mRNA_H-elongata_contig75891.15275.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 3.230e-18 Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 4 MVLTTVKSRGTVRLAS-RDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPGK 207
M++T+VKS+GTVRLAS D + PPVI+P YFSHP D +A+ WRT+ +AK ET TG+AV G+EL PGK
Sbjct: 451 MLVTSVKSKGTVRLASGTDAAAPPVIDPGYFSHPQDRRAMLECWRTIRRAKRETTTGRAVFGFELLPGK 519
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: UPI0018422DBC (FAD-dependent oxidoreductase n=1 Tax=Catenulispora sp. TaxID=1962977 RepID=UPI0018422DBC) HSP 1 Score: 56.6 bits (135), Expect = 1.200e-7 Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPG 204
KSRGT+RLAS DP+ P+I+PAY S P D + + G + +A + GK VLG E SPG
Sbjct: 398 KSRGTLRLASTDPTAAPLIDPAYLSDPADARLLLDGMELVREAMAHRSLGKRVLG-ETSPG 457
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: A0A4T0V2W4_9ACTN (Choline dehydrogenase n=2 Tax=Nocardioides TaxID=1839 RepID=A0A4T0V2W4_9ACTN) HSP 1 Score: 53.1 bits (126), Expect = 2.010e-6 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPGKG 210
KSRGT+RLAS DP+ P+I+ YF+HPDD + +A G + + A G V E+ PG G
Sbjct: 406 KSRGTIRLASSDPTVAPLIDYGYFTHPDDVEVLAQGTEMIREIMAGAAFGGGVKA-EIHPGPG 467
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: A0A4R4S2X4_9ACTN (FAD-dependent oxidoreductase n=3 Tax=unclassified Actinomadura TaxID=2626254 RepID=A0A4R4S2X4_9ACTN) HSP 1 Score: 52.0 bits (123), Expect = 5.140e-6 Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1
Query: 22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPG 204
KSRGTVRLAS DPS PVI+P Y PDD + + G + + V G ELSPG
Sbjct: 392 KSRGTVRLASADPSAAPVIDPGYLGEPDDARLLLDGIELVREIMANKIISGGV-GAELSPG 451
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: A0A4D4JEL6_9PSEU (Choline dehydrogenase n=2 Tax=Gandjariella thermophila TaxID=1931992 RepID=A0A4D4JEL6_9PSEU) HSP 1 Score: 52.0 bits (123), Expect = 5.140e-6 Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 1
Query: 7 VLTTV---KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPG 204
V+TT+ KSRGTVRLAS DP+ P+I+PAY + PDD + + G + + + V G EL PG
Sbjct: 384 VMTTLIYPKSRGTVRLASADPTAAPLIDPAYLADPDDARFLIDGMKVVREVMASRRLAGVVTG-ELHPG 451
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: UPI001C63A794 (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Nocardioides panacisoli TaxID=627624 RepID=UPI001C63A794) HSP 1 Score: 52.0 bits (123), Expect = 5.140e-6 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPG 204
KSRGT+RLAS DP+ P+I+ YF+HPDD + +A G + + A G V E+ PG
Sbjct: 409 KSRGTIRLASADPTAAPLIDYGYFTHPDDVEVLAEGTEMIREIMAGAAFGGGVRA-EIHPG 468
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: W9CDP2_SCLBF (Uncharacterized protein n=1 Tax=Sclerotinia borealis (strain F-4128) TaxID=1432307 RepID=W9CDP2_SCLBF) HSP 1 Score: 51.6 bits (122), Expect = 7.030e-6 Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 25 SRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYE 192
SRG+V+LAS DP+ PVI+P YFS D + TG R + +A TA G+A++ E
Sbjct: 404 SRGSVKLASTDPTAAPVIDPNYFSTEADRYVLRTGLRKIMEAMLSTAEGQALIETE 459
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: UPI00144A4F1E (GMC oxidoreductase n=1 Tax=Macroventuria anomochaeta TaxID=301207 RepID=UPI00144A4F1E) HSP 1 Score: 51.6 bits (122), Expect = 7.030e-6 Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 25 SRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSP 201
SRG+V LAS DPS P+I+P+Y++ D + TG+RT Q TA GK ++ E +P
Sbjct: 401 SRGSVTLASSDPSANPIIDPSYYATEADRHVMRTGFRTQSQLMFSTAEGKELVEREHTP 459
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: A0A857JJU0_9ALTE (Alcohol dehydrogenase (Acceptor) n=1 Tax=Paraglaciecola mesophila TaxID=197222 RepID=A0A857JJU0_9ALTE) HSP 1 Score: 51.2 bits (121), Expect = 9.610e-6 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 22 KSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKTETATGKAVLGYELSPGKG 210
KSRGT+ LAS DP+ P +I+P Y SHPDD+K + G R +A ++ G E+ PG G
Sbjct: 392 KSRGTITLASADPTQPAIIDPQYLSHPDDQKVMIDGIRK-GRAILQSQGFAQYQGEEVLPGAG 453
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Match: UPI001886B4E9 (L-sorbose 1-dehydrogenase-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI001886B4E9) HSP 1 Score: 51.2 bits (121), Expect = 9.670e-6 Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query: 7 VLTTVKSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATG 129
+L +KSRG VRL + DP PP+I+P YFSHP+D K A G
Sbjct: 447 ILNRLKSRGYVRLRTTDPDDPPIIDPRYFSHPEDIKVAAEG 487 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75891.15275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75891.15275.1 >prot_H-elongata_contig75891.15275.1 ID=prot_H-elongata_contig75891.15275.1|Name=mRNA_H-elongata_contig75891.15275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp MVLTTVKSRGTVRLASRDPSCPPVINPAYFSHPDDEKAVATGWRTLWQAKback to top mRNA from alignment at H-elongata_contig75891:304..516+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75891.15275.1 ID=mRNA_H-elongata_contig75891.15275.1|Name=mRNA_H-elongata_contig75891.15275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig75891:304..516+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75891:304..516+ >mRNA_H-elongata_contig75891.15275.1 ID=mRNA_H-elongata_contig75891.15275.1|Name=mRNA_H-elongata_contig75891.15275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig75891:304..516+ (Himanthalia elongata Himel1 dioecious)back to top |