mRNA_H-elongata_contig75891.15275.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75891.15275.1
Unique NamemRNA_H-elongata_contig75891.15275.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 3.230e-18
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    4 MVLTTVKSRGTVRLAS-RDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPGK 207
            M++T+VKS+GTVRLAS  D + PPVI+P YFSHP D +A+   WRT+ +AK ET TG+AV G+EL PGK
Sbjct:  451 MLVTSVKSKGTVRLASGTDAAAPPVIDPGYFSHPQDRRAMLECWRTIRRAKRETTTGRAVFGFELLPGK 519          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: UPI0018422DBC (FAD-dependent oxidoreductase n=1 Tax=Catenulispora sp. TaxID=1962977 RepID=UPI0018422DBC)

HSP 1 Score: 56.6 bits (135), Expect = 1.200e-7
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPG 204
            KSRGT+RLAS DP+  P+I+PAY S P D + +  G   + +A    + GK VLG E SPG
Sbjct:  398 KSRGTLRLASTDPTAAPLIDPAYLSDPADARLLLDGMELVREAMAHRSLGKRVLG-ETSPG 457          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: A0A4T0V2W4_9ACTN (Choline dehydrogenase n=2 Tax=Nocardioides TaxID=1839 RepID=A0A4T0V2W4_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 2.010e-6
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPGKG 210
            KSRGT+RLAS DP+  P+I+  YF+HPDD + +A G   + +     A G  V   E+ PG G
Sbjct:  406 KSRGTIRLASSDPTVAPLIDYGYFTHPDDVEVLAQGTEMIREIMAGAAFGGGVKA-EIHPGPG 467          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: A0A4R4S2X4_9ACTN (FAD-dependent oxidoreductase n=3 Tax=unclassified Actinomadura TaxID=2626254 RepID=A0A4R4S2X4_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 5.140e-6
Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1
Query:   22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPG 204
            KSRGTVRLAS DPS  PVI+P Y   PDD + +  G   + +          V G ELSPG
Sbjct:  392 KSRGTVRLASADPSAAPVIDPGYLGEPDDARLLLDGIELVREIMANKIISGGV-GAELSPG 451          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: A0A4D4JEL6_9PSEU (Choline dehydrogenase n=2 Tax=Gandjariella thermophila TaxID=1931992 RepID=A0A4D4JEL6_9PSEU)

HSP 1 Score: 52.0 bits (123), Expect = 5.140e-6
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    7 VLTTV---KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPG 204
            V+TT+   KSRGTVRLAS DP+  P+I+PAY + PDD + +  G + + +          V G EL PG
Sbjct:  384 VMTTLIYPKSRGTVRLASADPTAAPLIDPAYLADPDDARFLIDGMKVVREVMASRRLAGVVTG-ELHPG 451          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: UPI001C63A794 (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Nocardioides panacisoli TaxID=627624 RepID=UPI001C63A794)

HSP 1 Score: 52.0 bits (123), Expect = 5.140e-6
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPG 204
            KSRGT+RLAS DP+  P+I+  YF+HPDD + +A G   + +     A G  V   E+ PG
Sbjct:  409 KSRGTIRLASADPTAAPLIDYGYFTHPDDVEVLAEGTEMIREIMAGAAFGGGVRA-EIHPG 468          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: W9CDP2_SCLBF (Uncharacterized protein n=1 Tax=Sclerotinia borealis (strain F-4128) TaxID=1432307 RepID=W9CDP2_SCLBF)

HSP 1 Score: 51.6 bits (122), Expect = 7.030e-6
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   25 SRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYE 192
            SRG+V+LAS DP+  PVI+P YFS   D   + TG R + +A   TA G+A++  E
Sbjct:  404 SRGSVKLASTDPTAAPVIDPNYFSTEADRYVLRTGLRKIMEAMLSTAEGQALIETE 459          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: UPI00144A4F1E (GMC oxidoreductase n=1 Tax=Macroventuria anomochaeta TaxID=301207 RepID=UPI00144A4F1E)

HSP 1 Score: 51.6 bits (122), Expect = 7.030e-6
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   25 SRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSP 201
            SRG+V LAS DPS  P+I+P+Y++   D   + TG+RT  Q    TA GK ++  E +P
Sbjct:  401 SRGSVTLASSDPSANPIIDPSYYATEADRHVMRTGFRTQSQLMFSTAEGKELVEREHTP 459          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: A0A857JJU0_9ALTE (Alcohol dehydrogenase (Acceptor) n=1 Tax=Paraglaciecola mesophila TaxID=197222 RepID=A0A857JJU0_9ALTE)

HSP 1 Score: 51.2 bits (121), Expect = 9.610e-6
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPGKG 210
            KSRGT+ LAS DP+ P +I+P Y SHPDD+K +  G R   +A  ++       G E+ PG G
Sbjct:  392 KSRGTITLASADPTQPAIIDPQYLSHPDDQKVMIDGIRK-GRAILQSQGFAQYQGEEVLPGAG 453          
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: UPI001886B4E9 (L-sorbose 1-dehydrogenase-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI001886B4E9)

