051703,GO:0051704,GO:0051716,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0072330,GO:0090702,GO:0097164,GO:0099120,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830
EggNOG free text desc.spermidine synthase activity
EggNOG OGsCOG0421@1,KOG1562@2759
EC1.5.1.10,2.1.1.53,2.5.1.16,2.5.1.22
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionspermidine/spermine synthase
Ec32 orthologEc-17_001590.1
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.1450577-CDS-H-elongata_contig76497:2260..24731622931169.1450577-CDS-H-elongata_contig76497:2260..2473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76497 2261..2473 -
1691679726.632743-CDS-H-elongata_contig76497:2260..24731691679726.632743-CDS-H-elongata_contig76497:2260..2473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76497 2261..2473 -
1622931169.1626363-CDS-H-elongata_contig76497:2709..27991622931169.1626363-CDS-H-elongata_contig76497:2709..2799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76497 2710..2799 -
1691679726.6594715-CDS-H-elongata_contig76497:2709..27991691679726.6594715-CDS-H-elongata_contig76497:2709..2799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76497 2710..2799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76497.15322.1prot_H-elongata_contig76497.15322.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76497 2261..2799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76497.15322.1

>prot_H-elongata_contig76497.15322.1 ID=prot_H-elongata_contig76497.15322.1|Name=mRNA_H-elongata_contig76497.15322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
QGNSDYDVIIVDSSDPVGPAETLFQPSFYENMKRALAPGGIIATQGECLW
LHLPLITSVMHACVEVFASVDYAFTTVPSYPSGQIGFILASVEERGRSTT
*
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mRNA from alignment at H-elongata_contig76497:2261..2799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76497.15322.1 ID=mRNA_H-elongata_contig76497.15322.1|Name=mRNA_H-elongata_contig76497.15322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=539bp|location=Sequence derived from alignment at H-elongata_contig76497:2261..2799- (Himanthalia elongata Himel1 dioecious)
CAGGGTAACAGCGATTACGACGTCATCATCGTGGATTCATCGGATCCTGT TGGCCCTGCTGAGACACTTTTCCAGCCTTCTTTTTACGAAGTGAGTGTCG AATGAAAACGGAAGTAGTCTTAAGTTTTCGAAACGTATCTTGTTGCTTTC CAATGACAAAAGAAGCCTGTCACAGCAGTATTGCGAGTCTTGCTATTAGC GATCTTTCTCTAACTATCCTCGCCCTCGCATATGTTTTGAAACATTGACA CATTTGACACCACGAACTGTTGATGCATCGCCCCTCGCCGACTGCTCTTG GTTCACCTCGGAACCTTGGGGCTCAGAATATGAAGCGGGCTTTGGCGCCT GGGGGGATCATCGCCACACAAGGCGAATGCCTCTGGTTACACCTGCCTCT TATCACAAGTGTTATGCACGCATGTGTCGAAGTGTTCGCATCCGTGGATT ATGCTTTCACGACGGTCCCTTCTTACCCCTCCGGGCAGATTGGTTTCATC CTCGCCAGCGTGGAGGAGCGAGGTAGGAGCACGACATAA
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Coding sequence (CDS) from alignment at H-elongata_contig76497:2261..2799-

>mRNA_H-elongata_contig76497.15322.1 ID=mRNA_H-elongata_contig76497.15322.1|Name=mRNA_H-elongata_contig76497.15322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig76497:2261..2799- (Himanthalia elongata Himel1 dioecious)
CAGGGTAACAGCGATTACGACGTCATCATCGTGGATTCATCGGATCCTGT
TGGCCCTGCTGAGACACTTTTCCAGCCTTCTTTTTACGAACAGGGTAACA
GCGATTACGACGTCATCATCGTGGATTCATCGGATCCTGTTGGCCCTGCT
GAGACACTTTTCCAGCCTTCTTTTTACGAAAATATGAAGCGGGCTTTGGC
GCCTGGGGGGATCATCGCCACACAAGGCGAATGCCTCTGGTTACACCTGC
CTCTTATCACAAGTGTTATGCACGCATGTGTCGAAGTGTTCGCATCCGTG
GATTATGCTTTCACGACGGTCCCTTCTTACCCCTCCGGGCAGATTGGTTT
CATCCTCGCCAGCGTGGAGGAGCGAGGTAGGAGCACGACATAAAATATGA
AGCGGGCTTTGGCGCCTGGGGGGATCATCGCCACACAAGGCGAATGCCTC
TGGTTACACCTGCCTCTTATCACAAGTGTTATGCACGCATGTGTCGAAGT
GTTCGCATCCGTGGATTATGCTTTCACGACGGTCCCTTCTTACCCCTCCG
GGCAGATTGGTTTCATCCTCGCCAGCGTGGAGGAGCGAGGTAGGAGCACG
ACATAA
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