mRNA_H-elongata_contig74180.15111.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74180.15111.1
Unique NamemRNA_H-elongata_contig74180.15111.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A6H5JGH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH1_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 5.240e-96
Identity = 191/360 (53.06%), Postives = 216/360 (60.00%), Query Frame = 1
Query:    1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSG--------KQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEG-----------------------------------------------------------------------RRGDSDGLGLTMFDRVLRDIEGEVCRMLDVQYRMNRDICDWASKE-------MYGGLLRADPSVAGRTLPMLPHASKAQ---------DMAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
            LLP +V+EHS+EA+VSRH+GTAIVKD+R +ID L+ RL+ +     G         + R+R  +R+ AR E      EARARE  VV+EVLRSRDVVLATCVGA THSLR+E+FDLVVIDEAAQALE+ACWIPILKG+RLVLAGDHKQLAPTVKS  A  G                                                                         G  DGLGLTMFDRVLRD+   VCRML+VQYRMNRDICDWAS E       MYGGLL A PSVA R LP LPHAS +          +M AAVMLL+DTTGCDM EE AGGGSRRN+ EAEV VRHV
Sbjct:  228 LLP-QVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLYGEPGTGGGGRAGGVSKSRSRIRGADRKGARME------EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPRAPPRSPGAHGGNSKDGGXXXXXXXXVGTGWGXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGDGLGLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEVGDRAVCMYGGLLLAHPSVAERKLPDLPHASSSAGSSTKEEGVEMWAAVMLLVDTTGCDMPEEDAGGGSRRNEREAEVVVRHV 580          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 5.760e-88
Identity = 184/328 (56.10%), Postives = 207/328 (63.11%), Query Frame = 1
Query:    1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNS-----------SGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEG----------------------RRGDS-DGLG---------------LTMFDRVLRDIEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQDMAAAVMLLL--------------DTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
            LLP +V+EHS+EA+VSRH+GTAIVKD+R +ID L+ RL  ++              S  + R+R  +R+ AR E      EARARE  VV+EVLRSRDVVLATCVGA THSLR+E+FDLVVIDEAAQALE+ACWIPILKG+RLVLAGDHKQLAPTVKS  A  G                        G+S DG G               LTMFDRVLRD+   VCRML+VQYRMNRDICDWAS EMYGGLL A PSVA R LP LPH S                           DTTGCDM EE AGGGSRRN+ EAEVAVRHV
Sbjct:  320 LLP-QVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLHGESGTGXXXXXXXXXXVSKSRSRIRGADRKGARME------EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPHAPARSPGAHGGNSKDGGGVXXXXXXXXXXXXXXLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHTSAXXXXXXXXXXXXXXXXXXXXXXXXXXDTTGCDMPEEDAGGGSRRNEREAEVAVRHV 640          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A835Z7I8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I8_9STRA)

HSP 1 Score: 252 bits (643), Expect = 2.790e-73
