mRNA_H-elongata_contig75122.15192.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75122.15192.1
Unique NamemRNA_H-elongata_contig75122.15192.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.420e-55
Identity = 93/102 (91.18%), Postives = 99/102 (97.06%), Query Frame = 1
Query:   10 LKVSRGHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            L+VSRGHICDLLSFCVRSHT+RMKYFVLRNNVVSRVLRLLSC +K LQLSA+RFLRSCVGIKD+FYNRYLVKNNLLAPVF LFRENRGRDNLINSA+IELVE
Sbjct:  518 LQVSRGHICDLLSFCVRSHTFRMKYFVLRNNVVSRVLRLLSCNDKYLQLSAVRFLRSCVGIKDEFYNRYLVKNNLLAPVFALFRENRGRDNLINSAVIELVE 619          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 5.300e-54
Identity = 93/102 (91.18%), Postives = 99/102 (97.06%), Query Frame = 1
Query:   10 LKVSRGHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            L+VSRGHICDLLSFCVRSHT+RMKYFVLRNNVVSRVLRLLSC +K LQLSA+RFLRSCVGIKD+FYNRYLVKNNLLAPVF LFRENRGRDNLINSA+IELVE
Sbjct:  590 LQVSRGHICDLLSFCVRSHTFRMKYFVLRNNVVSRVLRLLSCNDKYLQLSAVRFLRSCVGIKDEFYNRYLVKNNLLAPVFALFRENRGRDNLINSAVIELVE 691          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: A0A836CNG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG3_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.720e-46
Identity = 73/97 (75.26%), Postives = 87/97 (89.69%), Query Frame = 1
Query:   25 GHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
             H+CDLLS+CVRSHTYRMKYFVLRN++V+RVLRL  CR+K LQL+A+RFLR+CVGIKDDFYNRY+VKNNLLAPVF L  +N  +DNLI SAI+EL+E
Sbjct:   97 AHLCDLLSYCVRSHTYRMKYFVLRNHIVARVLRLARCRDKFLQLAAVRFLRACVGIKDDFYNRYIVKNNLLAPVFALLAQNAAKDNLITSAIMELLE 193          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: A0A7S3USX4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USX4_HETAK)

HSP 1 Score: 150 bits (380), Expect = 8.430e-44
Identity = 70/101 (69.31%), Postives = 88/101 (87.13%), Query Frame = 1
Query:   13 KVSRGHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            +++ GH  DLL+FCVR HTYRMKYFVLRNN+V+RVLRLL  R+K L+L+A+RF+R+CVGIKDDFYNRYLVKNNLLAPV  +F++ + +D LINS IIE+VE
Sbjct:   12 RLALGHATDLLAFCVRQHTYRMKYFVLRNNIVARVLRLLRYRDKFLKLAAVRFIRACVGIKDDFYNRYLVKNNLLAPVLDMFKDQKQQDTLINSTIIEMVE 112          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: A0A7S2RPQ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPQ1_9STRA)

