mRNA_H-elongata_contig75661.15250.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75661.15250.1
Unique NamemRNA_H-elongata_contig75661.15250.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: D7FLD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD9_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 6.730e-108
Identity = 145/174 (83.33%), Postives = 155/174 (89.08%), Query Frame = 1
Query:   94 EWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEH-GPVPSPQY 612
            EWH TFIQDSKLGCN+VSWAP+NSLGSREG   YMRLVTGSCDNRVR WRCAVG T W+E+G+  D+SPRHSDWVRDVAWAP+TGMPCNIVASCSEDR V+IWTQSQA+GPW+AAEMKTF APVWRVSWSITGNVLAVSSG SDVSLWKQNL G WECISTV E  GP PSP Y
Sbjct:  142 EWHTTFIQDSKLGCNSVSWAPFNSLGSREGEKVYMRLVTGSCDNRVRFWRCAVGETVWKEDGSSHDSSPRHSDWVRDVAWAPATGMPCNIVASCSEDRGVVIWTQSQASGPWAAAEMKTFPAPVWRVSWSITGNVLAVSSGDSDVSLWKQNLEGAWECISTVPEEAGPTPSPHY 315          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: W2QRD8_PHYPN (Protein transporter SEC13 n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QRD8_PHYPN)

HSP 1 Score: 237 bits (605), Expect = 6.210e-76
Identity = 111/199 (55.78%), Postives = 138/199 (69.35%), Query Frame = 1
Query:    1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPV 597
            SIAWAPHE GL LACAS+DG VS+L + P + W  +  +DS LGCNAVSWAP+NS+GS+       R+VT SCD  ++IW    G +EW ++     A P HSDWVRDVAWAPSTG+P N++ASCSED+ V IW+Q+     W    + TF APVWRVSWS+TGNVLAVSSG   V+LWK+ L   W  IS+V E G +
Sbjct:   46 SIAWAPHEYGLALACASADGTVSVLSYSP-EGWSVSHFKDSALGCNAVSWAPFNSVGSQGPSGPIRRVVTASCDKTIKIWSLPEGESEWTKQ--ELSAVPAHSDWVRDVAWAPSTGLPVNLIASCSEDKHVYIWSQTAEDSSWKRELLHTFDAPVWRVSWSVTGNVLAVSSGDHKVTLWKETLDKKWIQISSVDEAGAI 241          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A7S0C2K8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2K8_9STRA)

HSP 1 Score: 229 bits (583), Expect = 5.720e-72
Identity = 114/206 (55.34%), Postives = 144/206 (69.90%), Query Frame = 1
Query:    1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTT----EWQEEGNVQDASPRHSDWVRDVAWAP-STGMPCNIVASCSEDRSVIIWTQSQAA----GPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHG 591
            S+A+APHE GL+LACASSDGRVS+L HQ +D W ++ ++DS LG NAVSWAPY    S E  +  + LVTG CDNR+R W  A G +    EW EE +V   + RH+DWVRDVAWAP ST     +VASCSED +VI+WT++ +     G W  A + TF  PVWR+SWS+TG++LAVSSG   V+LWK NL GTW+ +STV E G
Sbjct:   79 SVAFAPHEHGLMLACASSDGRVSVLTHQNDDSWTSSVLRDSALGVNAVSWAPYTPTDSTEEFSS-LSLVTGGCDNRIRFWTHAQGQSAVGAEWVEETDVLGGTLRHTDWVRDVAWAPGSTTSKMTMVASCSEDGTVIVWTRTSSVESGEGKWMPALLHTFDGPVWRLSWSVTGHILAVSSGDDSVTLWKANLDGTWQEVSTVEEVG 283          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A836CBZ9_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ9_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.800e-71
Identity = 104/190 (54.74%), Postives = 130/190 (68.42%), Query Frame = 1
Query:   67 SILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREG--GAEYMRLVTGSCDNRVRIWRCAV---------GTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPVPS 603
            SILQH  +D W  +  QD KLGCNAVSWAPY S G ++   G + MRLVTGSCDNRVR+W+C           G   W +E  +  + P H+DWVRDVAWAP+TGMP N +ASC ED++V IWTQ +    W+  +M  F+APVWR+SWS+TGNVLAVS G  DV+LWKQN+ G WE +S+V E G  P+
Sbjct:  132 SILQHMDDDSWQVSTFQDGKLGCNAVSWAPYGSGGGKDDAMGRDVMRLVTGSCDNRVRVWKCPAPTAGEVLGQGQLVWTDE--LTHSEPAHTDWVRDVAWAPATGMPFNTIASCGEDKAVYIWTQQEGGTEWTLTKMHEFSAPVWRLSWSVTGNVLAVSHGDDDVTLWKQNIEGRWEMVSSVEEGGRGPN 319          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A662WIR4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WIR4_9STRA)

