mRNA_H-elongata_contig74482.15133.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A0A9XJD8_LYGHE (Copia protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XJD8_LYGHE) HSP 1 Score: 62.4 bits (150), Expect = 1.690e-9 Identity = 41/122 (33.61%), Postives = 60/122 (49.18%), Query Frame = 1
Query: 88 LTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRR 453
L N A+S Q LS +AEY+A+ A A+K +L V A+++Y DN+GA ALT NP +KH+D+ +R V G + + V + DIL KPL + R+
Sbjct: 5 LGNAAISWESRKQRTVALSSCEAEYMALAEASKEATALKRILREVTG---VNGAVNLYNDNQGAIALTENPVHHRRTKHIDIRYHFVRETVERGDVSIKYVPTEHMVADILTKPLPRQQVRK 123
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: UPI0014487C49 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014487C49) HSP 1 Score: 61.6 bits (148), Expect = 1.120e-8 Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query: 58 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRH 456
R+S SG +L++ A+S S Q +LSM +AEYVA+ + +K L+ + + +Y DNE + T +P+ KH+D+ + R +VR + V V + D L +PL +AF RH
Sbjct: 70 RKSTSGYVFLLSDGAISWSSKKQSSVSLSMMEAEYVALASAAQEVVWLKKFLEHLLDIAENIEPVLVYYDNEATISSTKDPKFHCKIKHIDIKYNSARDMVRREVVNVKYVSTKDMLADSLTEPLSRDAFVRH 202
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A5A7V287_CUCME (Integrase, catalytic core n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V287_CUCME) HSP 1 Score: 62.8 bits (151), Expect = 1.260e-8 Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1
Query: 58 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
R++ SG ML+ A+S S Q FTLS ++AE++A T A+ +K +L+ +Q + +I +Y DN L+ NP SKH+DV LR L + G I V S Q +I+ KPL F++ R
Sbjct: 186 RKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQE--GSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFR 317
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A5A7UQ30_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UQ30_CUCME) HSP 1 Score: 60.8 bits (146), Expect = 5.720e-8 Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 1
Query: 58 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
R+S S M+++ +S Q FTLS ++AE+VA T A+ +K +L+ + + A +Y DN A L+ NP SKH+DV LR L R G I ++ S Q DI+ KPL AF++ R
Sbjct: 247 RKSTSRYVFMMSSAKISWCSKNQPIFTLSTTEAEFVAATVCTCQAIWLKKILEELYFKQE--GATKVYCDNSSAIKLSKNPVLHKRSKHIDVKFHFLRDLTRDGVIELYYCKSEDQIADIMTKPLKLPAFQKLR 378
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A4U0W4R2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W4R2_9BASI) HSP 1 Score: 60.5 bits (145), Expect = 9.400e-8 Identity = 46/153 (30.07%), Postives = 76/153 (49.67%), Query Frame = 1
Query: 4 PKLWFLAEMDNANNRC-NYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
P F A D+ C + RS G +L + AVS S Q T S ++AEY+ ++H A+ + +L + R I+++ DN+GA AL+ +PQ ++HL + +R V+ G I V + +A D++ K + AF +HR
Sbjct: 942 PLAGFEAYSDSDWGACPSTSRSTMGYTFVLASGAVSWSSKLQPRVTASSTEAEYLGLSHASKEAIHLSQLLSELAQRSG--RPIELFCDNQGANALSRDPQFHNRTRHLRLTEHFVREQVQQGDITVTYIPTARMVADVMTKSIPLPAFIQHR 1092
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A507DAW5_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507DAW5_9FUNG) HSP 1 Score: 58.9 bits (141), Expect = 3.180e-7 Identity = 41/144 (28.47%), Postives = 72/144 (50.00%), Query Frame = 1
Query: 31 DNANNRCNYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLD-FVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
D A N + +S G A+L + A+S T LS ++AEY++ + + I++ ++ + + + ++EDN N S+ SKH++V +R LV Q+ + + +A Q D+L KPLG +AF +HR