Identity = 150/286 (52.45%), Postives = 174/286 (60.84%), Query Frame = 1
Query:    1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRL----------FPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRDIEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQDMAAAVMLLLDTTGCDMYEEKAGGG-----------SRRNKGEAEVAVRHV 795
            LLP  V+ HSL+A+V  H+GTA+V D R E   L  +L                           +RR+ R +L +LRKE R RE+ VV  VLR R VVLATCVGA T  LRDE FDLVVIDEAAQALE+ACW+P LKG+RLVLAGDHKQL PT+K   AA        GLG+T+FDR+L      + RMLDVQYRM+ DIC WAS  MY G L    S A RTLP LPH + A+DM AA +LLLDT GCDM E+ AG             S RN GEA VA  HV
Sbjct:  299 LLP-AVLRHSLDALVRAHEGTALVADARAEAAALRAQLTGRXXXXXXXXXXXXXXXXXXXXXXXXDRRAVRAQLSALRKEIRVREEGVVASVLRKRRVVLATCVGAATRLLRDETFDLVVIDEAAQALEAACWVPALKGRRLVLAGDHKQLPPTIKCDAAARA------GLGVTLFDRLLAAHGDGIARMLDVQYRMHADICSWASAAMYSGRLLPHASAAARTLPALPHVTAARDMTAAPLLLLDTAGCDMREDSAGXXXXXXXXXXXXXSHRNPGEAAVAAAHV 577          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: W7TRN4_9STRA (Dna-binding protein smubp-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRN4_9STRA)

HSP 1 Score: 228 bits (582), Expect = 4.200e-66
Identity = 148/300 (49.33%), Postives = 178/300 (59.33%), Query Frame = 1
Query:   25 HSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRD------IEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKA-------QDMAAAVMLLLDTTGCDMYEEKAG------------------------------GGSRRNKGEAEVAVRHV 795
            +SLEA+V   DGTA+V+DIR E+  L RR        S K  +LR   RR  R E ++LR+E R RE  VV EV+ SR+VVL TCVGAG   LR+E FDLVVIDEAAQALE+ACWIPI +G R+VLAGDHKQLAPTVKS       R ++ GLG+T+FDR++R+        G  C ML VQYRM+ DIC WAS+ MY G LRADPSVAGRTL  L    +        +DM  AV+L LDT GC M EE+                                  SR N+GEA+V   HV
Sbjct:  342 YSLEALVEGADGTALVRDIRAELAALERR------GVSPKTPQLREA-RRQWRSETRALRRELRTREARVVGEVVSSREVVLCTCVGAGARVLREERFDLVVIDEAAQALEAACWIPIQRGGRVVLAGDHKQLAPTVKS------GRAEALGLGVTLFDRLMREDGFGGPAGGRAC-MLQVQYRMHADICAWASRAMYQGRLRADPSVAGRTLAGLGKGEREDGEEDGDEDMTEAVLLFLDTAGCGMEEEEGERPPSPXXXXXXXXXXRPRAPKKTVRARSLLSSSRANEGEAQVVAAHV 627          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A7S4T598_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T598_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.090e-60
Identity = 131/275 (47.64%), Postives = 172/275 (62.55%), Query Frame = 1
Query:    4 LPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSL------RDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVL--RDIEG-EVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQD--MAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
            + + +  +SLE++V   DGT +V D+R E+   V+ L  +    S         +RR AR E+K LRKE RARE+ VV ++L + DVVLAT VGAG+ +L      R E FDLVVIDEAAQALE++CWI ILKGKRLVLAGDHKQL PT+KS      R     GLG T+F+R++  +  +G ++ RML  QYRMN DI +WASK  YGG L +  +V    L  LPH +   D  +  + +LL+D+ GCDM+E     GSR N GEA+V   HV
