mRNA_H-elongata_contig74353.15123.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74353.15123.1
Unique NamemRNA_H-elongata_contig74353.15123.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 9.460e-104
Identity = 164/239 (68.62%), Postives = 192/239 (80.33%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            +AF ++ KLR ALLERAG+I+A RNP AS E P+ G++L+  QLESV  EVF+ELGNMDQTPVQ E+PVETTLEK  AKDARISTGGKEKE FTLCL +MA+G KV LRIIFKG PF  P+   +GK TQPRK SIA EV P N+TNFG+P +GMSFGVQE S  DA EC LW+SESW  RPN+ S+I QR SILVLDDF+ NT+VILI GGL  LLQPLDRML+K+MKRL++ +YT Y
Sbjct:  236 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFRTNTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQY 474          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 8.030e-103
Identity = 163/253 (64.43%), Postives = 187/253 (73.91%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            MA+ ++ KLR+AL+ERA +I+A RNP A  E P+ GE+L SEQLESVTAEVF ELGNMDQTPVQ+E+PVET+LEK  AKDARI+TGGKEKE FTLCL +  +  KV LR IFKGTP   P++P KGK TQPRK SIA E+ P NR+  G+P  GMSFGVQE S CD REC LWI  SW LRPNN S++ QRP ILVLDDFK               NT VI I GGL  LLQPLDRMLNK+MKRLL+G YT Y
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 2.020e-101
Identity = 169/253 (66.80%), Postives = 188/253 (74.31%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            MA+ +V KLR+AL++RAG+I+A R+P A DE P+ GE+L SEQL SV AEVF+ELGNMDQTPVQ+EIPVETTLEK  AKDARISTGGKEKE FTL L +MA+G KVS RIIFKGTPF  P    KGK T PRK S+A E+ P NR   GHPA GMSFGVQE S  D REC  WIS SW+LRPNN SI+ QRP ILVLDDFK               NT VI I G L  LLQPLDRMLNKQMKRLL+ KYTAY
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 3.830e-101
Identity = 168/253 (66.40%), Postives = 188/253 (74.31%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            MA+ +V KLR+AL+ RAG+I+A R+P A DE P+ GE+L  EQL SV AEVF+ELGNMDQTPVQ+E+PVETTLEK  AKDARISTGGKEKE FTL L +MA+G KVS RIIFKGTPF  P    KGK T PRK S+A E+ P NR    HPA GMSFGVQE S  D REC  WIS SW+LRPNN SI+ QRP ILVLDDFK               NT VI+I GGL  LLQPLDRMLNKQMKRLL+GKYTAY
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.500e-96
Identity = 161/248 (64.92%), Postives = 182/248 (73.39%), Query Frame = 1
Query:   16 VEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            V KLR+AL++RAG+I+A R+P A DE P+ GE+L SEQL SV AEVF++LGNMDQTPVQ+E+PVETTLEK  AKDAR+STGG+EKE FTL L + A+G KVSLRIIF GTPF  P    KGK T PRK S+A E+ P NR   GHPA GMSFGVQE S  D REC  W S SW+LRPNN SI+ QRP ILVLDDFK               NT VI I GGL  LLQPLDRMLNKQ KRLL+ KYTAY
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 2.500e-95
Identity = 166/253 (65.61%), Postives = 188/253 (74.31%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            MA+ ++ KLRKALLERAG+I+A+R P A  E P+ GE+L+S QLE VT E+F+ELGNMDQTPVQ+E+PVETTLE   AKDARI+TGGKEKE FTLCL + A+G KV LRIIFKGTPF  P  P KGK TQPRK SIA EV P NR+  G P  GMSFGVQE S CD REC LWI +SW+LRPNN SI+ QR  ILVLDDFK               NT VI I GGL  L QPLDRMLNKQMKRLL+G YTA+
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 1.430e-94
Identity = 166/279 (59.50%), Postives = 190/279 (68.10%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTG--------------------------GKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            MA+ ++ KLRKALLERAG+I+A+R P A  E P+ GE+L+S QLE VT E+F++LGNMDQTPVQYE+PVETTLEK  AKDARI+TG                          GKEKE FTLCL + A+G+KV LRIIFKGTPF  P  P KGK TQPRK SIA EV P NR+  G P  GMSFGVQE S CD RE  LWI +SW+LRPNN S++ QR  ILVLDDFK               NT VI I GGL  LLQPLDRMLNKQMKRLL+G YTA+
