mRNA_H-elongata_contig75898.15276.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig75898.15276.1
Unique Name	mRNA_H-elongata_contig75898.15276.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.760e-56
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 1

Query:    4 IQEIVYDEGKAEPEQPRYVVVKLDGYTEAHWSNEDRYRGCVPIAPVETSWSAPGQDHEGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRL 435
            + E+V  +    P+ P YVVVK +GY+   WS+++RYR CVPI+PV+T+W       +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE RL
Sbjct:  129 VVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 266

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BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 5.040e-54
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 1

Query:    4 IQEIVYDEGKAEPEQPRYVVVKLDGYTEAHWSNEDRYRGCVPIAPVETSWSAPGQDHEGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRL 435
            + E+V  +    P+ P YVVVK +GY+   WS+++RYR CVPI+PV+T+W       +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE RL
Sbjct:  303 VVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 440

[Close]

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 7.460e-54
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 1

Query:    4 IQEIVYDEGKAEPEQPRYVVVKLDGYTEAHWSNEDRYRGCVPIAPVETSWSAPGQDHEGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRL 435
            + E+V  +    P+ P YVVVK +GY+   WS+++RYR CVPI+PV+T+W       +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE RL
Sbjct:   20 VVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 157

[Close]

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.310e-50
Identity = 87/142 (61.27%), Postives = 107/142 (75.35%), Query Frame = 1

Query:    4 IQEIVYDEGKAEPEQPRYVVVKLDGYTEAHWSNEDRYRGCVPIAPVETSWSAPGQDHEGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEEC 429
            + E+V  +    P+ P YVVVK +GY+   WS+++RYR CVPI+PV+T+W       +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE 
Sbjct: 1434 VVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEA 1569

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BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.030e-38
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 1

Query:  175 EGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRL 435
            +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE RL
Sbjct:    9 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 95

[Close]

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.360e-38
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 1

Query:  151 WSAPGQDHEGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRL 435
            WS   +D  GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE RL
Sbjct:   67 WSTGRKD--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 159

[Close]

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.530e-38
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 1

Query:  175 EGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRL 435
            +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE RL
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93

[Close]

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.530e-37
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1

Query:  175 EGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEE 426
            +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90

[Close]

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.470e-36
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 1

Query:  175 EGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRL 435
            +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+ P +KAR QEE RL
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93

[Close]

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 9.060e-36
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 1

Query:  175 EGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRL 435
            +GGT  RTQLP +L WAI MHKSQGQTL+K VIDLG KEACTGLTFVCLSRAK+L DL+VEPMSFDR+  LG+   +K R QEE RL
Sbjct:    4 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRL 90

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot

BLAST of mRNA_H-elongata_contig75898.15276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JUS2_9PHAE	6.760e-56	61.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFG8_9PHAE	5.040e-54	61.81	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K4U7_9PHAE	7.460e-54	61.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L976_9PHAE	1.310e-50	61.27	ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ...	[more]
A0A6H5KSF1_9PHAE	1.030e-38	74.71	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMH2_9PHAE	2.360e-38	71.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCP5_9PHAE	6.530e-38	74.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFN2_9PHAE	4.530e-37	75.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN08_9PHAE	1.470e-36	74.71	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K214_9PHAE	9.060e-36	72.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig75898	contig	H-elongata_contig75898:511..948 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	104.0
Seed ortholog evalue	6.1e-20
Seed eggNOG ortholog	400682.PAC_15726636
EggNOG free text desc.	G-quadruplex DNA unwinding
EggNOG OGs	3A1N8@33154,3BR8V@33208,COG0507@1,KOG0987@2759
COG Functional cat.	L
Best tax level	Metazoa
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	438
Cds size	438
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931164.5234134-CDS-H-elongata_contig75898:510..948	1622931164.5234134-CDS-H-elongata_contig75898:510..948	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig75898 511..948 -
1691679724.6116629-CDS-H-elongata_contig75898:510..948	1691679724.6116629-CDS-H-elongata_contig75898:510..948	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig75898 511..948 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig75898.15276.1	prot_H-elongata_contig75898.15276.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig75898 511..948 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig75898:511..948-
coding sequence from alignment at H-elongata_contig75898:511..948-

