mRNA_H-elongata_contig74180.15111.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A6H5JGH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH1_9PHAE) HSP 1 Score: 304 bits (779), Expect = 5.240e-96 Identity = 191/360 (53.06%), Postives = 216/360 (60.00%), Query Frame = 1
Query: 1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSG--------KQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEG-----------------------------------------------------------------------RRGDSDGLGLTMFDRVLRDIEGEVCRMLDVQYRMNRDICDWASKE-------MYGGLLRADPSVAGRTLPMLPHASKAQ---------DMAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
LLP +V+EHS+EA+VSRH+GTAIVKD+R +ID L+ RL+ + G + R+R +R+ AR E EARARE VV+EVLRSRDVVLATCVGA THSLR+E+FDLVVIDEAAQALE+ACWIPILKG+RLVLAGDHKQLAPTVKS A G G DGLGLTMFDRVLRD+ VCRML+VQYRMNRDICDWAS E MYGGLL A PSVA R LP LPHAS + +M AAVMLL+DTTGCDM EE AGGGSRRN+ EAEV VRHV
Sbjct: 228 LLP-QVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLYGEPGTGGGGRAGGVSKSRSRIRGADRKGARME------EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPRAPPRSPGAHGGNSKDGGXXXXXXXXVGTGWGXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGDGLGLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEVGDRAVCMYGGLLLAHPSVAERKLPDLPHASSSAGSSTKEEGVEMWAAVMLLVDTTGCDMPEEDAGGGSRRNEREAEVVVRHV 580
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI) HSP 1 Score: 293 bits (751), Expect = 5.760e-88 Identity = 184/328 (56.10%), Postives = 207/328 (63.11%), Query Frame = 1
Query: 1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNS-----------SGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEG----------------------RRGDS-DGLG---------------LTMFDRVLRDIEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQDMAAAVMLLL--------------DTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
LLP +V+EHS+EA+VSRH+GTAIVKD+R +ID L+ RL ++ S + R+R +R+ AR E EARARE VV+EVLRSRDVVLATCVGA THSLR+E+FDLVVIDEAAQALE+ACWIPILKG+RLVLAGDHKQLAPTVKS A G G+S DG G LTMFDRVLRD+ VCRML+VQYRMNRDICDWAS EMYGGLL A PSVA R LP LPH S DTTGCDM EE AGGGSRRN+ EAEVAVRHV
Sbjct: 320 LLP-QVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLHGESGTGXXXXXXXXXXVSKSRSRIRGADRKGARME------EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPHAPARSPGAHGGNSKDGGGVXXXXXXXXXXXXXXLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHTSAXXXXXXXXXXXXXXXXXXXXXXXXXXDTTGCDMPEEDAGGGSRRNEREAEVAVRHV 640
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A835Z7I8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I8_9STRA) HSP 1 Score: 252 bits (643), Expect = 2.790e-73 Identity = 150/286 (52.45%), Postives = 174/286 (60.84%), Query Frame = 1
Query: 1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRL----------FPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRDIEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQDMAAAVMLLLDTTGCDMYEEKAGGG-----------SRRNKGEAEVAVRHV 795
LLP V+ HSL+A+V H+GTA+V D R E L +L +RR+ R +L +LRKE R RE+ VV VLR R VVLATCVGA T LRDE FDLVVIDEAAQALE+ACW+P LKG+RLVLAGDHKQL PT+K AA GLG+T+FDR+L + RMLDVQYRM+ DIC WAS MY G L S A RTLP LPH + A+DM AA +LLLDT GCDM E+ AG S RN GEA VA HV
Sbjct: 299 LLP-AVLRHSLDALVRAHEGTALVADARAEAAALRAQLTGRXXXXXXXXXXXXXXXXXXXXXXXXDRRAVRAQLSALRKEIRVREEGVVASVLRKRRVVLATCVGAATRLLRDETFDLVVIDEAAQALEAACWVPALKGRRLVLAGDHKQLPPTIKCDAAARA------GLGVTLFDRLLAAHGDGIARMLDVQYRMHADICSWASAAMYSGRLLPHASAAARTLPALPHVTAARDMTAAPLLLLDTAGCDMREDSAGXXXXXXXXXXXXXSHRNPGEAAVAAAHV 577
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: W7TRN4_9STRA (Dna-binding protein smubp-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRN4_9STRA) HSP 1 Score: 228 bits (582), Expect = 4.200e-66 Identity = 148/300 (49.33%), Postives = 178/300 (59.33%), Query Frame = 1
Query: 25 HSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRD------IEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKA-------QDMAAAVMLLLDTTGCDMYEEKAG------------------------------GGSRRNKGEAEVAVRHV 795
