mRNA_H-elongata_contig76023.15285.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A5N6LHI8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LHI8_9ASTR) HSP 1 Score: 199 bits (507), Expect = 1.750e-53 Identity = 141/432 (32.64%), Postives = 207/432 (47.92%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEE--NQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESM-------------------------------VEVRRQEGKQGTGYVG----------------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQ 1149
EP N + A+ PE W A +EM+ M +N V+ V P VG+K ++KRK V YK RLVA+GF Q + V Y E +S SIR+LLA A D E+ D + AFL + E++Y+ PE + K+ LNK ++GL Q RC N +F + GF + + C++RK LV+ +VDDIL + + ++ LG F KD+G+A Y +G I R+ +R L + Q Y++ M +E+RR + +G + RF ++PG AH AV I++YL TK+ + +GG EL + YTD+ F D RS S V L GA+SW SS Q V A T+++EY+A SDA KEV ++++
Sbjct: 205 EPTNYKSAISDPESVKWLDAMNSEMKSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDENFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPSKACKLNKSIHGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKASGRTISFLVL-YVDDILIIGNNILMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRFNMENSKKGTIPMTKGTVLNKSQSPSTDIEIRRMQAIPYASAIGSIMYAMLCTRPDVSYALSMTSRFQQSPGIAHWTAVKNILKYLRRTKEMFLIFGGVEEELTVRCYTDASFQTDRDDSRSQSGFVFTLNGGAVSWKSSKQSVVADSTTESEYIAASDAAKEVAWIKK 635
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A438DYU4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DYU4_VITVI) HSP 1 Score: 201 bits (510), Expect = 7.600e-53 Identity = 148/451 (32.82%), Postives = 233/451 (51.66%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQ-DSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPE---ENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV-------------------------------EVRRQEGKQGTGYVG----------------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQG-CELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNV 1197
EP+ ++A+ S E D W KA + EM + +N ++ V +PKD+ VVG+K ++KRK G ++ +YK RLVA+GF Q E V Y E +S +SIR+LLA A +D EL D + AFL ++DE +Y++ PE E K G V L K +YGL Q R +F M IGF D C++ K+ DD V ++++VDD+L K+K +++ L +F+ KD+G A+ +G I R+ +R L++ Q+ Y+ ++ E R E VG V + R+ PG H +AV + QYL T+ + YGG E + + D+D+ +DTR+S++ V L GA+SW +++Q V A T++AEY+A+++AVKE ++L+ + EL++ G V V
Sbjct: 548 EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPEGFGEGIK-DGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNRSSHDGCVYFKLTDDSM-VYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTLFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITE--ELAMYRGKVVV 994
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A438IQ82_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IQ82_VITVI) HSP 1 Score: 198 bits (504), Expect = 4.390e-52 Identity = 137/399 (34.34%), Postives = 204/399 (51.13%), Query Frame = 1
Query: 19 QAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGA--VGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVE-VRRQEGKQGTGYV--------------------GVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLR 1146
QAMES + W +A E++ M N V+ + P + VG K ++K K +E++K RLVA+GF Q E + Y + +S S+R+++A A D EL D + AFL ++DE++Y+E PE K V L K +YGL Q R KF + + GF+ VD C++ KV K + ++++VDDIL + D + L + F DMG+A Y +G I R+ L + Q Y++ ++E Q G + V + R+ +PG H KA K+M+YL TKD+ +TY + +L Y+DSD+G CLD+ +S S V MLA GAISW S Q +TAS T +AE+VA +A L+LR
Sbjct: 693 QAMESDDSSKWMEAMNEELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENIVDQCIYLKVSGSKF-IFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1089
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI) HSP 1 Score: 198 bits (503), Expect = 6.210e-52 Identity = 146/451 (32.37%), Postives = 233/451 (51.66%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQ-DSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPE---ENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV-------------------------------EVRRQEGKQGTGYVG----------------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQG-CELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNV 1197