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 9.890e-94
Identity = 163/254 (64.17%), Postives = 187/254 (73.62%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGG-KEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            MA+ +V KL +AL++RAG+I+A R+P A DE P+ GE+LNSEQL SV AEVF+E+GNMDQ PVQ+E+PVETTL+K  AKDARISTGG  EKE FTL L + A+G KVS RIIF+GTPF  P    KGK T+PRK  +A E+ P NR   GHPA GMSFGVQE S  D REC  WIS SW+LRPNN SI+ QRP ILVLDDFK               NT VI I GGL  LLQPLDRMLNKQMKRLL+GKYTAY
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 1.350e-91
Identity = 163/261 (62.45%), Postives = 183/261 (70.11%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRL--------RPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
            MA+ +V KLR+AL++RAG+I+A R+P A DE P+ GE+L SEQ  SV AEVF+ELGNMDQTPVQ+E+PVETTLE    KDARISTGGKEKE FTL L +MA+G  VS  IIFKGTPF  P    KGK T PRK S+A EV P NR   GHPA GMSFGVQE S    +EC  WI  SW+L        RPNN SI+ QRP ILVLDDFK               NT VI I GGL  LLQPLDRMLNKQMKRLL+GKYTAY
Sbjct:  217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477          
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 4.620e-89
Identity = 157/248 (63.31%), Postives = 183/248 (73.79%), Query Frame = 1
Query:    1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQG 702
            +AF ++ KLR ALLERAG+I+A RNP AS E P+ G++L   QLESV A+VF+ELGNMDQTPVQ E+PVETTLEKR  KDARISTGGKEK+ FT CL +MA+G KV  RIIFKG PF  P+   + K TQ RK  IA EV   NRT FG+P +GM F VQE S CDAREC LW+SESWR RPN+ S+I QR SILVLDDF+               NT+VILI GGL  LLQPLDRMLNK+MKRL++G
Sbjct:  132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQM5_9PHAE9.460e-10468.62DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FXD3_ECTSI8.030e-10364.43DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.020e-10166.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE3.830e-10166.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE1.500e-9664.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE2.500e-9565.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE1.430e-9459.50DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE9.890e-9464.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE1.350e-9162.45DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE4.620e-8963.31Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74353contigH-elongata_contig74353:634..1577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size717
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74353.15123.1prot_H-elongata_contig74353.15123.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74353 872..1485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.18777-UTR-H-elongata_contig74353:633..8711622931148.18777-UTR-H-elongata_contig74353:633..871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74353 634..871 +
1691679718.2346816-UTR-H-elongata_contig74353:633..8711691679718.2346816-UTR-H-elongata_contig74353:633..871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74353 634..871 +
1622931148.2398832-UTR-H-elongata_contig74353:1485..15771622931148.2398832-UTR-H-elongata_contig74353:1485..1577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74353 1486..1577 +
1691679718.2747555-UTR-H-elongata_contig74353:1485..15771691679718.2747555-UTR-H-elongata_contig74353:1485..1577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74353 1486..1577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.2022617-CDS-H-elongata_contig74353:871..8921622931148.2022617-CDS-H-elongata_contig74353:871..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74353 872..892 +