HSP 1 Score: 151 bits (381), Expect = 5.600e-42
Identity = 68/101 (67.33%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   13 KVSRGHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            K S GHICD+LS+CV+SHTYRMKYFVLRNN+V R+L LL  R+K L+L+A+RF+R C+G KD+FYNRY+VK+NLLAPVF LF  N+GRDNL++SAII++++
Sbjct:   94 KSSFGHICDILSYCVKSHTYRMKYFVLRNNLVGRILELLHQRDKFLKLAALRFVRQCIGAKDEFYNRYIVKHNLLAPVFTLFAANQGRDNLVSSAIIDMID 194          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: A0A061R721_9CHLO (Protein phosphatase 4 regulatory subunit 3 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R721_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 5.190e-34
Identity = 62/97 (63.92%), Postives = 81/97 (83.51%), Query Frame = 1
Query:   25 GHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            G I +LL FCV++H+YR+KY++LRNNVV +VLRLL C +K L ++A+RFLR+C+G+KD+FYNRYLV+NNLL PV   F EN  R NL+NSAI+ELVE
Sbjct:  501 GTIVELLCFCVQNHSYRIKYYILRNNVVEKVLRLLKCSQKWLVVAAVRFLRTCIGVKDEFYNRYLVRNNLLEPVVKAFIENGSRYNLLNSAILELVE 597          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: A0A2R5GYY7_9STRA (Serine/threonine-protein phosphatase 4 regulatory subunit 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GYY7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 7.370e-34
Identity = 65/105 (61.90%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 AETLKVSRGHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            AET +V+  HI +LLSFCV++H +R+KYFVL  ++V +VLRLL  R+K L L AIRF R+CVG+KDDFYNR++VK NL AP+F +F  N  R+NLINSAIIEL+E
Sbjct:  715 AETARVAEHHITELLSFCVQTHGFRVKYFVLNQDIVDKVLRLLYSRDKHLVLGAIRFARTCVGLKDDFYNRHIVKLNLFAPIFEVFVSNGPRNNLINSAIIELLE 819          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: A0A1Y1INW4_KLENI (Suppressor of Mek n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INW4_KLENI)

HSP 1 Score: 133 bits (335), Expect = 7.400e-34
Identity = 65/105 (61.90%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 AETLKVSRGHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            AETL     HIC+LL+FCV+ H++R+KY+VLRNNVV +VLRL   REK L ++AIRFLR+C+G+KDDFY RYLVKNNL APV   F+ N  + N++NSA+IELV+
Sbjct:  541 AETL----NHICELLTFCVQHHSFRIKYYVLRNNVVEKVLRLTRRREKYLVVAAIRFLRTCIGLKDDFYARYLVKNNLFAPVMDAFKANGDKYNMLNSAVIELVD 641          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: A0A7S0HVM9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HVM9_9EUKA)

HSP 1 Score: 129 bits (323), Expect = 3.010e-32
Identity = 56/99 (56.57%), Postives = 79/99 (79.80%), Query Frame = 1
Query:   19 SRGHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            ++ H+C+LLSFCV+ H+YR+KYF+LRNNV+++VLRL   R+K L L+A+RF R+C+G+KD+FYNRY+VKN    PV      NR RDNL++S+I+EL E
Sbjct:  540 TQQHVCELLSFCVQKHSYRIKYFILRNNVLAKVLRLARSRDKCLVLAALRFFRTCIGLKDEFYNRYIVKNKCFEPVLAQLLRNRTRDNLVHSSILELFE 638          
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Match: R1FTL1_EMIHU (SMK-1 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FTL1_EMIHU)