EP+ ++A+ S E D W KA + EM + +N ++ V +PKD+ VVG+K ++KRK G ++ +YK RLVA+GF Q E V Y E +S +SIR+LLA A +D EL D + AFL ++DE +Y++ PE E K G V L K +YGL Q R +F M IGF D C++ K+ +D V ++++VDD+L K+K +++ L +F+ KD+G A+ +G I R+ +R L++ Q+ Y+ ++ E R E VG V + R+ PG H +AV + QYL T+ + YGG E + + D+D+ +DTR+S++ V + GA+SW +++Q V A T++AEY+A+++AVKE ++L+ + EL++ G V V
Sbjct: 734 EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPEGFGEGIK-DGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNPSSHDGCVYFKLTEDSM-VYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTVFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITE--ELAMYRGKVVV 1180
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 196 bits (497), Expect = 4.100e-51 Identity = 126/445 (28.31%), Postives = 224/445 (50.34%), Query Frame = 1
Query: 22 AMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVE---------------------------VRRQEGKQGTGYVGVRAVV-------------RFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLR------IGAVNVLRIIRGP 1218
AM + +WRKA E E+ + V+++V RP+D+ ++G+K ++K K G D +VEKYK RLVAQGF QVE + Y E ++ + SIR+LLA A D E+ D + AFL +++EE+Y+++P ++ + AV L K +YGL Q R K ++ T+GF + D C+F K +D + ++ V+VDD + + + + ++LG +F D+G+ + + +TRN +ER +++ Q Y+E ++E V +E ++ G + A+ R + PG H AV ++ +YL + + Y G+ YTD+D+ R+S+S +L+ AISW S Q + +++AEY+A + +E +++ + L L+ + + +++I+ P
Sbjct: 1001 AMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMD-RHPPIIAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMAECKPVHTPMDSKLKLEKLHAPEVNVKEYQRLIGSLMYAAIATRFDIATAVGMLSRHSQAPGKEHHIAVKRVFRYLRGASESDVLYDGKSPTTDPVIYTDADWAGDSSDRKSISGYTAILSGAAISWSSKKQSTVSLSSTEAEYIAAARGTQEATWIQTFLSEIGLPLKKPITLYVDNQSAIKLIQNP 1444
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 193 bits (491), Expect = 5.520e-51 Identity = 134/448 (29.91%), Postives = 223/448 (49.78%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV---------------------------EVRRQEGKQGTGYV-------------GVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNVLRIIRGPSS 1224
+P++ +AM P+ + W+ A E+ V+ +Y +V RP+D+ VVG K +++ K G D ++EKYK R+VA+GF QVE V YT+ ++ ASIR LLA A D E+ D + AFL ++DEE+++ P Q V L K +YGL Q R K + ++GF D +F K +D ++V V++DD+L A++ A+LG + D+G+AR + I R+ R +++ Q YVES++ E+ + G + V A+ + +PG H A+M + +YL T D R+ Y G Y D+++ + ++ RRS++ V +++ AISW S Q TA +++AEY+A++ A KE L+LR F++ ++ A L ++ S+
Sbjct: 281 DPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKN-EDGVLLIVAVYIDDMLIFCNSLPAVEALKADLGSHYDMTDLGEARRILNIKIIRDRARRTIELTQRQYVESILTHQGMADCRPVSTPMAQNLKLLKLSDAEIDATPYQSALGSLMYAMLGTRPDLAFAVGALSKHAAHPGEEHWTALMHVYKYLRATTDLRLVYDGNAKGEFPLCYVDANWASDVNDRRSVTGYVYIMSGAAISWSSKKQPSTALSSTEAEYMAMAGATKEALWLRT---FLDEIQQLPAAATLLLVDNQSA 724
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A2N9FS65_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FS65_FAGSY) HSP 1 Score: 194 bits (493), Expect = 1.220e-50 Identity = 133/389 (34.19%), Postives = 210/389 (53.98%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPE--ENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVV-VHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQGTGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQ 1158
EP + +A+ SP+ D+W A + EM M +N V++ V P + +G K + K K D +++YK RLVA+G+ Q E + Y + +S ASIR++L+ A +D EL D + AFL ++DEE+Y+ P E + V L + +YGL Q R +F + + GFE + D C++ K K +L++ ++VDDIL D ++ L F+ KDMG+A + +G ITR+ ++ L + Q Y++ ++E V V R+ NPGPAH +AV +I++YL T D + Y G +L Y+D+D+ + D R+S S +L GA+SW S Q A T ++EYVA S AV+E ++LR+ Q
Sbjct: 683 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKVCRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLK--RSKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILEHI---------CFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY--HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQ 1058
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE) HSP 1 Score: 194 bits (492), Expect = 1.820e-50 Identity = 133/416 (31.97%), Postives = 213/416 (51.20%), Query Frame = 1
Query: 43 DDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV-------------------------------EVRRQEGKQGTGYVG----------------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGG-QGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLR 1146
