mRNA_H-elongata_contig75661.15250.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: D7FLD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD9_ECTSI) HSP 1 Score: 321 bits (822), Expect = 6.730e-108 Identity = 145/174 (83.33%), Postives = 155/174 (89.08%), Query Frame = 1
Query: 94 EWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEH-GPVPSPQY 612
EWH TFIQDSKLGCN+VSWAP+NSLGSREG YMRLVTGSCDNRVR WRCAVG T W+E+G+ D+SPRHSDWVRDVAWAP+TGMPCNIVASCSEDR V+IWTQSQA+GPW+AAEMKTF APVWRVSWSITGNVLAVSSG SDVSLWKQNL G WECISTV E GP PSP Y
Sbjct: 142 EWHTTFIQDSKLGCNSVSWAPFNSLGSREGEKVYMRLVTGSCDNRVRFWRCAVGETVWKEDGSSHDSSPRHSDWVRDVAWAPATGMPCNIVASCSEDRGVVIWTQSQASGPWAAAEMKTFPAPVWRVSWSITGNVLAVSSGDSDVSLWKQNLEGAWECISTVPEEAGPTPSPHY 315
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: W2QRD8_PHYPN (Protein transporter SEC13 n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QRD8_PHYPN) HSP 1 Score: 237 bits (605), Expect = 6.210e-76 Identity = 111/199 (55.78%), Postives = 138/199 (69.35%), Query Frame = 1
Query: 1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPV 597
SIAWAPHE GL LACAS+DG VS+L + P + W + +DS LGCNAVSWAP+NS+GS+ R+VT SCD ++IW G +EW ++ A P HSDWVRDVAWAPSTG+P N++ASCSED+ V IW+Q+ W + TF APVWRVSWS+TGNVLAVSSG V+LWK+ L W IS+V E G +
Sbjct: 46 SIAWAPHEYGLALACASADGTVSVLSYSP-EGWSVSHFKDSALGCNAVSWAPFNSVGSQGPSGPIRRVVTASCDKTIKIWSLPEGESEWTKQ--ELSAVPAHSDWVRDVAWAPSTGLPVNLIASCSEDKHVYIWSQTAEDSSWKRELLHTFDAPVWRVSWSVTGNVLAVSSGDHKVTLWKETLDKKWIQISSVDEAGAI 241
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A7S0C2K8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2K8_9STRA) HSP 1 Score: 229 bits (583), Expect = 5.720e-72 Identity = 114/206 (55.34%), Postives = 144/206 (69.90%), Query Frame = 1
Query: 1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTT----EWQEEGNVQDASPRHSDWVRDVAWAP-STGMPCNIVASCSEDRSVIIWTQSQAA----GPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHG 591
S+A+APHE GL+LACASSDGRVS+L HQ +D W ++ ++DS LG NAVSWAPY S E + + LVTG CDNR+R W A G + EW EE +V + RH+DWVRDVAWAP ST +VASCSED +VI+WT++ + G W A + TF PVWR+SWS+TG++LAVSSG V+LWK NL GTW+ +STV E G
Sbjct: 79 SVAFAPHEHGLMLACASSDGRVSVLTHQNDDSWTSSVLRDSALGVNAVSWAPYTPTDSTEEFSS-LSLVTGGCDNRIRFWTHAQGQSAVGAEWVEETDVLGGTLRHTDWVRDVAWAPGSTTSKMTMVASCSEDGTVIVWTRTSSVESGEGKWMPALLHTFDGPVWRLSWSVTGHILAVSSGDDSVTLWKANLDGTWQEVSTVEEVG 283
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A836CBZ9_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ9_9STRA) HSP 1 Score: 228 bits (580), Expect = 3.800e-71 Identity = 104/190 (54.74%), Postives = 130/190 (68.42%), Query Frame = 1
Query: 67 SILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREG--GAEYMRLVTGSCDNRVRIWRCAV---------GTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPVPS 603
SILQH +D W + QD KLGCNAVSWAPY S G ++ G + MRLVTGSCDNRVR+W+C G W +E + + P H+DWVRDVAWAP+TGMP N +ASC ED++V IWTQ + W+ +M F+APVWR+SWS+TGNVLAVS G DV+LWKQN+ G WE +S+V E G P+
