mRNA_H-elongata_contig75161.15197.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75161.15197.1
Unique NamemRNA_H-elongata_contig75161.15197.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75161.15197.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.630e-15
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   91 GEQAKAAAAADGQKMPKLKALDGEAFASCLEMCFEHMLSVLARVSHIHAALASIVNSCKTA 273
            GEQ  AAAA  GQ + KLK LDGEAF SCLEMCFEHMLSVL RVS +H AL+SIV++C+++
Sbjct:  624 GEQGTAAAAG-GQSVAKLKTLDGEAFCSCLEMCFEHMLSVLTRVSQMHEALSSIVDACQSS 683
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BLAST of mRNA_H-elongata_contig75161.15197.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.560e-6
Identity = 40/77 (51.95%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:    1 MDTFHLFSDETGGNSGGGAGDGERAGDDT----------SGEQAKAAAAADGQKMPKLKALDGEAFASCLEMCFEHM 201
            MDTFHLF DE+      GAG                    GEQ  AAAA  GQ + KLK LDGEAF SCLEMCFEHM
Sbjct:  498 MDTFHLFGDESAAT---GAGTXXXXXXXXXXXXXXXXXEDGEQGTAAAAG-GQSVAKLKTLDGEAFCSCLEMCFEHM 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75161.15197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYH6_9PHAE4.630e-1568.85Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0A0_ECTSI1.560e-651.95Vacuolar protein sorting-associated protein 54 n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75161contigH-elongata_contig75161:202..1564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.922744-CDS-H-elongata_contig75161:201..4021622931156.922744-CDS-H-elongata_contig75161:201..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75161 202..402 +
1691679721.6724913-CDS-H-elongata_contig75161:201..4021691679721.6724913-CDS-H-elongata_contig75161:201..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75161 202..402 +
1622931156.9444366-CDS-H-elongata_contig75161:1450..15641622931156.9444366-CDS-H-elongata_contig75161:1450..1564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75161 1451..1564 +
1691679721.6805289-CDS-H-elongata_contig75161:1450..15641691679721.6805289-CDS-H-elongata_contig75161:1450..1564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75161 1451..1564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75161.15197.1prot_H-elongata_contig75161.15197.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75161 202..1564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75161.15197.1

>prot_H-elongata_contig75161.15197.1 ID=prot_H-elongata_contig75161.15197.1|Name=mRNA_H-elongata_contig75161.15197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MDTFHLFSDETGGNSGGGAGDGERAGDDTSGEQAKAAAAADGQKMPKLKA
LDGEAFASCLEMCFEHMLSVLARVSHIHAALASIVNSCKTAVDEGITENG
GGQEE
