mRNA_H-elongata_contig74807.15160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74807.15160.1
Unique NamemRNA_H-elongata_contig74807.15160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: A0A261GRE7_9GAMM (GMP synthase n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GRE7_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 7.560e-9
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    4 KASAWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLV 141
            K S +++EPW+   LD  R L  SGRPV+G+C GHQ++AKALGG V
Sbjct:   73 KWSVYDDEPWIHRALDLARTLHHSGRPVVGICFGHQLLAKALGGEV 118          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: A0A0P1IGC9_9RHOB (GMP synthase [glutamine-hydrolyzing] n=10 Tax=Ruegeria TaxID=97050 RepID=A0A0P1IGC9_9RHOB)

HSP 1 Score: 57.4 bits (137), Expect = 1.670e-8
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   13 AWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLV 141
            A+E  PW+  L D  R +R+SGRP++GVC GHQI+A+ALGG V
Sbjct:   66 AYEGHPWIPPLEDLIRAIRQSGRPLIGVCFGHQIIAQALGGKV 108          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: X7EH95_9RHOB (Glutamine amidotransferase n=1 Tax=Roseivivax halodurans JCM 10272 TaxID=1449350 RepID=X7EH95_9RHOB)

HSP 1 Score: 57.4 bits (137), Expect = 1.680e-8
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    4 KASAWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLV 141
            K  A+E+ PW+  L +  R +R+SGRP++GVC GHQI+A+ALGG V
Sbjct:   63 KHGAYEDHPWIPPLEELVRDIRDSGRPLIGVCFGHQIIAQALGGRV 108          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: UPI00166B37DC (type 1 glutamine amidotransferase n=1 Tax=Primorskyibacter flagellatus TaxID=1387277 RepID=UPI00166B37DC)

HSP 1 Score: 57.0 bits (136), Expect = 2.300e-8
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    4 KASAWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLV 141
            K  A+E+ PW+  L D  R +R+SGRP++G+C GHQI+A+ALGG V
Sbjct:   63 KFGAYEDLPWIPPLEDLIRAIRDSGRPLVGICFGHQIIAQALGGKV 108          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: UPI00147C9FCB (type 1 glutamine amidotransferase n=2 Tax=Ruegeria atlantica TaxID=81569 RepID=UPI00147C9FCB)

HSP 1 Score: 57.0 bits (136), Expect = 2.320e-8
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   13 AWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLVCARNG 156
            A+E+ PW+  L D  R +++SGRP++GVC GHQI+A+ALGG V   NG
Sbjct:   66 AYEDHPWIPPLEDLIRTIQKSGRPLIGVCFGHQIIAQALGGKVEKFNG 113          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: UPI001FB5383E (type 1 glutamine amidotransferase n=1 Tax=Shimia aestuarii TaxID=254406 RepID=UPI001FB5383E)

HSP 1 Score: 57.0 bits (136), Expect = 2.340e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    4 KASAWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLV 141
            K  A+E+ PW+  L D  R + ESGRP++GVC GHQI+A+ALGG V
Sbjct:   63 KHGAYEDHPWIPPLEDLIREIAESGRPLIGVCFGHQIIAQALGGKV 108          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: UPI001E3E5FE0 (type 1 glutamine amidotransferase n=1 Tax=Seohaeicola saemankumensis TaxID=481181 RepID=UPI001E3E5FE0)

HSP 1 Score: 56.6 bits (135), Expect = 3.250e-8
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    4 KASAWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLV 141
            K  A+E+ PW+  L D  R +R++G+P++GVC GHQI+A+ALGG V
Sbjct:   63 KHGAYEDHPWIPPLEDLIRAIRDAGKPLIGVCFGHQIIAQALGGKV 108          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: A0A1H0JBU7_9RHOB (GMP synthase (Glutamine-hydrolysing) n=1 Tax=Lutimaribacter pacificus TaxID=391948 RepID=A0A1H0JBU7_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 4.680e-8
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    4 KASAWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLV 141
            K  A+E+ PW+  L    R +R+SGRP++GVC GHQI+A+ALGG V
Sbjct:   63 KHGAYEDHPWIPPLESLIRAIRDSGRPLVGVCFGHQIIAQALGGRV 108          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: W8RNU1_9RHOB (GMP synthase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=W8RNU1_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 4.980e-8
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   13 AWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLVCARNG 156
            A+E+ PW+  L D  R + E+GRP++G+C GHQI+A+ALGG V   +G
Sbjct:   66 AYEDHPWIAPLEDLIRAIHEAGRPLVGICFGHQIIAQALGGRVEKYSG 113          
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Match: UPI000525F758 (gamma-glutamyl-gamma-aminobutyrate hydrolase family protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI000525F758)