HSP 1 Score: 224 bits (572), Expect = 5.490e-68
Identity = 110/199 (55.28%), Postives = 132/199 (66.33%), Query Frame = 1
Query:    1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPV 597
            SIAWAPHE GL LACAS+DG VS                DS LGCNAVSWAP+NS+GS+       R+VT SCD  ++IW  A G TEW ++     ++P HSDWVRDVAWAPSTG+P N++ASCSED+ V IW+QS     W    + TF APVWRVSWS+TGNVLAVSSG   V+LWK+ L   W  IS+V E G +
Sbjct:  303 SIAWAPHEYGLSLACASADGTVS----------------DSALGCNAVSWAPFNSVGSQGPSGPIRRVVTASCDKTIKIWSLAEGETEWLKQ--ELSSAPAHSDWVRDVAWAPSTGLPVNLIASCSEDKHVYIWSQSAEDSAWKRELLHTFDAPVWRVSWSVTGNVLAVSSGDHKVTLWKETLDKKWIQISSVDEAGAI 483          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: K3XB55_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XB55_GLOUD)

HSP 1 Score: 208 bits (530), Expect = 9.420e-64
Identity = 97/178 (54.49%), Postives = 124/178 (69.66%), Query Frame = 1
Query:   64 VSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPV 597
            VS++ +   + W  +  +DS LGCNAVSWAP+N+LGS+       R+VT SCD  ++IW  A G TEW +E ++  A P HSDWVRD AWAPSTGMP N++ASCSED+ V IW+Q++  GPW    + TF APVWRVSWS+TGNVLAVSSG   V+LWK+ L   W  IS+V E G +
Sbjct:  130 VSVISYS-TEGWSVSHFKDSSLGCNAVSWAPFNALGSKGETGPIRRIVTASCDKTIKIWSLAEGQTEWTKE-DISSA-PAHSDWVRDAAWAPSTGMPVNLIASCSEDKHVYIWSQTEENGPWKRELLHTFEAPVWRVSWSVTGNVLAVSSGDHKVTLWKETLDKKWIQISSVDEAGTL 304          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A6A0H1M0_HYAAZ (Protein SEC13 homolog n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H1M0_HYAAZ)

HSP 1 Score: 205 bits (522), Expect = 2.400e-62
Identity = 101/192 (52.60%), Postives = 128/192 (66.67%), Query Frame = 1
Query:    1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDS-KLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECIS 573
            S+ WAPHELGL+LACASSDG VS+L +     WHA  I ++  +GCNAVSWAP  S     GG    RLVTG CD+ V+IWR   G  EW EE  ++     HSDWVRDVAWAPS G+  +++ASCS+D  V+IWT     G + + E+ +F   +W VSWS+TGN+LAVS G + VSLWK+N  G W C+S
Sbjct:  117 SVCWAPHELGLMLACASSDGSVSVLTYTAAHTWHAVKITNAHNVGCNAVSWAPAVS----SGGLTQQRLVTGGCDSYVKIWRYESG--EWVEEAKLEG----HSDWVRDVAWAPSCGLGTSVIASCSQDCRVLIWTGDN--GQFRSKELPSFADVIWHVSWSVTGNILAVSGGDNRVSLWKENTEGQWVCLS 296          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: A0A067C8H3_SAPPC (Uncharacterized protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8H3_SAPPC)