D W++A + E + +EN ++ V P K+ + +K +++ K K+ K+K RLV +G Q + + + E +S +SIR LLA A +D ++ DA AFL+ D+ EE+Y+ PE Q+ SG V L K +YGL Q R N K + TIG K D C++ K K V V V VDD+L + DK ++L + FK D+G+A++ +G I+R+ + +++ +DQ Y+++++ E ++ E VG V V RF NPGPAH AV +I++Y+ T DW++ Y G + E+ Y DSDF + +D R+S++ V ++ G++SW + Q TA T++AEY+ALS A +E L+LR
Sbjct: 853 DLWKQAMDVEYKSQLENGTWELVDLPPGKVPLNSKWVFRTKRDVTGKIVKHKARLVVKGCAQRKGLDFEETFSPVVRYSSIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQE-SGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYYKS-SQKKMVFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMENCNPAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWKLEYDGTKSSEITG--YCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTALSTTEAEYMALSAATQEALWLR 1264
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A0B4EZU2_METAF (Gag-Pol polyprotein (Fragment) n=2 Tax=Metarhizium TaxID=5529 RepID=A0A0B4EZU2_METAF) HSP 1 Score: 193 bits (490), Expect = 3.310e-50 Identity = 133/429 (31.00%), Postives = 209/429 (48.72%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV------------------EVRRQEGKQGTGYV------GVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNVLRIIRG 1215
EP + R A +W W +A +E + +N + VARP DK ++ K +YK K G ++ +YK R V +GF Q E + Y E ++ S + + A AA D EL D + AFL DID ++Y+E P E +G V LNK +YGL Q R + +GF D +F K + + V+VDD+L K + L +F+ D+G +Y+G +TR+ K R +++ Q Y+E ++ +++ E + T + + +++RF P AH++AV +IM+YL T D + Y G+ L +TDSD+ +TRRS S V L GAISW S Q TA + +AEY+ + A KE ++LR+ + ++++ G V II G
Sbjct: 826 EPPSYRHAKADLDWPKWLEAMRSEHESLKDNKTWSLVARPTDKRILSGKWVYKLKRGASGEILRYKARWVVRGFEQTEGIDYDETFASVVKPMSYKAIFAIAAALDLELEQMDVKTAFLYGDIDGDVYMEQPSEFNDGTGMVCKLNKALYGLKQAPRIWYQTLAAYLEGLGFYPLTSDFGIFVK-----GQTYIAVYVDDLLIAGPSKKEIQELKNALSDRFQMTDLGPCSHYLGMAVTRDRKNRTIRLSQKAYIEKILKDFGMSEAKHQYTPIKTDQIKTVEDYKPTEEIKTWYAKAIGSLIRFLAKPTEAHQRAVKRIMRYLKATIDLCLVYEGEIEPLTG--FTDSDWAGDRETRRSTSGYVFNLGSGAISWSSKRQSSTALLSCEAEYIGQTQATKEAIWLRRLLKELQIAEGEGQAPVATIIYG 1247
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: B5U9F7_SOYBN (Gag-protease-integrase-RT-RNaseH polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=B5U9F7_SOYBN) HSP 1 Score: 192 bits (489), Expect = 4.490e-50 Identity = 142/425 (33.41%), Postives = 206/425 (48.47%), Query Frame = 1
Query: 19 QAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGA--VGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRR----------------------------QEGKQGTGYVGVRAVV-------------------RFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLR 1146
QAM E + W A + EM M N V+ V P +G K ++K K +E+YK RLVA+GF Q E + Y E +S S+R++LA A D EL+ D + AFL D++EE+Y++ PE SG V LNK +YGL Q R KF G +++ GF+ +D C++ KV K LV+ +VDDIL A D+ + L + F KDMGDA Y +G I R+ L + Q Y+ ++E R +E + Y V + R+ NPG H +A K+++YL TKD+ + Y Q L A Y+DSDF C+D+RRS S + M+A GAISW S Q + A+ T +AE+V+ +A ++L+
Sbjct: 805 QAMSCKESNLWYDAMKDEMSSMQSNKVWNLVELPNGAKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFSSNSGEHLVCKLNKSIYGLKQASRQWYLKFHGIISSFGFDENPMDQCIYHKVSGSKICFLVL-YVDDILLAANDRGLLHEVKQFLSKNFDMKDMGDASYVIGIKIHRDRSRGILGLSQETYINKILERFRMKDCSPSVAPIVKGDRFNLNQCPKNDFEREQMKNIPYASVVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWRAAKKVLRYLQGTKDYMLMYR-QTDNLDAIGYSDSDFAGCVDSRRSTSGYIFMMAGGAISWGSVKQSLAATSTMEAEFVSCFEATSHGVWLK 1227 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76023.15285.1 >prot_H-elongata_contig76023.15285.1 ID=prot_H-elongata_contig76023.15285.1|Name=mRNA_H-elongata_contig76023.15285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp MDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEback to top mRNA from alignment at H-elongata_contig76023:310..1722- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76023.15285.1 ID=mRNA_H-elongata_contig76023.15285.1|Name=mRNA_H-elongata_contig76023.15285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1413bp|location=Sequence derived from alignment at H-elongata_contig76023:310..1722- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76023:310..1722- >mRNA_H-elongata_contig76023.15285.1 ID=mRNA_H-elongata_contig76023.15285.1|Name=mRNA_H-elongata_contig76023.15285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig76023:310..1722- (Himanthalia elongata Himel1 dioecious)back to top |