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mRNA from alignment at H-elongata_contig75161:202..1564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75161.15197.1 ID=mRNA_H-elongata_contig75161.15197.1|Name=mRNA_H-elongata_contig75161.15197.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1363bp|location=Sequence derived from alignment at H-elongata_contig75161:202..1564+ (Himanthalia elongata Himel1 dioecious)
ATGGACACATTTCATCTCTTTAGCGACGAGACCGGAGGCAACAGCGGGGG
AGGTGCGGGGGACGGGGAGCGGGCGGGCGACGATACGAGCGGAGAACAGG
CAAAGGCCGCGGCAGCGGCTGATGGGCAGAAGATGCCGAAGCTGAAAGCG
CTGGATGGGGAGGCGTTTGCCTCGTGCTTGGAGATGTGCTTCGAGCACAT
GGTGCGTGAGAAGCAGATAGGGCAGTTCGGATCTTTCGTTAGTCGTTTTA
TGTATGTATGTGTATATGTATGTCTAAATTAATGGATGTCGGTATATGTA
TGTGTTTATGTATGAAATAGCGACTGAATGGACAAACTTATATATATGTG
TGTGTAAGCAGTCATGACATAGGGTAGTATAGTATAGTATAGTGTGGATC
AACCAGATATGGTTATCAACCCTTCTCGTGGCCCTGTCCCCGTTCGCGCC
TGATAATTTGGTCTCGCGAGAGTCCCCGTATTTATGTATGTGCATGAGTC
ATATTATGTATGTACATGAGTCATATTATTTGTGTGGATCATCTCGTAAT
GCCACGCCCCTCGATATCCGTCTTTGAGAGAGCCGCCGTGTCCCCGATAT
TTTTATTATTATACTTTTCACCTCTTGGAGTGAAATACAGCGCGCACGGG
ATGTACGGTAATCATTGACACGCATGTGGTTTGTCTTGTGTGTGATTCGT
GTCTGTATTTAATAATTTGTACATAGCCCTGCAATCCGGCCCTGTCGTGC
TAGACATTGTAGGCTACTCTATTAATAGCATTAATCCTTCCAATGGAGGA
TCAATAATATTTTCTCAAAAATTATCTGATCACGCGACTTCCATTCGCTG
CTCTGGAACAAAGGCCGGTCCTTTTGTCGAGGGATAATATTTTTTTTCTA
TGGCAAAATAATAATGCAAAAATATATATGTATCCCGGTCGTCGCCGCAT
GCGACCATCACCCTGCCCTCCCCTCCCCCCCGCCCCAAAAGGAAAATAAA
ACAAACCAACCCTGCACCTCTCACCGTGCTAAAAGGGCGTGGATGTTCGG
AGGGTTTGAATAAGTTCATATGTTTTAAAATGAAAAACACGCGATTTTAT
TGATTTAATGATTTTGTCACATTTTTTCCCACCAGCACAGAGCAAACAAG
CAAGCGACGGCCCTTCCTCCCTTTTTACGTGTCTATCCTGTCTGTTCTGT
GTGTTCGATCCTTTTCTATGCCGTGTCGTTCATGGACATTCGGAAAAAGC
TCTCCGTGCTGGCGCGGGTCTCGCACATTCACGCCGCTCTAGCATCGATC
GTAAACTCGTGCAAAACAGCCGTTGACGAGGGTATTACGGAGAACGGTGG
TGGGCAAGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig75161:202..1564+

>mRNA_H-elongata_contig75161.15197.1 ID=mRNA_H-elongata_contig75161.15197.1|Name=mRNA_H-elongata_contig75161.15197.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig75161:202..1564+ (Himanthalia elongata Himel1 dioecious)
ATGGACACATTTCATCTCTTTAGCGACGAGACCGGAGGCAACAGCGGGGG
AGGTGCGGGGGACGGGGAGCGGGCGGGCGACGATACGAGCGGAGAACAGG
CAAAGGCCGCGGCAGCGGCTGATGGGCAGAAGATGCCGAAGCTGAAAGCG
CTGGATGGGGAGGCGTTTGCCTCGTGCTTGGAGATGTGCTTCGAGCACAT
GATGGACACATTTCATCTCTTTAGCGACGAGACCGGAGGCAACAGCGGGG
GAGGTGCGGGGGACGGGGAGCGGGCGGGCGACGATACGAGCGGAGAACAG
GCAAAGGCCGCGGCAGCGGCTGATGGGCAGAAGATGCCGAAGCTGAAAGC
GCTGGATGGGGAGGCGTTTGCCTCGTGCTTGGAGATGTGCTTCGAGCACA
TGCTCTCCGTGCTGGCGCGGGTCTCGCACATTCACGCCGCTCTAGCATCG
ATCGTAAACTCGTGCAAAACAGCCGTTGACGAGGGTATTACGGAGAACGG
TGGTGGGCAAGAGGAGCTCTCCGTGCTGGCGCGGGTCTCGCACATTCACG
CCGCTCTAGCATCGATCGTAAACTCGTGCAAAACAGCCGTTGACGAGGGT
ATTACGGAGAACGGTGGTGGGCAAGAGGAG
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