HSP 1 Score: 56.2 bits (134), Expect = 5.330e-8
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    4 KASAWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGG-LVCARNG 156
            K S +++E W+   LD  R L ESG+PV+G+C GHQ++ KALGG +V ++NG
Sbjct:   73 KWSVYDDEAWIHRALDLARTLHESGQPVVGICFGHQLLTKALGGEVVKSKNG 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74807.15160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A261GRE7_9GAMM7.560e-956.52GMP synthase n=1 Tax=Hahella sp. CCB-MM4 TaxID=192... [more]
A0A0P1IGC9_9RHOB1.670e-858.14GMP synthase [glutamine-hydrolyzing] n=10 Tax=Rueg... [more]
X7EH95_9RHOB1.680e-854.35Glutamine amidotransferase n=1 Tax=Roseivivax halo... [more]
UPI00166B37DC2.300e-854.35type 1 glutamine amidotransferase n=1 Tax=Primorsk... [more]
UPI00147C9FCB2.320e-854.17type 1 glutamine amidotransferase n=2 Tax=Ruegeria... [more]
UPI001FB5383E2.340e-856.52type 1 glutamine amidotransferase n=1 Tax=Shimia a... [more]
UPI001E3E5FE03.250e-852.17type 1 glutamine amidotransferase n=1 Tax=Seohaeic... [more]
A0A1H0JBU7_9RHOB4.680e-854.35GMP synthase (Glutamine-hydrolysing) n=1 Tax=Lutim... [more]
W8RNU1_9RHOB4.980e-850.00GMP synthase n=2 Tax=Alphaproteobacteria TaxID=282... [more]
UPI000525F7585.330e-850.00gamma-glutamyl-gamma-aminobutyrate hydrolase famil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74807contigH-elongata_contig74807:1751..2098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size158
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.739689-CDS-H-elongata_contig74807:1752..18281622931152.739689-CDS-H-elongata_contig74807:1752..1828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 1753..1828 -
1691679719.9017594-CDS-H-elongata_contig74807:1752..18281691679719.9017594-CDS-H-elongata_contig74807:1752..1828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 1753..1828 -
1622931152.768757-CDS-H-elongata_contig74807:2018..20981622931152.768757-CDS-H-elongata_contig74807:2018..2098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 2019..2098 -
1691679719.9119887-CDS-H-elongata_contig74807:2018..20981691679719.9119887-CDS-H-elongata_contig74807:2018..2098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 2019..2098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74807.15160.1prot_H-elongata_contig74807.15160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74807 1753..2098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74807.15160.1

>prot_H-elongata_contig74807.15160.1 ID=prot_H-elongata_contig74807.15160.1|Name=mRNA_H-elongata_contig74807.15160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
GKASAWENEPWMVTLLDETRGLRESGRPVLGVCLGHQIMAKALGGLVCAR
NG
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mRNA from alignment at H-elongata_contig74807:1751..2098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74807.15160.1 ID=mRNA_H-elongata_contig74807.15160.1|Name=mRNA_H-elongata_contig74807.15160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig74807:1751..2098- (Himanthalia elongata Himel1 dioecious)
GGCAAGGCGAGCGCTTGGGAAAACGAGCCTTGGATGGTAACGCTGCTCGA CGAAACAAGGGGGTTACGAGAATCAGGAAGGCGAGACAGCGAAATAAGTC TCACAAGCGATTTGAACAACTTACGCTTCAGGAAAACGGGGAAGACGGGG TATTCCTTTGCGTGGTGGGAACTTTAGAGCTTCGTATACCATCACTCAAA CTATATATGGCCCCCCATCCCCCTTCTCTATTCACCTCCATCAGCCCTCG ACTGTCCTATATCCCGACAGACCTGTATTAGGAGTTTGCCTAGGTCACCA GATAATGGCCAAGGCACTGGGCGGGCTTGTTTGCGCTCGAAATGGACC
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Coding sequence (CDS) from alignment at H-elongata_contig74807:1751..2098-

>mRNA_H-elongata_contig74807.15160.1 ID=mRNA_H-elongata_contig74807.15160.1|Name=mRNA_H-elongata_contig74807.15160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig74807:1751..2098- (Himanthalia elongata Himel1 dioecious)
GGCAAGGCGAGCGCTTGGGAAAACGAGCCTTGGATGGTAACGCTGCTCGA
CGAAACAAGGGGGTTACGAGAATCAGGAAGGGCAAGGCGAGCGCTTGGGA
AAACGAGCCTTGGATGGTAACGCTGCTCGACGAAACAAGGGGGTTACGAG
AATCAGGAAGACCTGTATTAGGAGTTTGCCTAGGTCACCAGATAATGGCC
AAGGCACTGGGCGGGCTTGTTTGCGCTCGAAATGGAACCTGTATTAGGAG
TTTGCCTAGGTCACCAGATAATGGCCAAGGCACTGGGCGGGCTTGTTTGC
GCTCGAAATGGA
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