mRNA_H-elongata_contig74482.15133.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74482.15133.1
Unique NamemRNA_H-elongata_contig74482.15133.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A0A9XJD8_LYGHE (Copia protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XJD8_LYGHE)

HSP 1 Score: 62.4 bits (150), Expect = 1.690e-9
Identity = 41/122 (33.61%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   88 LTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRR 453
            L N A+S     Q    LS  +AEY+A+      A A+K +L  V        A+++Y DN+GA ALT NP     +KH+D+    +R  V  G + +  V +     DIL KPL  +  R+
Sbjct:    5 LGNAAISWESRKQRTVALSSCEAEYMALAEASKEATALKRILREVTG---VNGAVNLYNDNQGAIALTENPVHHRRTKHIDIRYHFVRETVERGDVSIKYVPTEHMVADILTKPLPRQQVRK 123          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: UPI0014487C49 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014487C49)

HSP 1 Score: 61.6 bits (148), Expect = 1.120e-8
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   58 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRH 456
            R+S SG   +L++ A+S S   Q   +LSM +AEYVA+       + +K  L+ +         + +Y DNE   + T +P+     KH+D+  +  R +VR   + V  V +     D L +PL  +AF RH
Sbjct:   70 RKSTSGYVFLLSDGAISWSSKKQSSVSLSMMEAEYVALASAAQEVVWLKKFLEHLLDIAENIEPVLVYYDNEATISSTKDPKFHCKIKHIDIKYNSARDMVRREVVNVKYVSTKDMLADSLTEPLSRDAFVRH 202          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A5A7V287_CUCME (Integrase, catalytic core n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V287_CUCME)

HSP 1 Score: 62.8 bits (151), Expect = 1.260e-8
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   58 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
            R++ SG   ML+  A+S S   Q  FTLS ++AE++A T     A+ +K +L+ +Q +     +I +Y DN     L+ NP     SKH+DV    LR L + G I V    S  Q  +I+ KPL    F++ R
Sbjct:  186 RKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQE--GSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFR 317          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A5A7UQ30_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UQ30_CUCME)

HSP 1 Score: 60.8 bits (146), Expect = 5.720e-8
Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   58 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
            R+S S    M+++  +S     Q  FTLS ++AE+VA T     A+ +K +L+ +  +     A  +Y DN  A  L+ NP     SKH+DV    LR L R G I ++   S  Q  DI+ KPL   AF++ R
Sbjct:  247 RKSTSRYVFMMSSAKISWCSKNQPIFTLSTTEAEFVAATVCTCQAIWLKKILEELYFKQE--GATKVYCDNSSAIKLSKNPVLHKRSKHIDVKFHFLRDLTRDGVIELYYCKSEDQIADIMTKPLKLPAFQKLR 378          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A4U0W4R2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W4R2_9BASI)

HSP 1 Score: 60.5 bits (145), Expect = 9.400e-8
Identity = 46/153 (30.07%), Postives = 76/153 (49.67%), Query Frame = 1
Query:    4 PKLWFLAEMDNANNRC-NYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
            P   F A  D+    C +  RS  G   +L + AVS S   Q   T S ++AEY+ ++H    A+ +  +L  +  R      I+++ DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D++ K +   AF +HR
Sbjct:  942 PLAGFEAYSDSDWGACPSTSRSTMGYTFVLASGAVSWSSKLQPRVTASSTEAEYLGLSHASKEAIHLSQLLSELAQRSG--RPIELFCDNQGANALSRDPQFHNRTRHLRLTEHFVREQVQQGDITVTYIPTARMVADVMTKSIPLPAFIQHR 1092          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A507DAW5_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507DAW5_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 3.180e-7
Identity = 41/144 (28.47%), Postives = 72/144 (50.00%), Query Frame = 1
Query:   31 DNANNRCNYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLD-FVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
            D A N  +  +S  G  A+L + A+S   T      LS ++AEY++   +  +   I++ ++ +    +     + ++EDN        N   S+ SKH++V    +R LV   Q+ +  + +A Q  D+L KPLG +AF +HR
Sbjct:  819 DAAYNIHSGAKSQLGYLALLADGAISWKSTKTPIVPLSSTEAEYMS---ISELGREIQSFINLYTALDIPVTMPLTLFEDNMSTIHQCNNDVFSHRSKHINVRYHYIRELVNTKQVTITYIKTADQPADLLTKPLGRDAFSKHR 959          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KRA9_RHOTO (Copia-type polyprotein (Fragment) n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KRA9_RHOTO)