Sbjct: 132 SILQHMDDDSWQVSTFQDGKLGCNAVSWAPYGSGGGKDDAMGRDVMRLVTGSCDNRVRVWKCPAPTAGEVLGQGQLVWTDE--LTHSEPAHTDWVRDVAWAPATGMPFNTIASCGEDKAVYIWTQQEGGTEWTLTKMHEFSAPVWRLSWSVTGNVLAVSHGDDDVTLWKQNIEGRWEMVSSVEEGGRGPN 319
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A662WIR4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WIR4_9STRA) HSP 1 Score: 224 bits (572), Expect = 5.490e-68 Identity = 110/199 (55.28%), Postives = 132/199 (66.33%), Query Frame = 1
Query: 1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPV 597
SIAWAPHE GL LACAS+DG VS DS LGCNAVSWAP+NS+GS+ R+VT SCD ++IW A G TEW ++ ++P HSDWVRDVAWAPSTG+P N++ASCSED+ V IW+QS W + TF APVWRVSWS+TGNVLAVSSG V+LWK+ L W IS+V E G +
Sbjct: 303 SIAWAPHEYGLSLACASADGTVS----------------DSALGCNAVSWAPFNSVGSQGPSGPIRRVVTASCDKTIKIWSLAEGETEWLKQ--ELSSAPAHSDWVRDVAWAPSTGLPVNLIASCSEDKHVYIWSQSAEDSAWKRELLHTFDAPVWRVSWSVTGNVLAVSSGDHKVTLWKETLDKKWIQISSVDEAGAI 483
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: K3XB55_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XB55_GLOUD) HSP 1 Score: 208 bits (530), Expect = 9.420e-64 Identity = 97/178 (54.49%), Postives = 124/178 (69.66%), Query Frame = 1
Query: 64 VSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPV 597
VS++ + + W + +DS LGCNAVSWAP+N+LGS+ R+VT SCD ++IW A G TEW +E ++ A P HSDWVRD AWAPSTGMP N++ASCSED+ V IW+Q++ GPW + TF APVWRVSWS+TGNVLAVSSG V+LWK+ L W IS+V E G +
Sbjct: 130 VSVISYS-TEGWSVSHFKDSSLGCNAVSWAPFNALGSKGETGPIRRIVTASCDKTIKIWSLAEGQTEWTKE-DISSA-PAHSDWVRDAAWAPSTGMPVNLIASCSEDKHVYIWSQTEENGPWKRELLHTFEAPVWRVSWSVTGNVLAVSSGDHKVTLWKETLDKKWIQISSVDEAGTL 304
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A6A0H1M0_HYAAZ (Protein SEC13 homolog n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H1M0_HYAAZ) HSP 1 Score: 205 bits (522), Expect = 2.400e-62 Identity = 101/192 (52.60%), Postives = 128/192 (66.67%), Query Frame = 1
Query: 1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDS-KLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECIS 573
S+ WAPHELGL+LACASSDG VS+L + WHA I ++ +GCNAVSWAP S GG RLVTG CD+ V+IWR G EW EE ++ HSDWVRDVAWAPS G+ +++ASCS+D V+IWT G + + E+ +F +W VSWS+TGN+LAVS G + VSLWK+N G W C+S
Sbjct: 117 SVCWAPHELGLMLACASSDGSVSVLTYTAAHTWHAVKITNAHNVGCNAVSWAPAVS----SGGLTQQRLVTGGCDSYVKIWRYESG--EWVEEAKLEG----HSDWVRDVAWAPSCGLGTSVIASCSQDCRVLIWTGDN--GQFRSKELPSFADVIWHVSWSVTGNILAVSGGDNRVSLWKENTEGQWVCLS 296
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A067C8H3_SAPPC (Uncharacterized protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8H3_SAPPC) HSP 1 Score: 205 bits (521), Expect = 3.300e-62 Identity = 101/205 (49.27%), Postives = 137/205 (66.83%), Query Frame = 1
Query: 1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHAT-FIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRC--AVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPVPSP 606