HSP 1 Score: 128 bits (321), Expect = 3.040e-32
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 1
Query:   19 SRGHICDLLSFCVRSHTYRMKYFVLRNNVVSRVLRLLSCREKSLQLSAIRFLRSCVGIKDDFYNRYLVKNNLLAPVFGLFRENRGRDNLINSAIIELVE 315
            +R H+C+LL F V  HTYR+KYF+LRNNV+ RVLRL   R+K L L+AIRF R+C+G+KD+FYNRY+VKN    PV      N GRDNL++SAI+EL+E
Sbjct:  399 ARQHVCELLCFFVTRHTYRIKYFILRNNVLCRVLRLAKVRDKGLVLAAIRFFRTCIGLKDEFYNRYIVKNRCFEPVVAQLLANLGRDNLVHSAILELLE 497          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75122.15192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI53_ECTSI2.420e-5591.18SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKJ6_9PHAE5.300e-5491.18SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CNG3_9STRA1.720e-4675.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3USX4_HETAK8.430e-4469.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RPQ1_9STRA5.600e-4267.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A061R721_9CHLO5.190e-3463.92Protein phosphatase 4 regulatory subunit 3 n=2 Tax... [more]
A0A2R5GYY7_9STRA7.370e-3461.90Serine/threonine-protein phosphatase 4 regulatory ... [more]
A0A1Y1INW4_KLENI7.400e-3461.90Suppressor of Mek n=1 Tax=Klebsormidium nitens Tax... [more]
A0A7S0HVM9_9EUKA3.010e-3256.57Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
R1FTL1_EMIHU3.040e-3259.60SMK-1 domain-containing protein n=1 Tax=Emiliania ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75122contigH-elongata_contig75122:180..1795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size355
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75122.15192.1prot_H-elongata_contig75122.15192.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75122 180..1695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.4281793-CDS-H-elongata_contig75122:179..3221622931156.4281793-CDS-H-elongata_contig75122:179..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75122 180..322 -
1691679721.4713604-CDS-H-elongata_contig75122:179..3221691679721.4713604-CDS-H-elongata_contig75122:179..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75122 180..322 -
1622931156.4469612-CDS-H-elongata_contig75122:963..10701622931156.4469612-CDS-H-elongata_contig75122:963..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75122 964..1070 -
1691679721.4810178-CDS-H-elongata_contig75122:963..10701691679721.4810178-CDS-H-elongata_contig75122:963..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75122 964..1070 -
1622931156.4654238-CDS-H-elongata_contig75122:1690..16951622931156.4654238-CDS-H-elongata_contig75122:1690..1695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75122 1691..1695 -
1691679721.489543-CDS-H-elongata_contig75122:1690..16951691679721.489543-CDS-H-elongata_contig75122:1690..1695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75122 1691..1695 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.4865308-UTR-H-elongata_contig75122:1695..17951622931156.4865308-UTR-H-elongata_contig75122:1695..1795Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75122 1696..1795 -
1691679721.5046096-UTR-H-elongata_contig75122:1695..17951691679721.5046096-UTR-H-elongata_contig75122:1695..1795Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75122 1696..1795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75122.15192.1