HSP 1 Score: 58.2 bits (139), Expect = 6.260e-7
Identity = 47/153 (30.72%), Postives = 71/153 (46.41%), Query Frame = 1
Query:    4 PKLWFLAEMDNANNRC-NYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
            P   F A  D+    C    RS  G   +L N AVS S   Q   T S+++AEY+ ++H     + +  +L   +       A  +Y DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D + K L    F RHR
Sbjct: 2682 PLRGFEAYSDSDWGACPTTSRSTMGYVFLLANGAVSWSSKLQPRVTASLTEAEYLGLSHACKETVYLTQLLG--ELGFPAEGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 2832          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KQR7_RHOTO (Gag-Pol polyprotein n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KQR7_RHOTO)

HSP 1 Score: 57.8 bits (138), Expect = 7.290e-7
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 1
Query:   61 RSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
            RS  G   +L N AVS S   Q   T S+++AEY+ ++H     + +  +L   +       A  +Y DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D + K L    F RHR
Sbjct:  371 RSTMGYVFLLANGAVSWSSKLQPRVTASLTEAEYLGLSHACKETVYLTQLLG--ELGFPAEGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 501          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A4U0W146_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W146_9BASI)

HSP 1 Score: 57.8 bits (138), Expect = 8.180e-7
Identity = 45/153 (29.41%), Postives = 74/153 (48.37%), Query Frame = 1
Query:    4 PKLWFLAEMDNANNRC-NYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
            P   F A  D+    C +  RS  G   +L + AVS S   Q   T S ++AEY+ ++H    A+ +  +L  +         I+++ DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D++ K L    F +HR
Sbjct: 1112 PLAGFEAYSDSDWGACPSTSRSTMGYTFVLASGAVSWSSKLQPRVTASSTEAEYLGLSHASKEAIHLSQLLSELAQGSG--RPIELFGDNQGANALSRDPQFHNRTRHLRLTEHFVREQVQQGDITVTYIPTARMVADVMTKSLPLPGFIQHR 1262          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KB67_RHOTO (Gag-Pol polyprotein n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KB67_RHOTO)

HSP 1 Score: 57.4 bits (137), Expect = 1.070e-6
Identity = 47/153 (30.72%), Postives = 70/153 (45.75%), Query Frame = 1
Query:    4 PKLWFLAEMDNANNRC-NYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
            P   F A  D+    C    RS  G   +L N AVS S   Q   T S ++AEY+ ++H     + +  +L   +       A  +Y DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D + K L    F RHR
Sbjct:  687 PLRGFEAYSDSDWGACPTTSRSTMGYVFLLANGAVSWSSKLQPRVTASSTEAEYLGLSHACKETVYLTQLLG--ELGFPAKGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 837          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A0A9XJD8_LYGHE1.690e-933.61Copia protein (Fragment) n=1 Tax=Lygus hesperus Ta... [more]
UPI0014487C491.120e-830.83secreted RxLR effector protein 161-like n=1 Tax=Ni... [more]
A0A5A7V287_CUCME1.260e-835.07Integrase, catalytic core n=2 Tax=Cucumis melo var... [more]
A0A5A7UQ30_CUCME5.720e-835.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A4U0W4R2_9BASI9.400e-830.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A507DAW5_9FUNG3.180e-728.47DNA-directed DNA polymerase n=1 Tax=Chytriomyces c... [more]
A0A511KRA9_RHOTO6.260e-730.72Copia-type polyprotein (Fragment) n=1 Tax=Rhodospo... [more]
A0A511KQR7_RHOTO7.290e-731.58Gag-Pol polyprotein n=2 Tax=Rhodosporidium toruloi... [more]
A0A4U0W146_9BASI8.180e-729.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A511KB67_RHOTO1.070e-630.72Gag-Pol polyprotein n=1 Tax=Rhodosporidium toruloi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74482contigH-elongata_contig74482:7..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.8e-09
Seed eggNOG ortholog67593.Physo144685
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.1019897-CDS-H-elongata_contig74482:6..4381622931149.1019897-CDS-H-elongata_contig74482:6..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74482 7..438 -
1691679718.5869405-CDS-H-elongata_contig74482:6..4381691679718.5869405-CDS-H-elongata_contig74482:6..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74482 7..438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.118676-UTR-H-elongata_contig74482:438..4651622931149.118676-UTR-H-elongata_contig74482:438..465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74482 439..465 -
1691679718.598481-UTR-H-elongata_contig74482:438..4651691679718.598481-UTR-H-elongata_contig74482:438..465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74482 439..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74482.15133.1prot_H-elongata_contig74482.15133.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74482 7..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74482.15133.1

