mRNA_H-elongata_contig74353.15123.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE) HSP 1 Score: 321 bits (823), Expect = 9.460e-104 Identity = 164/239 (68.62%), Postives = 192/239 (80.33%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
+AF ++ KLR ALLERAG+I+A RNP AS E P+ G++L+ QLESV EVF+ELGNMDQTPVQ E+PVETTLEK AKDARISTGGKEKE FTLCL +MA+G KV LRIIFKG PF P+ +GK TQPRK SIA EV P N+TNFG+P +GMSFGVQE S DA EC LW+SESW RPN+ S+I QR SILVLDDF+ NT+VILI GGL LLQPLDRML+K+MKRL++ +YT Y
Sbjct: 236 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFRTNTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQY 474
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 307 bits (787), Expect = 8.030e-103 Identity = 163/253 (64.43%), Postives = 187/253 (73.91%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
MA+ ++ KLR+AL+ERA +I+A RNP A E P+ GE+L SEQLESVTAEVF ELGNMDQTPVQ+E+PVET+LEK AKDARI+TGGKEKE FTLCL + + KV LR IFKGTP P++P KGK TQPRK SIA E+ P NR+ G+P GMSFGVQE S CD REC LWI SW LRPNN S++ QRP ILVLDDFK NT VI I GGL LLQPLDRMLNK+MKRLL+G YT Y
Sbjct: 1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 311 bits (797), Expect = 2.020e-101 Identity = 169/253 (66.80%), Postives = 188/253 (74.31%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
MA+ +V KLR+AL++RAG+I+A R+P A DE P+ GE+L SEQL SV AEVF+ELGNMDQTPVQ+EIPVETTLEK AKDARISTGGKEKE FTL L +MA+G KVS RIIFKGTPF P KGK T PRK S+A E+ P NR GHPA GMSFGVQE S D REC WIS SW+LRPNN SI+ QRP ILVLDDFK NT VI I G L LLQPLDRMLNKQMKRLL+ KYTAY
Sbjct: 63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 309 bits (791), Expect = 3.830e-101 Identity = 168/253 (66.40%), Postives = 188/253 (74.31%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
MA+ +V KLR+AL+ RAG+I+A R+P A DE P+ GE+L EQL SV AEVF+ELGNMDQTPVQ+E+PVETTLEK AKDARISTGGKEKE FTL L +MA+G KVS RIIFKGTPF P KGK T PRK S+A E+ P NR HPA GMSFGVQE S D REC WIS SW+LRPNN SI+ QRP ILVLDDFK NT VI+I GGL LLQPLDRMLNKQMKRLL+GKYTAY
Sbjct: 63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 298 bits (762), Expect = 1.500e-96 Identity = 161/248 (64.92%), Postives = 182/248 (73.39%), Query Frame = 1
Query: 16 VEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
V KLR+AL++RAG+I+A R+P A DE P+ GE+L SEQL SV AEVF++LGNMDQTPVQ+E+PVETTLEK AKDAR+STGG+EKE FTL L + A+G KVSLRIIF GTPF P KGK T PRK S+A E+ P NR GHPA GMSFGVQE S D REC W S SW+LRPNN SI+ QRP ILVLDDFK NT VI I GGL LLQPLDRMLNKQ KRLL+ KYTAY
Sbjct: 2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE) HSP 1 Score: 311 bits (797), Expect = 2.500e-95 Identity = 166/253 (65.61%), Postives = 188/253 (74.31%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
MA+ ++ KLRKALLERAG+I+A+R P A E P+ GE+L+S QLE VT E+F+ELGNMDQTPVQ+E+PVETTLE AKDARI+TGGKEKE FTLCL + A+G KV LRIIFKGTPF P P KGK TQPRK SIA EV P NR+ G P GMSFGVQE S CD REC LWI +SW+LRPNN SI+ QR ILVLDDFK NT VI I GGL L QPLDRMLNKQMKRLL+G YTA+
Sbjct: 217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 297 bits (760), Expect = 1.430e-94 Identity = 166/279 (59.50%), Postives = 190/279 (68.10%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTG--------------------------GKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
