mRNA_H-elongata_contig119623.1514.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE) HSP 1 Score: 261 bits (667), Expect = 1.770e-78 Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTS 369
RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRD TAG+QGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKY+LKLDNPKGFYHELHRPSHFLNFTS
Sbjct: 2310 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDATAGAQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYALKLDNPKGFYHELHRPSHFLNFTS 2431
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: A0A7S3Y066_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y066_HETAK) HSP 1 Score: 221 bits (563), Expect = 1.770e-64 Identity = 101/121 (83.47%), Postives = 108/121 (89.26%), Query Frame = 1
Query: 7 IMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTS 369
IMADNK+WDGEKTIV+TCSFTPGSCSLTAYKLTPQGFEWGKA+R A QGYAPTHYEKVQMLLSDRFLGFFMVPEDD WNYNF GV+HS MKYSLKL NPK +YHE HRP+HFLNF +
Sbjct: 1794 IMADNKSWDGEKTIVVTCSFTPGSCSLTAYKLTPQGFEWGKANRGQGANPQGYAPTHYEKVQMLLSDRFLGFFMVPEDDVWNYNFNGVNHSQTMKYSLKLANPKEYYHEKHRPAHFLNFAA 1914
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: A0A7J7JH58_BUGNE (PRPF8 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JH58_BUGNE) HSP 1 Score: 201 bits (512), Expect = 5.350e-64 Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTS 369
+IM+DN +WDGEKT+VITCSFTPGSCSLTAYKLTP GFEWG+ + D +GY P+HYE+VQMLLSDRFLG+FMVP WNYNFMGV H MKY L L NPK FYHE+HRPSHF+NFTS
Sbjct: 52 KIMSDNPSWDGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPIQGSWNYNFMGVRHEANMKYELMLSNPKDFYHEVHRPSHFMNFTS 173
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA) HSP 1 Score: 218 bits (556), Expect = 1.560e-63 Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTS 369
RI ADNK+WD EKT+VITCSFTPGSCSLTAYKLT QG EWGKA+RD +QGY+P HYEKVQMLLSDRF+GFFMVP+D+RWNYNFMGVSHS GMKY LKL NPK FY E+HRPSHFLNFT+
Sbjct: 2244 RITADNKSWDPEKTVVITCSFTPGSCSLTAYKLTQQGLEWGKANRDGAGAAQGYSPVHYEKVQMLLSDRFMGFFMVPDDERWNYNFMGVSHSAGMKYRLKLANPKEFYAEVHRPSHFLNFTA 2365
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: A0A7S2SUH9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUH9_9STRA) HSP 1 Score: 199 bits (505), Expect = 3.050e-63 Identity = 90/123 (73.17%), Postives = 103/123 (83.74%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGS-QGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTS 369
RI++DNK+WDGEK I+ITCSFTPGSCSLTAYKLTP GFEWG+ +R+ + QGY YEKVQMLLSDRFLGFFMVP D WNYNFMGV H+VGMKY LKL+NP+ FYHE HRPSHF+NF +
Sbjct: 28 RILSDNKSWDGEKCIMITCSFTPGSCSLTAYKLTPSGFEWGQKNRESLGQNPQGYGSGMYEKVQMLLSDRFLGFFMVPGDGIWNYNFMGVKHAVGMKYDLKLENPREFYHEFHRPSHFMNFAT 150
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: UPI00092EC984 (pre-mRNA-processing-splicing factor 8-like n=1 Tax=Gavialis gangeticus TaxID=94835 RepID=UPI00092EC984) HSP 1 Score: 198 bits (504), Expect = 7.750e-63 Identity = 86/121 (71.07%), Postives = 99/121 (81.82%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFT 366
++MADN +WDGEKTI+ITCSFTPGSC+LTAYKLTP G+EWG+ + D +GY P+HYE+VQMLLSDRFLGFFMVP WNYNFMGV H MKY L+L NPK FYHE+HRPSHFLNF
Sbjct: 48 KVMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFA 168