HSP 1 Score: 205 bits (521), Expect = 3.300e-62
Identity = 101/205 (49.27%), Postives = 137/205 (66.83%), Query Frame = 1
Query:    1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHAT-FIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRC--AVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPVPSP 606
            +I +APHE GL+LA AS+DG V++L     + W  T    D+ +GC A+SWAPYNSLG    G  + RLV G CD+ V+IW    A  +  WQ    +++  P H DWVRDV WAPS GMPCN +ASCS+D +V +WTQS A GPWS+  + TF +PV+R+SWSITGN+L+V++G   VSLWK++  GTW  +S++ E     +P
Sbjct:  123 AIDFAPHEYGLMLASASADGTVAVLT-MTREGWVTTSHFHDNDVGCMALSWAPYNSLG----GQGHKRLVVGGCDSLVKIWTLSDADSSRTWQR---IEELPPLHGDWVRDVLWAPSAGMPCNTIASCSDDHTVAVWTQSTAGGPWSSVVLPTFKSPVFRLSWSITGNILSVAAGEDHVSLWKESN-GTWRQLSSLQEGSASINP 318          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: UPI001E1D932E (protein SEC13 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D932E)

HSP 1 Score: 202 bits (514), Expect = 3.150e-61
Identity = 107/209 (51.20%), Postives = 135/209 (64.59%), Query Frame = 1
Query:    1 SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSK-LGCNAVSWAPY---NSLGSREGG-AEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAE-HGPVPSPQ 609
            S+ +APHELGL+LAC SSDG VS+L    +  W A  I+ +  +GCNAVSWAP    N+L  + G  A   +LV+G CDN V+IWR   G  EW EE  ++     HSDWVRDVAWAPS G+P +I+ASCS+D  VIIWT    +  WS++ +  F   VW +SWSITGN+LAVS G + VSLWK+ L G W CIS V +  G V   Q
Sbjct:  108 SVCFAPHELGLVLACGSSDGSVSVLSSTGDGSWDAKKIKSAHTIGCNAVSWAPALSPNALFEQTGRPALVKKLVSGGCDNLVKIWREEDG--EWIEEQKLEG----HSDWVRDVAWAPSIGLPKSIIASCSQDCRVIIWTNDGTSNNWSSSVLNKFKDVVWHLSWSITGNILAVSGGDNKVSLWKETLEGQWVCISDVKKGQGQVTDSQ 310          
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Match: D0NKZ1_PHYIT (Protein transport protein SEC13 n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NKZ1_PHYIT)