1691679718.244148-CDS-H-elongata_contig74353:871..8921691679718.244148-CDS-H-elongata_contig74353:871..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74353 872..892 +
1622931148.221065-CDS-H-elongata_contig74353:1119..14851622931148.221065-CDS-H-elongata_contig74353:1119..1485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74353 1120..1485 +
1691679718.2542675-CDS-H-elongata_contig74353:1119..14851691679718.2542675-CDS-H-elongata_contig74353:1119..1485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74353 1120..1485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74353.15123.1

>prot_H-elongata_contig74353.15123.1 ID=prot_H-elongata_contig74353.15123.1|Name=mRNA_H-elongata_contig74353.15123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MLASAQEERKRSTSLSVLVSWRTAARFRYASSSKVRRSTCRTSRRRAREL
SRGSSPSQQRLPLGIVPISGTPRRACRLVCRRIADVTRGSAPFGYRRAGG
FAPTTEVSSRSARASWCWTTSNKTPASS*
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mRNA from alignment at H-elongata_contig74353:634..1577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74353.15123.1 ID=mRNA_H-elongata_contig74353.15123.1|Name=mRNA_H-elongata_contig74353.15123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=944bp|location=Sequence derived from alignment at H-elongata_contig74353:634..1577+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTTGGATCAGTGGAGAAGCTTAGGAAGGCTCTTCTGGAGCGCGC TGGGAAAATCTTCGCTGAGCGCAACCCGTGTGCGTCTGATGAGCTACCCG TGAACGGGGAGGAGCTGAATTCCGAGCAGCTGGAGTCGGTGACGGCGGAG GTTTTCCAAGAACTCGGCAATATGGACCAGACGCCCGTCCAGTACGAGAT ACCGGTGGAGACAACTCTGGAGAAGCGTAGTGCAAAGGATGCTCGCATCA GCACAGGAGGTGAGAGCATTGCGGCTGCGTGCTTGTCGATAGTATGTGTT TTGCATCTTTTTAATGTTTTTATTGTACGATTGCTGCTGCTGCTGCTGCC ACAACGCGATTTTGTTTTCTCTAGATGATAGGTATTTTGGCACAGTAAAA TGCCCCGCATCGTGAATACGAAGTATAAATCAAAACATGCAACTTTAGCC CCCTCCCGCCCTCTCTTTGTGTCGACTCCCCCGTAGGAAAGGAAAAGGAG CACTTCACTCTCTGTCTTGGTATCATGGCGAACGGCAGCAAGGTTTCGCT ACGCATCATCTTCAAAGGTACGCCGTTCAACTTGCCGAACAAGCCGGAGA AGGGCAAGAGAACTCAGCCGCGGAAGTAGTCCATCGCAACAGAGGTTGCC CCTGGGAATCGTACCAATTTCGGGCACCCCGCGGCGGGCATGTCGTTTGG TGTGCAGGAGAATAGCTGATGTGACGCGCGGGAGTGCGCCCTTTGGATAT CGGAGAGCTGGAGGCTTCGCCCCAACAACAGAAGTATCATCACGCAGCGC CCGAGCATCCTGGTGTTGGACGACTTCAAATAAAACACCAGCGTCATCCT GATCCTGGGCGGGTTGGCTTCTCTCCTCCAGCCGCTGGACCGCATGCTCA ACAAGCAGATGAAGCGGCTACTGCAGGGGAAGTACACCGCCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig74353:634..1577+

>mRNA_H-elongata_contig74353.15123.1 ID=mRNA_H-elongata_contig74353.15123.1|Name=mRNA_H-elongata_contig74353.15123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig74353:634..1577+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGCATCAGCACAGGAGATGCTCGCATCAGCACAGGAGGAAAGGAA
AAGGAGCACTTCACTCTCTGTCTTGGTATCATGGCGAACGGCAGCAAGGT
TTCGCTACGCATCATCTTCAAAGGTACGCCGTTCAACTTGCCGAACAAGC
CGGAGAAGGGCAAGAGAACTCAGCCGCGGAAGTAGTCCATCGCAACAGAG
GTTGCCCCTGGGAATCGTACCAATTTCGGGCACCCCGCGGCGGGCATGTC
GTTTGGTGTGCAGGAGAATAGCTGATGTGACGCGCGGGAGTGCGCCCTTT
GGATATCGGAGAGCTGGAGGCTTCGCCCCAACAACAGAAGTATCATCACG
CAGCGCCCGAGCATCCTGGTGTTGGACGACTTCAAATAAAACACCAGCGT
CATCCTGAGAAAGGAAAAGGAGCACTTCACTCTCTGTCTTGGTATCATGG
CGAACGGCAGCAAGGTTTCGCTACGCATCATCTTCAAAGGTACGCCGTTC
AACTTGCCGAACAAGCCGGAGAAGGGCAAGAGAACTCAGCCGCGGAAGTA
GTCCATCGCAACAGAGGTTGCCCCTGGGAATCGTACCAATTTCGGGCACC
CCGCGGCGGGCATGTCGTTTGGTGTGCAGGAGAATAGCTGATGTGACGCG
CGGGAGTGCGCCCTTTGGATATCGGAGAGCTGGAGGCTTCGCCCCAACAA
CAGAAGTATCATCACGCAGCGCCCGAGCATCCTGGTGTTGGACGACTTCA
AATAAAACACCAGCGTCATCCTGA
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