HSP 1 Score: 51.2 bits (121), Expect = 9.670e-6
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    7 VLTTVKSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATG 129
            +L  +KSRG VRL + DP  PP+I+P YFSHP+D K  A G
Sbjct:  447 ILNRLKSRGYVRLRTTDPDDPPIIDPRYFSHPEDIKVAAEG 487          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2G8_ECTSI3.230e-1860.87Glucose-methanol-choline oxidoreductase n=2 Tax=Ec... [more]
UPI0018422DBC1.200e-749.18FAD-dependent oxidoreductase n=1 Tax=Catenulispora... [more]
A0A4T0V2W4_9ACTN2.010e-644.44Choline dehydrogenase n=2 Tax=Nocardioides TaxID=1... [more]
A0A4R4S2X4_9ACTN5.140e-647.54FAD-dependent oxidoreductase n=3 Tax=unclassified ... [more]
A0A4D4JEL6_9PSEU5.140e-643.48Choline dehydrogenase n=2 Tax=Gandjariella thermop... [more]
UPI001C63A7945.140e-644.26GMC family oxidoreductase N-terminal domain-contai... [more]
W9CDP2_SCLBF7.030e-646.43Uncharacterized protein n=1 Tax=Sclerotinia boreal... [more]
UPI00144A4F1E7.030e-644.07GMC oxidoreductase n=1 Tax=Macroventuria anomochae... [more]
A0A857JJU0_9ALTE9.610e-644.44Alcohol dehydrogenase (Acceptor) n=1 Tax=Paraglaci... [more]
UPI001886B4E99.670e-656.10L-sorbose 1-dehydrogenase-like n=1 Tax=Rhipicephal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75891contigH-elongata_contig75891:304..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D7G2G8
EggNOG free text desc.flavin adenine dinucleotide binding
EggNOG OGsCOG2303@1,KOG1238@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size210
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.4492824-UTR-H-elongata_contig75891:303..3061622931164.4492824-UTR-H-elongata_contig75891:303..306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75891 304..306 +
1691679724.5916393-UTR-H-elongata_contig75891:303..3061691679724.5916393-UTR-H-elongata_contig75891:303..306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75891 304..306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.474508-CDS-H-elongata_contig75891:306..5161622931164.474508-CDS-H-elongata_contig75891:306..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75891 307..516 +
1691679724.6035097-CDS-H-elongata_contig75891:306..5161691679724.6035097-CDS-H-elongata_contig75891:306..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75891 307..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75891.15275.1prot_H-elongata_contig75891.15275.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75891 307..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75891.15275.1

>prot_H-elongata_contig75891.15275.1 ID=prot_H-elongata_contig75891.15275.1|Name=mRNA_H-elongata_contig75891.15275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MVLTTVKSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAK
TETATGKAVLGYELSPGKG*
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mRNA from alignment at H-elongata_contig75891:304..516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75891.15275.1 ID=mRNA_H-elongata_contig75891.15275.1|Name=mRNA_H-elongata_contig75891.15275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig75891:304..516+ (Himanthalia elongata Himel1 dioecious)
AATATGGTGCTCACAACGGTAAAGAGCCGGGGAACAGTTCGCCTGGCGTC GAGGGACCCCTCGTGTCCCCCTGTAATCAATCCGGCGTATTTCTCTCACC CCGATGACGAGAAAGCTGTTGCAACAGGCTGGCGTACACTGTGGCAAGCC AAGACAGAAACGGCGACGGGAAAAGCGGTTTTAGGCTACGAGCTTTCGCC GGGAAAGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig75891:304..516+

>mRNA_H-elongata_contig75891.15275.1 ID=mRNA_H-elongata_contig75891.15275.1|Name=mRNA_H-elongata_contig75891.15275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig75891:304..516+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCTCACAACGGTAAAGAGCCGGGGAACAGTTCGCCTGGCGTCGAG
GGACCCCTCGTGTCCCCCTGTAATCAATCCGGCGTATTTCTCTCACCCCG
ATGACGAGAAAGCTGTTGCAACAGGCTGGCGTACACTGTGGCAAGCCAAG
ACAGAAACGGCGACGGGAAAAGCGGTTTTAGGCTACGAGCTTTCGCCGGG
AAAGGGGTAAATGGTGCTCACAACGGTAAAGAGCCGGGGAACAGTTCGCC
TGGCGTCGAGGGACCCCTCGTGTCCCCCTGTAATCAATCCGGCGTATTTC
TCTCACCCCGATGACGAGAAAGCTGTTGCAACAGGCTGGCGTACACTGTG
GCAAGCCAAGACAGAAACGGCGACGGGAAAAGCGGTTTTAGGCTACGAGC
TTTCGCCGGGAAAGGGGTAA
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