protein sequence of mRNA_H-elongata_contig75898.15276.1

>prot_H-elongata_contig75898.15276.1 ID=prot_H-elongata_contig75898.15276.1|Name=mRNA_H-elongata_contig75898.15276.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
VIQEIVYDEGKAEPEQPRYVVVKLDGYTEAHWSNEDRYRGCVPIAPVETS
WSAPGQDHEGGTMTRTQLPFKLYWAIPMHKSQGQTLSKVVIDLGEKEACT
GLTFVCLSRAKKLTDLLVEPMSFDRLYGLGDKPVLKARRQEECRLK

mRNA from alignment at H-elongata_contig75898:511..948-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig75898.15276.1 ID=mRNA_H-elongata_contig75898.15276.1|Name=mRNA_H-elongata_contig75898.15276.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig75898:511..948- (Himanthalia elongata Himel1 dioecious)
GTAATCCAAGAGATAGTATACGACGAGGGCAAGGCAGAACCTGAGCAGCC
GCGTTACGTGGTAGTGAAACTGGACGGCTATACAGAAGCACATTGGTCAA
ACGAGGATCGGTATCGAGGTTGTGTTCCAATCGCTCCCGTTGAGACCTCT
TGGTCTGCACCAGGTCAAGACCATGAAGGTGGTACCATGACCAGAACTCA
GCTCCCATTCAAGTTATACTGGGCTATCCCCATGCACAAGAGTCAAGGCC
AGACGTTGTCAAAGGTCGTGATCGATTTGGGGGAAAAGGAAGCGTGCACT
GGATTGACCTTCGTCTGTTTGAGTCGTGCTAAGAAGTTGACTGATTTGCT
GGTAGAACCAATGTCGTTCGATCGTCTCTACGGATTAGGCGATAAGCCTG
TTCTCAAGGCACGTCGACAGGAAGAATGCCGTCTGAAG

Coding sequence (CDS) from alignment at H-elongata_contig75898:511..948-

>mRNA_H-elongata_contig75898.15276.1 ID=mRNA_H-elongata_contig75898.15276.1|Name=mRNA_H-elongata_contig75898.15276.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig75898:511..948- (Himanthalia elongata Himel1 dioecious)
GTAATCCAAGAGATAGTATACGACGAGGGCAAGGCAGAACCTGAGCAGCC
GCGTTACGTGGTAGTGAAACTGGACGGCTATACAGAAGCACATTGGTCAA
ACGAGGATCGGTATCGAGGTTGTGTTCCAATCGCTCCCGTTGAGACCTCT
TGGTCTGCACCAGGTCAAGACCATGAAGGTGGTACCATGACCAGAACTCA
GCTCCCATTCAAGTTATACTGGGCTATCCCCATGCACAAGAGTCAAGGCC
AGACGTTGTCAAAGGTCGTGATCGATTTGGGGGAAAAGGAAGCGTGCACT
GGATTGACCTTCGTCTGTTTGAGTCGTGCTAAGAAGTTGACTGATTTGCT
GGTAGAACCAATGTCGTTCGATCGTCTCTACGGATTAGGCGATAAGCCTG
TTCTCAAGGCACGTCGACAGGAAGAATGCCGTCTGAAGGTAATCCAAGAG
ATAGTATACGACGAGGGCAAGGCAGAACCTGAGCAGCCGCGTTACGTGGT
AGTGAAACTGGACGGCTATACAGAAGCACATTGGTCAAACGAGGATCGGT
ATCGAGGTTGTGTTCCAATCGCTCCCGTTGAGACCTCTTGGTCTGCACCA
GGTCAAGACCATGAAGGTGGTACCATGACCAGAACTCAGCTCCCATTCAA
GTTATACTGGGCTATCCCCATGCACAAGAGTCAAGGCCAGACGTTGTCAA
AGGTCGTGATCGATTTGGGGGAAAAGGAAGCGTGCACTGGATTGACCTTC
GTCTGTTTGAGTCGTGCTAAGAAGTTGACTGATTTGCTGGTAGAACCAAT
GTCGTTCGATCGTCTCTACGGATTAGGCGATAAGCCTGTTCTCAAGGCAC
GTCGACAGGAAGAATGCCGTCTGAAG