>prot_H-elongata_contig74482.15133.1 ID=prot_H-elongata_contig74482.15133.1|Name=mRNA_H-elongata_contig74482.15133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MDNANNRCNYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTH
VENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHL
DVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR
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mRNA from alignment at H-elongata_contig74482:7..465-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74482.15133.1 ID=mRNA_H-elongata_contig74482.15133.1|Name=mRNA_H-elongata_contig74482.15133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig74482:7..465- (Himanthalia elongata Himel1 dioecious)
GACCCTAAGCTGTGGTTTCTCGCTGAAATGGATAACGCCAATAATAGGTG TAACTACAGACGGTCGGTTTCGGGTGTTGCGGCCATGCTCACAAATAAAG CTGTGAGTGCAAGTATCACAACGCAGCATTTTTTTACACTATCTATGAGT GACGCGGAGTATGTTGCAATGACTCATGTAGAAAATATTGCTTTAGCGAT AAAAGCGGTGTTGGATTTTGTTCAGCCACGTCTCACTTGTTGTAGTGCTA TTGATATGTACGAGGATAACGAGGGGGCAAAGGCGTTGACTGGCAATCCC CAGGGTTCTTACCTCAGCAAACACCTTGACGTGTGCTTGGATTGCCTGCG GAGGCTTGTGAGATTAGGACAGATAATAGTTCACAGCGTAGACTCGGCGG GACAAAATACGGATATCCTTCCGAAGCCACTAGGGCACGAGGCGTTCCGG CGGCACCGT
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Coding sequence (CDS) from alignment at H-elongata_contig74482:7..465-

>mRNA_H-elongata_contig74482.15133.1 ID=mRNA_H-elongata_contig74482.15133.1|Name=mRNA_H-elongata_contig74482.15133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig74482:7..465- (Himanthalia elongata Himel1 dioecious)
ATGGATAACGCCAATAATAGGTGTAACTACAGACGGTCGGTTTCGGGTGT
TGCGGCCATGCTCACAAATAAAGCTGTGAGTGCAAGTATCACAACGCAGC
ATTTTTTTACACTATCTATGAGTGACGCGGAGTATGTTGCAATGACTCAT
GTAGAAAATATTGCTTTAGCGATAAAAGCGGTGTTGGATTTTGTTCAGCC
ACGTCTCACTTGTTGTAGTGCTATTGATATGTACGAGGATAACGAGGGGG
CAAAGGCGTTGACTGGCAATCCCCAGGGTTCTTACCTCAGCAAACACCTT
GACGTGTGCTTGGATTGCCTGCGGAGGCTTGTGAGATTAGGACAGATAAT
AGTTCACAGCGTAGACTCGGCGGGACAAAATACGGATATCCTTCCGAAGC
CACTAGGGCACGAGGCGTTCCGGCGGCACCGTATGGATAACGCCAATAAT
AGGTGTAACTACAGACGGTCGGTTTCGGGTGTTGCGGCCATGCTCACAAA
TAAAGCTGTGAGTGCAAGTATCACAACGCAGCATTTTTTTACACTATCTA
TGAGTGACGCGGAGTATGTTGCAATGACTCATGTAGAAAATATTGCTTTA
GCGATAAAAGCGGTGTTGGATTTTGTTCAGCCACGTCTCACTTGTTGTAG
TGCTATTGATATGTACGAGGATAACGAGGGGGCAAAGGCGTTGACTGGCA
ATCCCCAGGGTTCTTACCTCAGCAAACACCTTGACGTGTGCTTGGATTGC
CTGCGGAGGCTTGTGAGATTAGGACAGATAATAGTTCACAGCGTAGACTC
GGCGGGACAAAATACGGATATCCTTCCGAAGCCACTAGGGCACGAGGCGT
TCCGGCGGCACCGT
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