HSP 1 Score: 201 bits (511), Expect = 7.100e-61
Identity = 96/180 (53.33%), Postives = 121/180 (67.22%), Query Frame = 1
Query:   64 VSILQHQPNDEWHATFIQDSKLGCNAVSWAPYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEW--QEEGNVQDASPRHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKTFTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPV 597
            VS+L + P + W  +  +DS LGCNAVSWAP+NS+GS+       R++T SCD  ++IW    G TEW  QE  +V    P HSDWVRDVAWAPSTG+P N++ASCSED+ V IW+Q+     W    + TF APVWRVSWS+TGNVLAVSSG   V+LWK+ L   W  IS+V E G +
Sbjct:  130 VSVLSYSP-EGWSVSHFKDSALGCNAVSWAPFNSVGSQGPSGPIRRVMTASCDKTIKIWSLPEGETEWTKQELSSV----PAHSDWVRDVAWAPSTGLPVNLIASCSEDKHVYIWSQTAEDSSWKRELLHTFDAPVWRVSWSVTGNVLAVSSGDHKVTLWKETLDKKWIQISSVDEAGAI 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75661.15250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLD9_ECTSI6.730e-10883.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W2QRD8_PHYPN6.210e-7655.78Protein transporter SEC13 n=1 Tax=Phytophthora par... [more]
A0A7S0C2K8_9STRA5.720e-7255.34Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A836CBZ9_9STRA3.800e-7154.74WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A662WIR4_9STRA5.490e-6855.28Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
K3XB55_GLOUD9.420e-6454.49Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A6A0H1M0_HYAAZ2.400e-6252.60Protein SEC13 homolog n=2 Tax=Hyalella azteca TaxI... [more]
A0A067C8H3_SAPPC3.300e-6249.27Uncharacterized protein (Fragment) n=2 Tax=Saprole... [more]
UPI001E1D932E3.150e-6151.20protein SEC13 homolog n=1 Tax=Mercenaria mercenari... [more]
D0NKZ1_PHYIT7.100e-6153.33Protein transport protein SEC13 n=16 Tax=Peronospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75661contigH-elongata_contig75661:1129..1862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue4.5e-85
Seed eggNOG ortholog2880.D7FLD9
Preferred nameSEC13
KEGG koko:K14004
KEGG Pathwayko03013,ko04141,ko04150,map03013,map04141,map04150
KEGG ModuleM00404,M00427
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000323,GO:0000785,GO:0000819,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003674,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005730,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006323,GO:0006355,GO:0006357,GO:0006508,GO:0006511,GO:0006606,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006913,GO:0006950,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0007346,GO:0007389,GO:0007591,GO:0008104,GO:0008150,GO:0008152,GO:0008363,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009792,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010973,GO:0012505,GO:0012506,GO:0012507,GO:0014070,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019941,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030163,GO:0030261,GO:0030433,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031080,GO:0031081,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031410,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032008,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032870,GO:0032954,GO:0032955,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0033993,GO:0034504,GO:0034605,GO:0034613,GO:0034622,GO:0034629,GO:0034976,GO:0035017,GO:0035075,GO:0035077,GO:0035079,GO:0035293,GO:0035459,GO:0035859,GO:0036314,GO:0036315,GO:0036503,GO:0040003,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042802,GO:0042886,GO:0043085,GO:0043087,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043547,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048285,GO:0048475,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051302,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051664,GO:0051668,GO:0051716,GO:0051726,GO:0051781,GO:0060255,GO:0060260,GO:0060261,GO:0061024,GO:0061700,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071310,GO:0071390,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0080090,GO:0090068,GO:0090110,GO:0090114,GO:0097305,GO:0097306,GO:0097708,GO:0098588,GO:0098687,GO:0098796,GO:0098805,GO:0098813,GO:0098827,GO:0098852,GO:0140014,GO:1901564,GO:1901565,GO:1901575,GO:1901654,GO:1901655,GO:1901698,GO:1901700,GO:1901701,GO:1901891,GO:1901893,GO:1902412,GO:1902531,GO:1902533,GO:1902680,GO:1903047,GO:1903432,GO:1903436,GO:1903438,GO:1903490,GO:1903506,GO:1903508,GO:1904263,GO:1990893,GO:2000112,GO:2000142,GO:2000144,GO:2001141
EggNOG free text desc.positive regulation of TORC1 signaling
EggNOG OGsKOG1332@1,KOG1332@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-12_007790.1
Exons2
Model size615
Cds size615
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.9757679-CDS-H-elongata_contig75661:1128..15011622931161.9757679-CDS-H-elongata_contig75661:1128..1501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75661 1129..1501 -
1691679723.6277804-CDS-H-elongata_contig75661:1128..15011691679723.6277804-CDS-H-elongata_contig75661:1128..1501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75661 1129..1501 -
1622931161.9971552-CDS-H-elongata_contig75661:1620..18621622931161.9971552-CDS-H-elongata_contig75661:1620..1862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75661 1621..1862 -
1691679723.6424396-CDS-H-elongata_contig75661:1620..18621691679723.6424396-CDS-H-elongata_contig75661:1620..1862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75661 1621..1862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75661.15250.1prot_H-elongata_contig75661.15250.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75661 1129..1862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75661.15250.1

>prot_H-elongata_contig75661.15250.1 ID=prot_H-elongata_contig75661.15250.1|Name=mRNA_H-elongata_contig75661.15250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
SIAWAPHELGLILACASSDGRVSILQHQPNDEWHATFIQDSKLGCNAVSW
APYNSLGSREGGAEYMRLVTGSCDNRVRIWRCAVGTTEWQEEGNVQDASP
RHSDWVRDVAWAPSTGMPCNIVASCSEDRSVIIWTQSQAAGPWSAAEMKT
FTAPVWRVSWSITGNVLAVSSGTSDVSLWKQNLAGTWECISTVAEHGPVP
SPQY*
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mRNA from alignment at H-elongata_contig75661:1129..1862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75661.15250.1 ID=mRNA_H-elongata_contig75661.15250.1|Name=mRNA_H-elongata_contig75661.15250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=734bp|location=Sequence derived from alignment at H-elongata_contig75661:1129..1862- (Himanthalia elongata Himel1 dioecious)
AGTATCGCTTGGGCTCCTCACGAGCTGGGCCTGATTCTCGCATGCGCATC TAGCGATGGTCGCGTCAGTATCTTGCAACACCAGCCGAACGATGAGTGGC ACGCGACTTTCATTCAAGACTCCAAGTTGGGCTGCAACGCCGTCAGCTGG GCCCCGTATAATAGCCTGGGATCTAGAGAAGGGGGGGCTGAGTACATGCG GCTCGTCACCGGTAGCTGCGACAATCGGGTCAGGATCTGGAGGTGAGACC CATCAAGTCACTTAATATTATAATCCCCGTTACAACAGAGTACATAATAC ATTGAGTTATAATTAATTACCCGCCACCAGATTTTCACGTTTCGCTTTTT TGCACTGTCAGATGCGCGGTAGGAACAACAGAGTGGCAAGAAGAAGGGAA CGTCCAAGACGCATCCCCGAGACACTCCGACTGGGTGCGAGACGTGGCAT GGGCGCCGTCGACCGGCATGCCCTGCAACATCGTCGCCAGCTGCTCTGAG GACAGGAGTGTCATCATCTGGACGCAGTCGCAAGCCGCGGGTCCCTGGTC CGCCGCTGAAATGAAAACATTTACTGCGCCGGTGTGGCGCGTTTCATGGT CCATAACAGGAAATGTCTTGGCGGTTTCTTCGGGTACGAGCGATGTCTCT CTATGGAAACAGAACTTGGCGGGAACATGGGAGTGTATTTCTACTGTAGC AGAGCACGGGCCTGTCCCGTCTCCGCAATATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig75661:1129..1862-