Sbjct:   47 IKSSIQPYSLESLVQCADGTEVVNDVRSELASYVKVLSDEKSRYS---------DRRVARREVKILRKELRAREEGVVADLLMNSDVVLATNVGAGSSTLSKYLQKRGEGFDLVVIDEAAQALEASCWISILKGKRLVLAGDHKQLPPTIKSNEVRVQR-----GLGRTLFERIMGSKQEDGKQMSRMLRTQYRMNADIANWASKASYGGNLISHKTVEAHKLSDLPHVTPGVDDVLNFSPLLLIDSAGCDMHETVNSAGSRYNDGEAKVVAIHV 307          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A448ZKX4_9STRA (R3H domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKX4_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.840e-59
Identity = 125/292 (42.81%), Postives = 174/292 (59.59%), Query Frame = 1
Query:   16 VVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRP-----MERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLR---------------DEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVL---RDIEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASK---------AQDMAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
            +++HSLEA+V   DGT IV+D+R E++  +R +  D   + G+    RP     +++R+A  ++ +LR+E RARE+ VVRE++RS  VVLAT VGA   +L                D  FDLVVIDEAAQALE++CWIPIL+G+++VLAGDH QL PT+KS            GLG+T+F+R++   R  E E+ RML +QYRM+  I DWAS  MY G L    S   RTL  L    K          +++    +LL+DT GC M+E +   GSR N+GEA +  +HV
Sbjct:  338 ILKHSLEALVQSSDGTEIVRDVRRELEACLRTVSRDRSGAGGRSGSGRPRKKDALDKRAAYRDIGTLRREVRAREEKVVRELIRSAHVVLATTVGADNRALNSITNPTETDGHTAGDDPGFDLVVIDEAAQALEASCWIPILRGRKVVLAGDHCQLPPTIKSKDPRVAA-----GLGVTLFERLMDLYRTREREISRMLKIQYRMHHQIADWASSAMYRGELETHESARSRTLGQLVSVRKRLGSEASAGTENLGETTLLLIDTAGCGMHEGETEAGSRFNEGEASIVEKHV 624          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: K3X5G7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5G7_GLOUD)

HSP 1 Score: 207 bits (528), Expect = 5.940e-59
Identity = 135/281 (48.04%), Postives = 171/281 (60.85%), Query Frame = 1
Query:    1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLR-DIEGEVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHAS--KAQDMAAAVMLLLDTTGCDMYEE-------KAGGGS------RRNKGEAEVAVRHV 795
            LLP +V+++ L+A V   +GT IV DIR E+  +  +L    D S           R + R ELK  RKE R RE NVV+E++R  DVV AT VGA +  L+D  FDLVVIDEAAQALE++CWIPILK KR VLAGDH QL PT+KS +AA      SDGL LT+FDR+ R      V +ML +QYRM+  I DW+S+ MY   L++   VA R L  LPH S  +  DM  A +LLLDT GC++ E+        A GGS      + N+GEA V  +HV
Sbjct:  297 LLP-QVLKYCLDAKVEVAEGTEIVNDIRNEMTTMQTQLQKTRDKSV----------RFNLRRELKVNRKEIRQREQNVVQELVRRSDVVFATNVGASSKLLKDTTFDLVVIDEAAQALEASCWIPILKAKRCVLAGDHLQLPPTIKSKSAA------SDGLELTLFDRITRFQSTQNVVKMLKIQYRMHEHISDWSSRAMYDNELQSFDGVARRKLHELPHVSIQEDDDMLNATLLLLDTAGCELEEDGDDDDGVPAKGGSSVLKLSKSNEGEARVVAKHV 560          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A5D6Y5R7_9STRA (AN1-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5R7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.170e-57
Identity = 134/281 (47.69%), Postives = 170/281 (60.50%), Query Frame = 1
