prot_H-elongata_contig76023.15285.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76023.15285.1
Unique Nameprot_H-elongata_contig76023.15285.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length199
Homology
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A6A3GLU4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GLU4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.080e-26
Identity = 69/171 (40.35%), Postives = 103/171 (60.23%), Query Frame = 0
Query:    6 AELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQG--TGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQ-GCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQ 173
            A + +KF+ KDMG AR+ +G  I  + + R L I Q  Y ES+++   QE  +   T    V  + RF ENPG  H  A +K+++YLL TKD  I Y G  G +L  +AY+D+D+    D RRS+S  +LML    + W S+ Q+  A  +++AEY+ALSD VKE +++R+
Sbjct:   46 AGIAEKFRIKDMGRARFILGIEIDYDMERRTLCISQKAYTESIIKKFGQENAKPCLTPLEPVAKLSRFLENPGEKHCDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNQDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECIWMRR 214          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A6A3IH57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IH57_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.880e-24
Identity = 66/171 (38.60%), Postives = 102/171 (59.65%), Query Frame = 0
Query:    6 AELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQG--TGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQ-GCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQ 173
            A + +KF+ K++  AR+ +G  I  + + R L I Q  Y ES+++   QE  +   T    V  + RF ENPG  H  A +K+++YLL TKD  I Y G  G +L  +AY+D+D+    D RRS+S  +LML    + W S+ Q+  A  +++AEY+ALSD VKE +++R+
Sbjct:   16 AGIAEKFRIKNLERARFILGIEIDYDMERRTLGISQKSYTESIIKKFGQENAKPCLTPLEPVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRR 184          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A2P4X8N7_9STRA (Mitochondrial protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8N7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.900e-24
Identity = 64/169 (37.87%), Postives = 101/169 (59.76%), Query Frame = 0
Query:    6 AELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQGTGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQ-GCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQ 173
            A + +KF+ KD+G AR+ +G  I  + + + L I Q  Y ES++   R     G  +  V  + R+ ENP   H  A +K+++YL  TKD  ITY G+ G EL A  Y+D+D+    D RRS+S  +LM+    + W S+ Q+  A  +++AEY+ALSD +KEV+++R+
Sbjct:  101 AGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTESIINRTRP----GIAFA-VAKLSRYLENPDHRHWDAGIKVVRYLTKTKDAAITYNGRMGTELTA--YSDADWAGNRDNRRSVSGVMLMMCGAPVVWISTFQKTVALSSTEAEYMALSDCIKEVVWMRR 262          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A6A3HBH2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HBH2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.170e-23
Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 0
Query:    6 AELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQG--TGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQ-GCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKE 167
            A + +K++ KDMG A + +G  I  + + R L I Q  Y ES+ +   QE  +   T    V  + RF ENPG  H  A +K+++YLL TKD  I Y G  G +L  +AY+D+D+    D RRS+S  VLML    + W S+ Q+  A  +++AEY+ALSD VK+
Sbjct:   95 AGIAEKYRIKDMGRAHFILGIEIDYDMERRTLGISQKAYTESITKKFGQENAKPCLTPLEPVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVDIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGVVLMLCGAPVVWLSTFQKTVALSSTEAEYMALSDCVKD 257          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A6G0MKR4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MKR4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.040e-20
Identity = 68/189 (35.98%), Postives = 102/189 (53.97%), Query Frame = 0
Query:    6 AELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQE-----------GKQGT---------GYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQ-GCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQ 173
            A + +KF+ KD+G AR+ +G  I  + K R L I Q  Y+ES+ +   QE           G Q T             V++      NPG  H  A +K+++YLL TKD  I Y G  G +L  +AY+D+D+    D RRS+S  +LML    + W S+ Q+  A  +++AEY+ALSD VKE +++R+
Sbjct:   72 AGIAEKFQIKDLGRARFILGIEIDYDMKRRTLGISQKAYIESITKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKVKSKSYRSLNPGEKHWDAGIKVVRYLLKTKDVDIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGVLLMLCGAPVVWLSTFQKTVALSSTEAEYMALSDCVKECVWMRR 258          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A2N9FS65_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FS65_FAGSY)

HSP 1 Score: 99.4 bits (246), Expect = 1.190e-20
Identity = 61/169 (36.09%), Postives = 93/169 (55.03%), Query Frame = 0
Query:    8 LGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQGTGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQ 176
            L   F+ KDMG+A + +G  ITR+  ++ L + Q  Y++ ++E              V  V R+  NPGPAH +AV +I++YL  T D  + Y   G +L    Y+D+D+ +  D R+S S    +L  GA+SW S  Q   A  T ++EYVA S AV+E ++LR+  Q
Sbjct:  901 LSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILEHI---------CFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY--HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQ 1058          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A438IQ82_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IQ82_VITVI)