>prot_H-elongata_contig75122.15192.1 ID=prot_H-elongata_contig75122.15192.1|Name=mRNA_H-elongata_contig75122.15192.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MWFRECYDYYPAGKSPFSSRQYASSAAVLASRTISITGTWLRTTSSRLFS
DCFGKIEGAITSSTLPSSSSSRCAFSACCALLLP*
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mRNA from alignment at H-elongata_contig75122:180..1795-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75122.15192.1 ID=mRNA_H-elongata_contig75122.15192.1|Name=mRNA_H-elongata_contig75122.15192.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1616bp|location=Sequence derived from alignment at H-elongata_contig75122:180..1795- (Himanthalia elongata Himel1 dioecious)
GCTGAAACGCTAAAGGTTTCACGAGGACACATCTGCGACCTGTTGTCGTT CTGCGTGAGGAGCCACACCTACCGAATGAAGTACTTCGTGCTCAGGAATA ATGTGGTGAGATGGTGTGAGAGGAAGGGGGATCTTTTGTGTTTTTGATAA AATGTTTGTGTGTGTGTCTGTGTCTGTTCCCGTGTCTGATGTGGCATGTG GCCTGTGAGTGTCTTGTCTGTGTGTGTTGTGTGTGTGAGAGAGTTTCAGT TGTATATTGGGAGCAAGAATAAACAACTGCGAAAGAGCTCAGTGAAGGAG AGCCAAGGTAGCATTTTGTTTCGTAATTCGGTTTGTACGTGTAGGTCTCT GCTTTGTTTGTGCATGGATGTGTTTGTGTGGGTGCGTGCTTGTGTTATCT ATGTCCTCGTCTTCGTGTCCTATTACAACGGCAGTTGATGGCGTTGCTTC ACACCCTTTAGTCTCGCCGCACCTCTCTGCACGTGTTCTAGGCATCTGTG TCGAGTCGAGATTTGTTGCGTCTCTATCTTGTTCTCACACCTGCGACATG TGCGAATGACGTCACCCTGACGTCACTTGTTCGCCCCACCATCGACGTCG TTTATTTTCCTTCTTCGCGCGATTAACGATTCATGATCGGATGGTATAAT CGTGATCAAATGTCATGGAACGGAACGCGGCTCGGGCCCCGGTGGGTGGG TGGGTCGGGCCGCTGTGCGCTCCAGGTTTCGCGAGTGCTACGACTACTAT CCTGCAGGGAAAAGTCCCTTCAGCTCTCGGCAATACGCTTCCTCCGCAGC TGTGTTGGCATCAAGGACGATTTCTATAACAGGTGTTCGAGAGAAAAATA TAGAGGGATGTTTTATTGTATCTACATTATTGAAGTGGTACTGACTTTTT TATTGCGTGTGAGTTGGAAAGGTGGACCGATATATATATATTTCTCTAAA GGTGTACCATCTAGATGCGAGGTTCAAGGTTTACTATATAAACATATTTG GTCTCTCGAAGAAGAAAATATCATGCTTATGTTGGTGGTTTTTTTTGTGA CGTTATCTCTCACGATGTAGAGCCGATGCGTGTGTGCCGCGCGGTTACGC TTCGCAGCGTTTGCCTTAGCCTTGACATTTGTGCGATTCTATATTTATAC GTCGTTTCTTTGTTTTTATCCGGTTGGTGTTGTTCTTGTGCCGGGTGCCG GGCTGGGAATGTGTCGGCCGGGGGGGGAAGCTAGTTAAGCGTCCCCAATT TGGGAAAAATGTAAAACTTCTTCCCCTCCCGAGTATCCAATCGCCGTATC CCCGGTGGTCTTAGTTCTTGAAATGGGATACAAATTCACCGTAGAGCAGG GAACGCTAAAGTTTTGTCCCCGGAAGGGAGAAAATTTTACCCATCCCCTC CACGAACGGGGGAAGCTTAAGATATCACCCCCCCCAACCCACTCTGCTGA TTGATTCTTCCCTTTCTTCATAGGTACCTGGTTAAGAACAACCTCCTCGC GCCTGTTTTCGGACTGTTTCGGGAAAATCGAGGGCGCGATAACCTCATCA ACTCTGCCATCATCGAGCTCGTCGAGGTGCGCCTTCTCTGCGTGCTGCGC CTTATTATTACCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig75122:180..1795-

>mRNA_H-elongata_contig75122.15192.1 ID=mRNA_H-elongata_contig75122.15192.1|Name=mRNA_H-elongata_contig75122.15192.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig75122:180..1795- (Himanthalia elongata Himel1 dioecious)
ATGTGATGTGGTTTCGCGAGTGCTACGACTACTATCCTGCAGGGAAAAGT
CCCTTCAGCTCTCGGCAATACGCTTCCTCCGCAGCTGTGTTGGCATCAAG
GACGATTTCTATAACAGGTTTCGCGAGTGCTACGACTACTATCCTGCAGG
GAAAAGTCCCTTCAGCTCTCGGCAATACGCTTCCTCCGCAGCTGTGTTGG
CATCAAGGACGATTTCTATAACAGGTACCTGGTTAAGAACAACCTCCTCG
CGCCTGTTTTCGGACTGTTTCGGGAAAATCGAGGGCGCGATAACCTCATC
AACTCTGCCATCATCGAGCTCGTCGAGGTGCGCCTTCTCTGCGTGCTGCG
CCTTATTATTACCATAAGTACCTGGTTAAGAACAACCTCCTCGCGCCTGT
TTTCGGACTGTTTCGGGAAAATCGAGGGCGCGATAACCTCATCAACTCTG
CCATCATCGAGCTCGTCGAGGTGCGCCTTCTCTGCGTGCTGCGCCTTATT
ATTACCATAA
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