Query:    1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRDIEG--EVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQD--MAAAVMLLLDTTGCDMYEEK-------AGGG-----SRRNKGEAEVAVRHV 795
            LLP +V+ H LEA ++  DGT IV DIR E+  +  +L    D  +          R + R +LK+ RKE R RE  VV E+++  DVV AT VGA +  L+D  FDLVVIDEAAQALE+ACW+PILK KR VLAGDHKQL PT+KS  AA      +DGL LT+FDRV R + G   V +ML  QYRM+  I DW+S+ MY G L +   VA R L  LPH + A D  +  A +LLLDT GC + E++        G G     S+ N+GEA V  +HV
Sbjct:  277 LLP-QVLRHCLEAKIAAADGTEIVNDIRKEMVAMQAQLSKTRDKGA----------RFALRRDLKANRKEVRQREHKVVVELVKHSDVVFATNVGAASKLLKDATFDLVVIDEAAQALEAACWVPILKAKRCVLAGDHKQLPPTIKSKAAA------ADGLELTLFDRVTR-LAGTQSVVKMLTTQYRMHARISDWSSRAMYDGALESFEGVATRKLHELPHVTIAADDELLNATLLLLDTAGCGLEEDRPDSESGRGGNGELAQLSKSNEGEARVVAKHV 539          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A7S2LQ57_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQ57_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.170e-56
Identity = 129/279 (46.24%), Postives = 173/279 (62.01%), Query Frame = 1
Query:   16 VVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSL-RDED-------FDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRDIEGE---VCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHAS--------KAQDMAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
            + ++SLE++V   DGT IV+D R E++  +R L      SS         E+R A  E+KSLRKE R+RE+ VV +VLR  +VVLAT VGA +  L R  D       FDLV+IDEAAQALE++CWI +L+GKR VLAGDHKQL PT+KS T  E +    +GLG T+F+R++   E E     +ML+VQYRM++DI +WASK MY G L +  SV  R L  LP  +          + +    ++L+DTTGCDM+E     GSR N+GEA + + HV
Sbjct:   39 IQKYSLESLVQASDGTEIVRDCRNEMNDHLRTLSNPKSRSS---------EKRIAYREMKSLRKEIRSREEKVVGQVLRDSNVVLATNVGAASSVLNRMVDSRGDPIPFDLVIIDEAAQALEASCWISLLRGKRAVLAGDHKQLPPTIKS-TVNEVK----NGLGQTLFERLMTSYEKESSGCSKMLEVQYRMHQDIANWASKAMYHGKLLSHESVKERKLIDLPQVTANTNGGGTSNEGIEHTTLMLIDTTGCDMHETLNEAGSRYNEGEAGIVISHV 303          
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Match: A0A485KRK6_9STRA (Aste57867_10895 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRK6_9STRA)

HSP 1 Score: 202 bits (515), Expect = 5.330e-56
Identity = 128/270 (47.41%), Postives = 167/270 (61.85%), Query Frame = 1
Query:    1 LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQRRLRPME--RRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHSLRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTAAEGRRGDSDGLGLTMFDRVLRDIEG-EVCRMLDVQYRMNRDICDWASKEMYGGLLRADPSVAGRTLPMLPHASKAQD--MAAAVMLLLDTTGCDMYEEKAGGGSRRNKGEAEVAVRHV 795
            LLP +V++H L+A + R +GT I+ DIR E+  L                  +P +  R + R+E K LRKE R RE  VV E+++  DVV AT  GA T  LRD+ FD+V+IDEAAQALE +CWIP+LK KR VLAGDH+QL PTVKS  A   RR      GLT+FDRV+      +V RML  QYRM+ DI DWASK MY G L +  +VA R L  LPH +  +D  +  A +L++DT GC + E+++   S+ N GEA V V+HV