MA+ ++ KLRKALLERAG+I+A+R P A E P+ GE+L+S QLE VT E+F++LGNMDQTPVQYE+PVETTLEK AKDARI+TG GKEKE FTLCL + A+G+KV LRIIFKGTPF P P KGK TQPRK SIA EV P NR+ G P GMSFGVQE S CD RE LWI +SW+LRPNN S++ QR ILVLDDFK NT VI I GGL LLQPLDRMLNKQMKRLL+G YTA+
Sbjct: 150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 298 bits (762), Expect = 9.890e-94 Identity = 163/254 (64.17%), Postives = 187/254 (73.62%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGG-KEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
MA+ +V KL +AL++RAG+I+A R+P A DE P+ GE+LNSEQL SV AEVF+E+GNMDQ PVQ+E+PVETTL+K AKDARISTGG EKE FTL L + A+G KVS RIIF+GTPF P KGK T+PRK +A E+ P NR GHPA GMSFGVQE S D REC WIS SW+LRPNN SI+ QRP ILVLDDFK NT VI I GGL LLQPLDRMLNKQMKRLL+GKYTAY
Sbjct: 257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE) HSP 1 Score: 290 bits (743), Expect = 1.350e-91 Identity = 163/261 (62.45%), Postives = 183/261 (70.11%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRL--------RPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQGKYTAY 717
MA+ +V KLR+AL++RAG+I+A R+P A DE P+ GE+L SEQ SV AEVF+ELGNMDQTPVQ+E+PVETTLE KDARISTGGKEKE FTL L +MA+G VS IIFKGTPF P KGK T PRK S+A EV P NR GHPA GMSFGVQE S +EC WI SW+L RPNN SI+ QRP ILVLDDFK NT VI I GGL LLQPLDRMLNKQMKRLL+GKYTAY
Sbjct: 217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 294 bits (752), Expect = 4.620e-89 Identity = 157/248 (63.31%), Postives = 183/248 (73.79%), Query Frame = 1
Query: 1 MAFGSVEKLRKALLERAGKIFAERNPCASDELPVNGEELNSEQLESVTAEVFQELGNMDQTPVQYEIPVETTLEKRSAKDARISTGGKEKEHFTLCLGIMANGSKVSLRIIFKGTPFNLPNKPEKGKRTQPRK*SIATEVAPGNRTNFGHPAAGMSFGVQENS*CDARECALWISESWRLRPNNRSIITQRPSILVLDDFK*--------------NTSVILILGGLASLLQPLDRMLNKQMKRLLQG 702
+AF ++ KLR ALLERAG+I+A RNP AS E P+ G++L QLESV A+VF+ELGNMDQTPVQ E+PVETTLEKR KDARISTGGKEK+ FT CL +MA+G KV RIIFKG PF P+ + K TQ RK IA EV NRT FG+P +GM F VQE S CDAREC LW+SESWR RPN+ S+I QR SILVLDDF+ NT+VILI GGL LLQPLDRMLNK+MKRL++G
Sbjct: 132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74353.15123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74353.15123.1 >prot_H-elongata_contig74353.15123.1 ID=prot_H-elongata_contig74353.15123.1|Name=mRNA_H-elongata_contig74353.15123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp MLASAQEERKRSTSLSVLVSWRTAARFRYASSSKVRRSTCRTSRRRARELback to top mRNA from alignment at H-elongata_contig74353:634..1577+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74353.15123.1 ID=mRNA_H-elongata_contig74353.15123.1|Name=mRNA_H-elongata_contig74353.15123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=944bp|location=Sequence derived from alignment at H-elongata_contig74353:634..1577+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74353:634..1577+ >mRNA_H-elongata_contig74353.15123.1 ID=mRNA_H-elongata_contig74353.15123.1|Name=mRNA_H-elongata_contig74353.15123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig74353:634..1577+ (Himanthalia elongata Himel1 dioecious)back to top |