+I +APHE GL+LA AS+DG V++L + W T D+ +GC A+SWAPYNSLG G + RLV G CD+ V+IW A + WQ +++ P H DWVRDV WAPS GMPCN +ASCS+D +V +WTQS A GPWS+ + TF +PV+R+SWSITGN+L+V++G VSLWK++ GTW +S++ E +P
Sbjct: 123 AIDFAPHEYGLMLASASADGTVAVLT-MTREGWVTTSHFHDNDVGCMALSWAPYNSLG----GQGHKRLVVGGCDSLVKIWTLSDADSSRTWQR---IEELPPLHGDWVRDVLWAPSAGMPCNTIASCSDDHTVAVWTQSTAGGPWSSVVLPTFKSPVFRLSWSITGNILSVAAGEDHVSLWKESN-GTWRQLSSLQEGSASINP 318
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: UPI001E1D932E (protein SEC13 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D932E) HSP 1 Score: 202 bits (514), Expect = 3.150e-61 Identity = 107/209 (51.20%), Postives = 135/209 (64.59%), Query Frame = 1
Query: 1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSK-LGCNAVSWAPY---NSLGSREGG-AEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAE-HGPVPSPQ 609
S+ +APHELGL+LAC SSDG VS+L + W A I+ + +GCNAVSWAP N+L + G A +LV+G CDN V+IWR G EW EE ++ HSDWVRDVAWAPS G+P +I+ASCS+D VIIWT + WS++ + F VW +SWSITGN+LAVS G + VSLWK+ L G W CIS V + G V Q
Sbjct: 108 SVCFAPHELGLVLACGSSDGSVSVLSSTGDGSWDAKKIKSAHTIGCNAVSWAPALSPNALFEQTGRPALVKKLVSGGCDNLVKIWREEDG--EWIEEQKLEG----HSDWVRDVAWAPSIGLPKSIIASCSQDCRVIIWTNDGTSNNWSSSVLNKFKDVVWHLSWSITGNILAVSGGDNKVSLWKETLEGQWVCISDVKKGQGQVTDSQ 310
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: D0NKZ1_PHYIT (Protein transport protein SEC13 n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NKZ1_PHYIT) HSP 1 Score: 201 bits (511), Expect = 7.100e-61 Identity = 96/180 (53.33%), Postives = 121/180 (67.22%), Query Frame = 1
Query: 64 VSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEW--QEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPV 597
VS+L + P + W + +DS LGCNAVSWAP+NS+GS+ R++T SCD ++IW G TEW QE +V P HSDWVRDVAWAPSTG+P N++ASCSED+ V IW+Q+ W + TF APVWRVSWS+TGNVLAVSSG V+LWK+ L W IS+V E G +
Sbjct: 130 VSVLSYSP-EGWSVSHFKDSALGCNAVSWAPFNSVGSQGPSGPIRRVMTASCDKTIKIWSLPEGETEWTKQELSSV----PAHSDWVRDVAWAPSTGLPVNLIASCSEDKHVYIWSQTAEDSSWKRELLHTFDAPVWRVSWSVTGNVLAVSSGDHKVTLWKETLDKKWIQISSVDEAGAI 304 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75661.15250.1 >prot_H-elongata_contig75661.15250.1 ID=prot_H-elongata_contig75661.15250.1|Name=mRNA_H-elongata_contig75661.15250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSKLGCNAVSWback to top mRNA from alignment at H-elongata_contig75661:1129..1862- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75661.15250.1 ID=mRNA_H-elongata_contig75661.15250.1|Name=mRNA_H-elongata_contig75661.15250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=734bp|location=Sequence derived from alignment at H-elongata_contig75661:1129..1862- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75661:1129..1862- >mRNA_H-elongata_contig75661.15250.1 ID=mRNA_H-elongata_contig75661.15250.1|Name=mRNA_H-elongata_contig75661.15250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig75661:1129..1862- (Himanthalia elongata Himel1 dioecious)back to top |