Sbjct:  281 LLP-QVLKHCLDAKIQRAEGTQIIADIRKELAAL------------------KPTKATRFAVRQESKLLRKEIRMREQKVVTEIVQHSDVVFATNAGAATKLLRDQVFDVVIIDEAAQALEVSCWIPLLKAKRCVLAGDHQQLPPTVKSQLAP--RR------GLTLFDRVVDMAHTTDVVRMLSTQYRMHADISDWASKAMYEGKLLSSDAVATRKLQDLPHVASGEDDSLVHATLLIVDTAGCGLDEDESEQMSKSNAGEAGVVVKHV 523          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74180.15111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGH1_9PHAE5.240e-9653.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8K5_ECTSI5.760e-8856.10R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z7I8_9STRA2.790e-7352.45P-loop containing nucleoside triphosphate hydrolas... [more]
W7TRN4_9STRA4.200e-6649.33Dna-binding protein smubp-2 n=1 Tax=Nannochloropsi... [more]
A0A7S4T598_9STRA2.090e-6047.64Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A448ZKX4_9STRA2.840e-5942.81R3H domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
K3X5G7_GLOUD5.940e-5948.04Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y5R7_9STRA2.170e-5747.69AN1-type domain-containing protein n=1 Tax=Pythium... [more]
A0A7S2LQ57_9STRA1.170e-5646.24Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A485KRK6_9STRA5.330e-5647.41Aste57867_10895 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74180contigH-elongata_contig74180:850..2967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.3
Seed ortholog evalue5.8e-77
Seed eggNOG ortholog2880.D7G8K5
Preferred nameIGHMBP2
KEGG koko:K19036,ko:K19783
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ATP-dependent 5'-3' RNA helicase activity
EggNOG OGsCOG1112@1,KOG1803@2759
EC3.6.4.12,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Hectar predicted targeting categoryother localisation
Exons5
Model size801
Cds size801
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74180.15111.1prot_H-elongata_contig74180.15111.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74180 850..2967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.9215126-CDS-H-elongata_contig74180:849..10561622931146.9215126-CDS-H-elongata_contig74180:849..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 850..1056 -
1691679717.667854-CDS-H-elongata_contig74180:849..10561691679717.667854-CDS-H-elongata_contig74180:849..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 850..1056 -
1622931146.9459763-CDS-H-elongata_contig74180:1667..17971622931146.9459763-CDS-H-elongata_contig74180:1667..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 1668..1797 -
1691679717.6784112-CDS-H-elongata_contig74180:1667..17971691679717.6784112-CDS-H-elongata_contig74180:1667..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 1668..1797 -
1622931146.9677372-CDS-H-elongata_contig74180:1857..19731622931146.9677372-CDS-H-elongata_contig74180:1857..1973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 1858..1973 -
1691679717.6861153-CDS-H-elongata_contig74180:1857..19731691679717.6861153-CDS-H-elongata_contig74180:1857..1973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 1858..1973 -