HSP 1 Score: 99.0 bits (245), Expect = 1.630e-20
Identity = 66/186 (35.48%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    8 LGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVE-VRRQEGKQGTGYV--------------------GVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLR 172
            L + F   DMG+A Y +G  I R+     L + Q  Y++ ++E    Q    G   +                     V  + R+  +PG  H KA  K+M+YL  TKD+ +TY  +  +L    Y+DSD+G CLD+ +S S  V MLA GAISW S  Q +TAS T +AE+VA  +A    L+LR
Sbjct:  905 LSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1089          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A2N9HBS2_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HBS2_FAGSY)

HSP 1 Score: 98.6 bits (244), Expect = 2.160e-20
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 0
Query:    8 LGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV------EVRRQEGKQGTGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMEL 180
            L   F+ KDM  A + +G  I R+   + L + Q  Y+  ++      + +  +   G G   +  V RF  NPGPAH KAV +I++YL  T D+ + Y  QG +L  + Y+D+D+   LD R+S S    +L  GAI+W S  Q   A    +++YVA S AV+E ++LR+  Q +++
Sbjct:  751 LSSTFEMKDMDKASFMLGVKILRDRSRKLLGLSQETYIRKVLKRFHIQDCKPIDTPVGKGDSLIGLVSRFQSNPGPAHWKAVKRILRYLRGTADYILCY--QGRDLRLRGYSDADWAGDLDERKSTSSYTFLLGGGAITWCSKKQSCVALSMMESKYVACSAAVQEAVWLRRFLQRLDI 927          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A6A3GHT8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GHT8_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.600e-20
Identity = 67/189 (35.45%), Postives = 100/189 (52.91%), Query Frame = 0
Query:    6 AELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQGT------GYVGVRAVVRFCE--------------NPGPAHKKAVMKIMQYLLHTKDWRITYGGQ-GCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQ 173
            A + +K++ KDMG AR+ +G  I  + + R L I Q  Y ES+ +   QE  +        G    +A     E              NPG  H  A +K+++YLL TKD  I Y G  G +L  +AY+D+D+    D RRS+S  VLML    + W S+ Q+  A  +++AEY+ALSD VKE +++R+
Sbjct:   16 AGIAEKYRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESITKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLNPGEKHWDAGIKVVRYLLKTKDVDIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGVVLMLCGAPVVWLSTFQKTVALSSTEAEYMALSDCVKECVWMRR 202          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A6H5JHS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.400e-20
Identity = 67/188 (35.64%), Postives = 95/188 (50.53%), Query Frame = 0
Query:    2 DRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQGTGYVG----------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCE-LCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFM 178
            D+F A+L +    K++GD R Y GC   RN KE E  +   + VE   +   +E      ++           VRAV R+C +P   H KA M  + Y   T  + I+      E    + Y D+DF +    RRS+S  ++    GA+SWYS  Q+  A  T++AEYVAL D VKE+LF RQ  +FM
Sbjct:  283 DKFGADLNKSVPVKNLGDLRCYSGCFYERN-KETEYGV---VGVEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWKAAMDTLGYARRTSHFGISVQRGTVEGFTLEGYADADFASKAADRRSVSGGIVTCGGGAVSWYSIAQKCVALSTTEAEYVALGDVVKEILFSRQIWRFM 466          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3GLU4_9STRA3.080e-2640.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3IH57_9STRA1.880e-2438.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4X8N7_9STRA1.900e-2437.87Mitochondrial protein (Fragment) n=1 Tax=Phytophth... [more]
A0A6A3HBH2_9STRA2.170e-2340.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MKR4_9STRA1.040e-2035.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9FS65_FAGSY1.190e-2036.09Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A438IQ82_VITVI1.630e-2035.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9HBS2_FAGSY2.160e-2034.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3GHT8_9STRA2.600e-2035.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHS1_9PHAE4.400e-2035.64Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 64..173
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 64..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76023contigH-elongata_contig76023:372..1092 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76023.15285.1mRNA_H-elongata_contig76023.15285.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76023 310..1722 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76023.15285.1 ID=prot_H-elongata_contig76023.15285.1|Name=mRNA_H-elongata_contig76023.15285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVE
VRRQEGKQGTGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITY
GGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTA
SGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNVLRIIRGPSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like