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: A0A6G5AAP3_RHIMP (Putative pre-mrna splicing factor n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5AAP3_RHIMP) HSP 1 Score: 202 bits (515), Expect = 1.270e-62 Identity = 89/122 (72.95%), Postives = 101/122 (82.79%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTS 369
RIMADN +WDGEKT++ITCSFTPGSCSLTAYKLTP G+EWG+ + D +GY P+HYE+VQMLLSDRFLGFFMVP WNYNFMGV H MKY L+L NPK FYHE+HRPSHFLNF+S
Sbjct: 185 RIMADNPSWDGEKTVIITCSFTPGSCSLTAYKLTPSGYEWGRQNTDRGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWNYNFMGVRHDPSMKYELQLANPKEFYHEIHRPSHFLNFSS 306
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: A0A1B6G3I4_9HEMI (MPN domain-containing protein (Fragment) n=2 Tax=Neoptera TaxID=33340 RepID=A0A1B6G3I4_9HEMI) HSP 1 Score: 202 bits (514), Expect = 1.280e-62 Identity = 88/122 (72.13%), Postives = 101/122 (82.79%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTS 369
++MA+N +WDGEKT+VITCSFTPGSCSLTAYKLTP GFEWG+ + D +GY P+HYEKVQMLLSDRFLGFFMVP WNYNFMGV H MKY L+L NPK FYHE+HRP+HFLNF+S
Sbjct: 179 KVMAENPSWDGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYEKVQMLLSDRFLGFFMVPSQGSWNYNFMGVRHDPNMKYELQLSNPKEFYHEVHRPAHFLNFSS 300
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: A0A2D4IAF6_MICLE (MPN domain-containing protein (Fragment) n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A2D4IAF6_MICLE) HSP 1 Score: 199 bits (505), Expect = 1.830e-62 Identity = 86/121 (71.07%), Postives = 99/121 (81.82%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFT 366
++MADN +WDGEKTI+ITCSFTPGSC+LTAYKLTP G+EWG+ + D +GY P+HYE+VQMLLSDRFLGFFMVP WNYNFMGV H MKY L+L NPK FYHE+HRPSHFLNF
Sbjct: 87 KVMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFA 207
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Match: E4Z4Z2_OIKDI (MPN domain-containing protein (Fragment) n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4Z4Z2_OIKDI) HSP 1 Score: 201 bits (511), Expect = 3.860e-62 Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 1
Query: 4 RIMADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTS 369
++MADN WDGEKTIVITCSFTPGSCSLTAYKLTP G+EWG+ + D + +GY P+HYEKVQMLLSD+FLGFFMVP WNYNF+G H V MKY L+L NPK FYHE+HRP HFLNFTS
Sbjct: 179 KVMADNPEWDGEKTIVITCSFTPGSCSLTAYKLTPGGYEWGRQNNDKGSNPKGYLPSHYEKVQMLLSDKFLGFFMVPSAGSWNYNFIGARHDVNMKYELQLANPKEFYHEIHRPQHFLNFTS 300 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119623.1514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119623.1514.1 >prot_H-elongata_contig119623.1514.1 ID=prot_H-elongata_contig119623.1514.1|Name=mRNA_H-elongata_contig119623.1514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MADNKTWDGEKTIVITCSFTPGSCSLTAYKLTPQGFEWGKAHRDPTAGSQback to top mRNA from alignment at H-elongata_contig119623:449..1593+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119623.1514.1 ID=mRNA_H-elongata_contig119623.1514.1|Name=mRNA_H-elongata_contig119623.1514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-elongata_contig119623:449..1593+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119623:449..1593+ >mRNA_H-elongata_contig119623.1514.1 ID=mRNA_H-elongata_contig119623.1514.1|Name=mRNA_H-elongata_contig119623.1514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig119623:449..1593+ (Himanthalia elongata Himel1 dioecious)back to top |