1622931146.9899683-CDS-H-elongata_contig74180:2412..25711622931146.9899683-CDS-H-elongata_contig74180:2412..2571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 2413..2571 -
1691679717.69436-CDS-H-elongata_contig74180:2412..25711691679717.69436-CDS-H-elongata_contig74180:2412..2571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 2413..2571 -
1622931147.013056-CDS-H-elongata_contig74180:2778..29671622931147.013056-CDS-H-elongata_contig74180:2778..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 2779..2967 -
1691679717.7068157-CDS-H-elongata_contig74180:2778..29671691679717.7068157-CDS-H-elongata_contig74180:2778..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74180 2779..2967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74180.15111.1

>prot_H-elongata_contig74180.15111.1 ID=prot_H-elongata_contig74180.15111.1|Name=mRNA_H-elongata_contig74180.15111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
LLPNKVVEHSLEAIVSRHDGTAIVKDIRGEIDVLVRRLFPDADNSSGKQR
RLRPMERRSAREELKSLRKEARAREDNVVREVLRSRDVVLATCVGAGTHS
LRDEDFDLVVIDEAAQALESACWIPILKGKRLVLAGDHKQLAPTVKSLTA
AEGRRGDSDGLGLTMFDRVLRDIEGEVCRMLDVQYRMNRDICDWASKEMY
GGLLRADPSVAGRTLPMLPHASKAQDMAAAVMLLLDTTGCDMYEEKAGGG
SRRNKGEAEVAVRHVV*
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mRNA from alignment at H-elongata_contig74180:850..2967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74180.15111.1 ID=mRNA_H-elongata_contig74180.15111.1|Name=mRNA_H-elongata_contig74180.15111.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2118bp|location=Sequence derived from alignment at H-elongata_contig74180:850..2967- (Himanthalia elongata Himel1 dioecious)
CTTTTGCCCAATAAGGTGGTGGAGCATTCCCTGGAGGCCATTGTGTCGCG ACACGACGGCACAGCCATCGTCAAGGACATCCGAGGGGAGATTGACGTGC TGGTGAGGCGGCTCTTTCCGGACGCCGACAACAGCAGCGGAAAACAGCGG CGTCTTCGCCCGATGGAGAGAAGGAGCGCCAGAGAAGAGGTGGACGTTTC CAGCGGCGGGAAGGAGGCGCGGAAGCGAAGCGAGAGCGCGGGGAACGTGT TTCGCACGTTTTTATCTACGGATAGAAACGCGTTGTGCGCGCGGATGCCG GGCTTCCCTCGGCGGGCTCGTATCGTGCTTCGACGCATGTAAAAATAACC ACTCTCTCGATGTCGGCCTTTGATATTTGAATCACTCTTTGCGCAGTTAA AATCGCTCCGGAAGGAGGCGCGCGCCCGCGAAGACAACGTGGTGCGGGAG GTTTTGAGGTCGAGGGATGTTGTATTGGCCACCTGCGTTGGGGCGGGAAC GCACAGCCTCCGCGACGAGGATTTCGACCTCGTGGTGATCGACGAGGCGG CTCAGGTGAGGGTGGGCACGACAAAGGGGGTGGCGGGGGAGAGGCGAAGG AGGATGTTGCCGGTACCTTGTTTTCTACGCGTTTTGATTTGCCGGCCTTT CGCGTTGCATAGAGATTGGGTGTCTGCGGGCTGCGCTGCACGCGTCGTAA GGGGCATGGGCATTTGCACATCGATCACCAGGCCAAGTTGGTCCCGTGTT GATATTGGATGACTATAACAGAGGCGATCGCCGAGACAACGCGAATTGCA GCCTACTGCTGGGGACGATCCGTGACACCTCGCAATCGCGTGTGCGTTGC GTACGGCAAGCACCCTCTGGACTTAAACGCCTTTGTTTAAATATTTTTTT CGTTCCCCCAGATCCCTCCCTTCCTCCCTTTCCCCCACCGTCTCTTTCTT TCCACGGGAATGTGACGTTTTGCTTGTCGCATCCCCAACGGCAGGCCCTG GAGTCAGCGTGCTGGATACCAATCCTCAAGGGTAAACGTCTCGTCCTAGC TGGGGATCACAAGCAGCTGGCTCCGACAGTGAAGAGCCTCACGGCTGCGG AGGGCAGGCGGTTGACTCCGCCTTCTGTTTCTCTTTATCCGTCCGAGTCG TCTGTCGATGGCGCTGGGAGCGGTGATAGCGATGGACTCGGCCTGACCAT GTTCGATAGGGTGCTGAGAGACATCGAGGGCGAAGTGTGTCGCATGCTGG