Sbjct: 819 DAAYNIHSGAKSQLGYLALLADGAISWKSTKTPIVPLSSTEAEYMS---ISELGREIQSFINLYTALDIPVTMPLTLFEDNMSTIHQCNNDVFSHRSKHINVRYHYIRELVNTKQVTITYIKTADQPADLLTKPLGRDAFSKHR 959
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KRA9_RHOTO (Copia-type polyprotein (Fragment) n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KRA9_RHOTO) HSP 1 Score: 58.2 bits (139), Expect = 6.260e-7 Identity = 47/153 (30.72%), Postives = 71/153 (46.41%), Query Frame = 1
Query: 4 PKLWFLAEMDNANNRC-NYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
P F A D+ C RS G +L N AVS S Q T S+++AEY+ ++H + + +L + A +Y DN+GA AL+ +PQ ++HL + +R V+ G I V + +A D + K L F RHR
Sbjct: 2682 PLRGFEAYSDSDWGACPTTSRSTMGYVFLLANGAVSWSSKLQPRVTASLTEAEYLGLSHACKETVYLTQLLG--ELGFPAEGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 2832
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KQR7_RHOTO (Gag-Pol polyprotein n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KQR7_RHOTO) HSP 1 Score: 57.8 bits (138), Expect = 7.290e-7 Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 1
Query: 61 RSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
RS G +L N AVS S Q T S+++AEY+ ++H + + +L + A +Y DN+GA AL+ +PQ ++HL + +R V+ G I V + +A D + K L F RHR
Sbjct: 371 RSTMGYVFLLANGAVSWSSKLQPRVTASLTEAEYLGLSHACKETVYLTQLLG--ELGFPAEGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 501
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A4U0W146_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W146_9BASI) HSP 1 Score: 57.8 bits (138), Expect = 8.180e-7 Identity = 45/153 (29.41%), Postives = 74/153 (48.37%), Query Frame = 1
Query: 4 PKLWFLAEMDNANNRC-NYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
P F A D+ C + RS G +L + AVS S Q T S ++AEY+ ++H A+ + +L + I+++ DN+GA AL+ +PQ ++HL + +R V+ G I V + +A D++ K L F +HR
Sbjct: 1112 PLAGFEAYSDSDWGACPSTSRSTMGYTFVLASGAVSWSSKLQPRVTASSTEAEYLGLSHASKEAIHLSQLLSELAQGSG--RPIELFGDNQGANALSRDPQFHNRTRHLRLTEHFVREQVQQGDITVTYIPTARMVADVMTKSLPLPGFIQHR 1262
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KB67_RHOTO (Gag-Pol polyprotein n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KB67_RHOTO) HSP 1 Score: 57.4 bits (137), Expect = 1.070e-6 Identity = 47/153 (30.72%), Postives = 70/153 (45.75%), Query Frame = 1
Query: 4 PKLWFLAEMDNANNRC-NYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 459
P F A D+ C RS G +L N AVS S Q T S ++AEY+ ++H + + +L + A +Y DN+GA AL+ +PQ ++HL + +R V+ G I V + +A D + K L F RHR
Sbjct: 687 PLRGFEAYSDSDWGACPTTSRSTMGYVFLLANGAVSWSSKLQPRVTASSTEAEYLGLSHACKETVYLTQLLG--ELGFPAKGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 837 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74482.15133.1 >prot_H-elongata_contig74482.15133.1 ID=prot_H-elongata_contig74482.15133.1|Name=mRNA_H-elongata_contig74482.15133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp MDNANNRCNYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHback to top mRNA from alignment at H-elongata_contig74482:7..465- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74482.15133.1 ID=mRNA_H-elongata_contig74482.15133.1|Name=mRNA_H-elongata_contig74482.15133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig74482:7..465- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74482:7..465- >mRNA_H-elongata_contig74482.15133.1 ID=mRNA_H-elongata_contig74482.15133.1|Name=mRNA_H-elongata_contig74482.15133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig74482:7..465- (Himanthalia elongata Himel1 dioecious)back to top |