+SLEA+V DGTA+V+DIR E+ L RR S K +LR RR R E ++LR+E R RE VV EV+ SR+VVL TCVGAG LR+E FDLVVIDEAAQALE+ACWIPI +G R+VLAGDHKQLAPTVKS R ++ GLG+T+FDR++R+ G C ML VQYRM+ DIC WAS+ MY G LRADPSVAGRTL L + +DM AV+L LDT GC M EE+ SR N+GEA+V HV
Sbjct: 342 YSLEALVEGADGTALVRDIRAELAALERR------GVSPKTPQLREA-RRQWRSETRALRRELRTREARVVGEVVSSREVVLCTCVGAGARVLREERFDLVVIDEAAQALEAACWIPIQRGGRVVLAGDHKQLAPTVKS------GRAEALGLGVTLFDRLMREDGFGGPAGGRAC-MLQVQYRMHADICAWASRAMYQGRLRADPSVAGRTLAGLGKGEREDGEEDGDEDMTEAVLLFLDTAGCGMEEEEGERPPSPXXXXXXXXXXRPRAPKKTVRARSLLSSSRANEGEAQVVAAHV 627
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A7S4T598_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T598_9STRA) HSP 1 Score: 213 bits (541), Expect = 2.090e-60 Identity = 131/275 (47.64%), Postives = 172/275 (62.55%), Query Frame = 1
Query: 4 LPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSL------RDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVL--RDIEG-EVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQD--MAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
+ + + +SLE++V DGT +V D+R E+ V+ L + S +RR AR E+K LRKE RARE+ VV ++L + DVVLAT VGAG+ +L R E FDLVVIDEAAQALE++CWI ILKGKRLVLAGDHKQL PT+KS R GLG T+F+R++ + +G ++ RML QYRMN DI +WASK YGG L + +V L LPH + D + + +LL+D+ GCDM+E GSR N GEA+V HV
Sbjct: 47 IKSSIQPYSLESLVQCADGTEVVNDVRSELASYVKVLSDEKSRYS---------DRRVARREVKILRKELRAREEGVVADLLMNSDVVLATNVGAGSSTLSKYLQKRGEGFDLVVIDEAAQALEASCWISILKGKRLVLAGDHKQLPPTIKSNEVRVQR-----GLGRTLFERIMGSKQEDGKQMSRMLRTQYRMNADIANWASKASYGGNLISHKTVEAHKLSDLPHVTPGVDDVLNFSPLLLIDSAGCDMHETVNSAGSRYNDGEAKVVAIHV 307
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A448ZKX4_9STRA (R3H domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKX4_9STRA) HSP 1 Score: 213 bits (541), Expect = 2.840e-59 Identity = 125/292 (42.81%), Postives = 174/292 (59.59%), Query Frame = 1
Query: 16 VVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRP-----MERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLR---------------DEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVL---RDIEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASK---------AQDMAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
+++HSLEA+V DGT IV+D+R E++ +R + D + G+ RP +++R+A ++ +LR+E RARE+ VVRE++RS VVLAT VGA +L D FDLVVIDEAAQALE++CWIPIL+G+++VLAGDH QL PT+KS GLG+T+F+R++ R E E+ RML +QYRM+ I DWAS MY G L S RTL L K +++ +LL+DT GC M+E + GSR N+GEA + +HV
Sbjct: 338 ILKHSLEALVQSSDGTEIVRDVRRELEACLRTVSRDRSGAGGRSGSGRPRKKDALDKRAAYRDIGTLRREVRAREEKVVRELIRSAHVVLATTVGADNRALNSITNPTETDGHTAGDDPGFDLVVIDEAAQALEASCWIPILRGRKVVLAGDHCQLPPTIKSKDPRVAA-----GLGVTLFERLMDLYRTREREISRMLKIQYRMHHQIADWASSAMYRGELETHESARSRTLGQLVSVRKRLGSEASAGTENLGETTLLLIDTAGCGMHEGETEAGSRFNEGEASIVEKHV 624
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: K3X5G7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5G7_GLOUD) HSP 1 Score: 207 bits (528), Expect = 5.940e-59 Identity = 135/281 (48.04%), Postives = 171/281 (60.85%), Query Frame = 1
Query: 1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLR-DIEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHAS--KAQDMAAAVMLLLDTTGCDMYEE-------KAGGGS------RRNKGEAEVAVRHV 795
LLP +V+++ L+A V +GT IV DIR E+ + +L D S R + R ELK RKE R RE NVV+E++R DVV AT VGA + L+D FDLVVIDEAAQALE++CWIPILK KR VLAGDH QL PT+KS +AA SDGL LT+FDR+ R V +ML +QYRM+ I DW+S+ MY L++ VA R L LPH S + DM A +LLLDT GC++ E+ A GGS + N+GEA V +HV
Sbjct: 297 LLP-QVLKYCLDAKVEVAEGTEIVNDIRNEMTTMQTQLQKTRDKSV----------RFNLRRELKVNRKEIRQREQNVVQELVRRSDVVFATNVGASSKLLKDTTFDLVVIDEAAQALEASCWIPILKAKRCVLAGDHLQLPPTIKSKSAA------SDGLELTLFDRITRFQSTQNVVKMLKIQYRMHEHISDWSSRAMYDNELQSFDGVARRKLHELPHVSIQEDDDMLNATLLLLDTAGCELEEDGDDDDGVPAKGGSSVLKLSKSNEGEARVVAKHV 560
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A5D6Y5R7_9STRA (AN1-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5R7_9STRA) HSP 1 Score: 207 bits (526), Expect = 2.170e-57 Identity = 134/281 (47.69%), Postives = 170/281 (60.50%), Query Frame = 1