ATGTGCAATACCGCATGAATCGGGACATCTGTGACTGGGCGTCAAAGGAG GTGCTTGGGTGGTGTGATAAGGCGGTGTTTTTTTATCTCTTCTTTCAACG TCTATTTTTAATGGAGTTATCATTTTTTCGTGTCATACTTCTACAGTATG TCCCTGCCCTGTCGAAGAACGGAAGATTTTGGGGCTCAGGAGAGATGGGA GTCTGTATTGCCTGGAGAACCGTATCGCCTGGAGTACTGGTTTGATGATG CGAGACCGATTTGTTAAGAAGGCCAGCTCCTCAGAGTTGAGATCTCCTTT CATAAGTATTGGCTTCGGGACAGCTGAGCTTCTATTATATAAGAGAGACG GACGGAGGCGAATTAGTGGGGCGTCCGTTCTCGAGAACAGCCGATGCACG AAAACTTCATACCAAAATGAAGACTCCAGGCGTAGATCGCGGCCGTTGCT TAATTTACCACTGATGGCTTCTCTACTTACTTCGATCAATAACTGTTTTA CAAGTAGCGTCGAGGGTGCTTGGGAGATTGCTTGAGATTCCGATGTGGAC TCACATCTTCCCCTCTCCAATATTCTCCGATCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCGACCCCTCCCGGTACCCTTGCTTTCGCT AAACGACAAAGATGTACGGGGGCCTCCTCCGCGCCGACCCGTCCGTCGCC GGGAGAACGCTGCCGATGCTGCCGCACGCCTCCAAAGCTCAGGACATGGC CGCGGCAGTCATGCTGCTGCTGGACACTACGGGGTGCGACATGTACGAAG AGAAAGCTGGCGGCGGTAGCCGGAGAAACAAGGGGGAGGCCGAGGTGGCT GTGCGGCACGTCGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig74180:850..2967-

>mRNA_H-elongata_contig74180.15111.1 ID=mRNA_H-elongata_contig74180.15111.1|Name=mRNA_H-elongata_contig74180.15111.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig74180:850..2967- (Himanthalia elongata Himel1 dioecious)
CTTTTGCCCAATAAGGTGGTGGAGCATTCCCTGGAGGCCATTGTGTCGCG
ACACGACGGCACAGCCATCGTCAAGGACATCCGAGGGGAGATTGACGTGC
TGGTGAGGCGGCTCTTTCCGGACGCCGACAACAGCAGCGGAAAACAGCGG
CGTCTTCGCCCGATGGAGAGAAGGAGCGCCAGAGAAGAGCTTTTGCCCAA
TAAGGTGGTGGAGCATTCCCTGGAGGCCATTGTGTCGCGACACGACGGCA
CAGCCATCGTCAAGGACATCCGAGGGGAGATTGACGTGCTGGTGAGGCGG
CTCTTTCCGGACGCCGACAACAGCAGCGGAAAACAGCGGCGTCTTCGCCC
GATGGAGAGAAGGAGCGCCAGAGAAGAGTTAAAATCGCTCCGGAAGGAGG
CGCGCGCCCGCGAAGACAACGTGGTGCGGGAGGTTTTGAGGTCGAGGGAT
GTTGTATTGGCCACCTGCGTTGGGGCGGGAACGCACAGCCTCCGCGACGA
GGATTTCGACCTCGTGGTGATCGACGAGGCGGCTCAGTTAAAATCGCTCC
GGAAGGAGGCGCGCGCCCGCGAAGACAACGTGGTGCGGGAGGTTTTGAGG
TCGAGGGATGTTGTATTGGCCACCTGCGTTGGGGCGGGAACGCACAGCCT
CCGCGACGAGGATTTCGACCTCGTGGTGATCGACGAGGCGGCTCAGGCCC
TGGAGTCAGCGTGCTGGATACCAATCCTCAAGGGTAAACGTCTCGTCCTA
GCTGGGGATCACAAGCAGCTGGCTCCGACAGTGAAGAGCCTCACGGCTGC
GGAGGGCAGGCGGCCCTGGAGTCAGCGTGCTGGATACCAATCCTCAAGGG
TAAACGTCTCGTCCTAGCTGGGGATCACAAGCAGCTGGCTCCGACAGTGA
AGAGCCTCACGGCTGCGGAGGGCAGGCGCGGTGATAGCGATGGACTCGGC
CTGACCATGTTCGATAGGGTGCTGAGAGACATCGAGGGCGAAGTGTGTCG
CATGCTGGATGTGCAATACCGCATGAATCGGGACATCTGTGACTGGGCGT
CAAAGGAGCGGTGATAGCGATGGACTCGGCCTGACCATGTTCGATAGGGT
GCTGAGAGACATCGAGGGCGAAGTGTGTCGCATGCTGGATGTGCAATACC
GCATGAATCGGGACATCTGTGACTGGGCGTCAAAGGAGATGTACGGGGGC
CTCCTCCGCGCCGACCCGTCCGTCGCCGGGAGAACGCTGCCGATGCTGCC
GCACGCCTCCAAAGCTCAGGACATGGCCGCGGCAGTCATGCTGCTGCTGG
ACACTACGGGGTGCGACATGTACGAAGAGAAAGCTGGCGGCGGTAGCCGG
AGAAACAAGGGGGAGGCCGAGGTGGCTGTGCGGCACGTCGTGTGAATGTA
CGGGGGCCTCCTCCGCGCCGACCCGTCCGTCGCCGGGAGAACGCTGCCGA
TGCTGCCGCACGCCTCCAAAGCTCAGGACATGGCCGCGGCAGTCATGCTG
CTGCTGGACACTACGGGGTGCGACATGTACGAAGAGAAAGCTGGCGGCGG
TAGCCGGAGAAACAAGGGGGAGGCCGAGGTGGCTGTGCGGCACGTCGTGT
GA
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