>mRNA_H-elongata_contig75661.15250.1 ID=mRNA_H-elongata_contig75661.15250.1|Name=mRNA_H-elongata_contig75661.15250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig75661:1129..1862- (Himanthalia elongata Himel1 dioecious)
AGTATCGCTTGGGCTCCTCACGAGCTGGGCCTGATTCTCGCATGCGCATC
TAGCGATGGTCGCGTCAGTATCTTGCAACACCAGCCGAACGATGAGTGGC
ACGCGACTTTCATTCAAGACTCCAAGTTGGGCTGCAACGCCGTCAGCTGG
GCCCCGTATAATAGCCTGGGATCTAGAGAAGGGGGGGCTGAGTACATGCG
GCTCGTCACCGGTAGCTGCGACAATCGGGTCAGGATCTGGAGAGTATCGC
TTGGGCTCCTCACGAGCTGGGCCTGATTCTCGCATGCGCATCTAGCGATG
GTCGCGTCAGTATCTTGCAACACCAGCCGAACGATGAGTGGCACGCGACT
TTCATTCAAGACTCCAAGTTGGGCTGCAACGCCGTCAGCTGGGCCCCGTA
TAATAGCCTGGGATCTAGAGAAGGGGGGGCTGAGTACATGCGGCTCGTCA
CCGGTAGCTGCGACAATCGGGTCAGGATCTGGAGATGCGCGGTAGGAACA
ACAGAGTGGCAAGAAGAAGGGAACGTCCAAGACGCATCCCCGAGACACTC
CGACTGGGTGCGAGACGTGGCATGGGCGCCGTCGACCGGCATGCCCTGCA
ACATCGTCGCCAGCTGCTCTGAGGACAGGAGTGTCATCATCTGGACGCAG
TCGCAAGCCGCGGGTCCCTGGTCCGCCGCTGAAATGAAAACATTTACTGC
GCCGGTGTGGCGCGTTTCATGGTCCATAACAGGAAATGTCTTGGCGGTTT
CTTCGGGTACGAGCGATGTCTCTCTATGGAAACAGAACTTGGCGGGAACA
TGGGAGTGTATTTCTACTGTAGCAGAGCACGGGCCTGTCCCGTCTCCGCA
ATATTAAATGCGCGGTAGGAACAACAGAGTGGCAAGAAGAAGGGAACGTC
CAAGACGCATCCCCGAGACACTCCGACTGGGTGCGAGACGTGGCATGGGC
GCCGTCGACCGGCATGCCCTGCAACATCGTCGCCAGCTGCTCTGAGGACA
GGAGTGTCATCATCTGGACGCAGTCGCAAGCCGCGGGTCCCTGGTCCGCC
GCTGAAATGAAAACATTTACTGCGCCGGTGTGGCGCGTTTCATGGTCCAT
AACAGGAAATGTCTTGGCGGTTTCTTCGGGTACGAGCGATGTCTCTCTAT
GGAAACAGAACTTGGCGGGAACATGGGAGTGTATTTCTACTGTAGCAGAG
CACGGGCCTGTCCCGTCTCCGCAATATTAA
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