Query: 1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRDIEG--EVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQD--MAAAVMLLLDTTGCDMYEEK-------AGGG-----SRRNKGEAEVAVRHV 795
LLP +V+ H LEA ++ DGT IV DIR E+ + +L D + R + R +LK+ RKE R RE VV E+++ DVV AT VGA + L+D FDLVVIDEAAQALE+ACW+PILK KR VLAGDHKQL PT+KS AA +DGL LT+FDRV R + G V +ML QYRM+ I DW+S+ MY G L + VA R L LPH + A D + A +LLLDT GC + E++ G G S+ N+GEA V +HV
Sbjct: 277 LLP-QVLRHCLEAKIAAADGTEIVNDIRKEMVAMQAQLSKTRDKGA----------RFALRRDLKANRKEVRQREHKVVVELVKHSDVVFATNVGAASKLLKDATFDLVVIDEAAQALEAACWVPILKAKRCVLAGDHKQLPPTIKSKAAA------ADGLELTLFDRVTR-LAGTQSVVKMLTTQYRMHARISDWSSRAMYDGALESFEGVATRKLHELPHVTIAADDELLNATLLLLDTAGCGLEEDRPDSESGRGGNGELAQLSKSNEGEARVVAKHV 539
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A7S2LQ57_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQ57_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.170e-56 Identity = 129/279 (46.24%), Postives = 173/279 (62.01%), Query Frame = 1
Query: 16 VVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSL-RDED-------FDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRDIEGE---VCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHAS--------KAQDMAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
+ ++SLE++V DGT IV+D R E++ +R L SS E+R A E+KSLRKE R+RE+ VV +VLR +VVLAT VGA + L R D FDLV+IDEAAQALE++CWI +L+GKR VLAGDHKQL PT+KS T E + +GLG T+F+R++ E E +ML+VQYRM++DI +WASK MY G L + SV R L LP + + + ++L+DTTGCDM+E GSR N+GEA + + HV
Sbjct: 39 IQKYSLESLVQASDGTEIVRDCRNEMNDHLRTLSNPKSRSS---------EKRIAYREMKSLRKEIRSREEKVVGQVLRDSNVVLATNVGAASSVLNRMVDSRGDPIPFDLVIIDEAAQALEASCWISLLRGKRAVLAGDHKQLPPTIKS-TVNEVK----NGLGQTLFERLMTSYEKESSGCSKMLEVQYRMHQDIANWASKAMYHGKLLSHESVKERKLIDLPQVTANTNGGGTSNEGIEHTTLMLIDTTGCDMHETLNEAGSRYNEGEAGIVISHV 303
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A485KRK6_9STRA (Aste57867_10895 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRK6_9STRA) HSP 1 Score: 202 bits (515), Expect = 5.330e-56 Identity = 128/270 (47.41%), Postives = 167/270 (61.85%), Query Frame = 1
Query: 1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPME--RRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRDIEG-EVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQD--MAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
LLP +V++H L+A + R +GT I+ DIR E+ L +P + R + R+E K LRKE R RE VV E+++ DVV AT GA T LRD+ FD+V+IDEAAQALE +CWIP+LK KR VLAGDH+QL PTVKS A RR GLT+FDRV+ +V RML QYRM+ DI DWASK MY G L + +VA R L LPH + +D + A +L++DT GC + E+++ S+ N GEA V V+HV
Sbjct: 281 LLP-QVLKHCLDAKIQRAEGTQIIADIRKELAAL------------------KPTKATRFAVRQESKLLRKEIRMREQKVVTEIVQHSDVVFATNAGAATKLLRDQVFDVVIIDEAAQALEVSCWIPLLKAKRCVLAGDHQQLPPTVKSQLAP--RR------GLTLFDRVVDMAHTTDVVRMLSTQYRMHADISDWASKAMYEGKLLSSDAVATRKLQDLPHVASGEDDSLVHATLLIVDTAGCGLDEDESEQMSKSNAGEAGVVVKHV 523 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74180.15111.1 >prot_H-elongata_contig74180.15111.1 ID=prot_H-elongata_contig74180.15111.1|Name=mRNA_H-elongata_contig74180.15111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRback to top mRNA from alignment at H-elongata_contig74180:850..2967- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74180.15111.1 ID=mRNA_H-elongata_contig74180.15111.1|Name=mRNA_H-elongata_contig74180.15111.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2118bp|location=Sequence derived from alignment at H-elongata_contig74180:850..2967- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74180:850..2967- >mRNA_H-elongata_contig74180.15111.1 ID=mRNA_H-elongata_contig74180.15111.1|Name=mRNA_H-elongata_contig74180.15111.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig74180:850..2967- (Himanthalia elongata Himel1 dioecious)back to top |