prot_H-elongata_contig75161.15197.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig75161.15197.1
Unique Nameprot_H-elongata_contig75161.15197.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length105
Homology
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BLAST of mRNA_H-elongata_contig75161.15197.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.630e-15
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0 
Query:   31 GEQAKAAAAADGQKMPKLKALDGEAFASCLEMCFEHMLSVLARVSHIHAALASIVNSCKTA 91
            GEQ  AAAA  GQ + KLK LDGEAF SCLEMCFEHMLSVL RVS +H AL+SIV++C+++
Sbjct:  624 GEQGTAAAAG-GQSVAKLKTLDGEAFCSCLEMCFEHMLSVLTRVSQMHEALSSIVDACQSS 683
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BLAST of mRNA_H-elongata_contig75161.15197.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.560e-6
Identity = 40/77 (51.95%), Postives = 42/77 (54.55%), Query Frame = 0 
Query:    1 MDTFHLFSDETGGNSGGGAGDGERAGDDT----------SGEQAKAAAAADGQKMPKLKALDGEAFASCLEMCFEHM 67
            MDTFHLF DE+      GAG                    GEQ  AAAA  GQ + KLK LDGEAF SCLEMCFEHM
Sbjct:  498 MDTFHLFGDESAAT---GAGTXXXXXXXXXXXXXXXXXEDGEQGTAAAAG-GQSVAKLKTLDGEAFCSCLEMCFEHM 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75161.15197.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYH6_9PHAE4.630e-1568.85Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0A0_ECTSI1.560e-651.95Vacuolar protein sorting-associated protein 54 n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75161contigH-elongata_contig75161:202..1564 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75161.15197.1mRNA_H-elongata_contig75161.15197.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig75161 202..1564 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig75161.15197.1 ID=prot_H-elongata_contig75161.15197.1|Name=mRNA_H-elongata_contig75161.15197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MDTFHLFSDETGGNSGGGAGDGERAGDDTSGEQAKAAAAADGQKMPKLKA
LDGEAFASCLEMCFEHMLSVLARVSHIHAALASIVNSCKTAVDEGITENG
GGQEE
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