mRNA_H-elongata_contig74130.15106.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74130.15106.1
Unique NamemRNA_H-elongata_contig74130.15106.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 3.860e-63
Identity = 129/332 (38.86%), Postives = 188/332 (56.63%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSP 999
            H D+  A++++D++E++++ LPE        +  L K++YGL  A   W  ++       GF    AD CVFR I  G VV  +VV+VDD+      +R + Q  RDL +  P+K+LG+  +Y GC   RD + GTLK +Q  Y + +    GV     +P   G K  S+ D    D EV      P+RE++G+LMW AT TRPDI+ A   +A++  +P   HWRA    L Y+ RT DLGIT+ R    G  +  ++DADY +    RRSVS G V+  GG IS FS  QK    +++E+EYV+LA+++ E+ FLRQV  FM P++  P
Sbjct:   37 HFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ---DEEVVSW---PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMP 360          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 5.530e-63
Identity = 130/333 (39.04%), Postives = 191/333 (57.36%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSPS 1002
            H DV  AY  A ++EE++++LP    D   ++    +A+YGL  +G  W  +  D     GF+  +ADPCVFR ++   VV +IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD   GTL+ +Q  YI ++V R  V  TS +P+  G     K +        +E  + P RE +G++MW +T +RPD+SFA   +A+    P  +HW A QK L YL  TRDLGITY R  G G  L+ ++DA Y    D RRSVS  A  + G  +S  S  Q + + +S+E+EY+A  E V E  F+R V +F+ P+++  S
Sbjct:  847 HWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSS 1168          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 6.570e-63
Identity = 130/333 (39.04%), Postives = 191/333 (57.36%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSPS 1002
            H DV  AY  A ++EE++++LP    D   ++    +A+YGL  +G  W  +  D     GF+  +ADPCVFR ++   VV +IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD   GTL+ +Q  YI ++V R  V  TS +P+  G     K +        +E  + P RE +G++MW +T +RPD+SFA   +A+    P  +HW A QK L YL  TRDLGITY R  G G  L+ ++DA Y    D RRSVS  A  + G  +S  S  Q + + +S+E+EY+A  E V E  F+R V +F+ P+++  S
Sbjct: 1226 HWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSS 1547          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 6.630e-63
Identity = 130/333 (39.04%), Postives = 191/333 (57.36%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSPS 1002
            H DV  AY  A ++EE++++LP    D   ++    +A+YGL  +G  W  +  D     GF+  +ADPCVFR ++   VV +IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD   GTL+ +Q  YI ++V R  V  TS +P+  G     K +        +E  + P RE +G++MW +T +RPD+SFA   +A+    P  +HW A QK L YL  TRDLGITY R  G G  L+ ++DA Y    D RRSVS  A  + G  +S  S  Q + + +S+E+EY+A  E V E  F+R V +F+ P+++  S
Sbjct: 1246 HWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSS 1567          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 6.700e-63
Identity = 130/333 (39.04%), Postives = 191/333 (57.36%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSPS 1002
            H DV  AY  A ++EE++++LP    D   ++    +A+YGL  +G  W  +  D     GF+  +ADPCVFR ++   VV +IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD   GTL+ +Q  YI ++V R  V  TS +P+  G     K +        +E  + P RE +G++MW +T +RPD+SFA   +A+    P  +HW A QK L YL  TRDLGITY R  G G  L+ ++DA Y    D RRSVS  A  + G  +S  S  Q + + +S+E+EY+A  E V E  F+R V +F+ P+++  S
Sbjct: 1389 HWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSS 1710          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.800e-62
Identity = 129/333 (38.74%), Postives = 190/333 (57.06%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSPS 1002
            H DV  AY  A ++EE++++LP    D   ++    +A+YGL  +G  W  +  D     GF+  +ADPCVFR ++   VV +IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD + GTL+ +Q  YI ++V R  V  TS +P+  G     K +  +         + P RE VG++MW +T +RPD+SFA   +A+    P  +HW A QK L YL  TRDLGITY R  G G  L+ ++DA Y    D RRSVS  A  + G  +S  S  + + + +S+E+EY+A  E V E  F+R V +F+ P++   S
Sbjct:  438 HWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGG-------EWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSS 759          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.490e-61
Identity = 124/332 (37.35%), Postives = 182/332 (54.82%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSP 999
            H DV+ A++++++EE++Y+ LP+        +  L K++YGL  A   W   ++      GF+   AD CVFR I  G VV ++VV+VDD+      +R ++    DL    P+K+LGE  +Y GC   R++  G L  +Q  +   +    GV     VP ++G K  S  D+ +   E       P+RE+VG+LMW AT TRPDI+ A   +A++  +P   HW AA   L Y  RT   GI++ R   EG  L  + DAD+ +    RRSVS G V   GGA+S FS  QK    +++E+EYVAL ++V E+ FLRQ+  FM PQ   P
Sbjct:   61 HFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMP 384          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.740e-61
Identity = 129/332 (38.86%), Postives = 188/332 (56.63%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSP 999
            H D+  A++++D++E++++ LPE        +  L K++YGL  A   W  ++       GF    AD CVFR I  G VV  +VV+VDD+      +R + Q  RDL +  P+K+LG+  +Y GC   RD + GTLK +Q  Y + +    GV     +P   G K  S+ D    D EV      P+RE++G+LMW AT TRPDI+ A   +A++  +P   HWRA    L Y+ RT DLGIT+ R    G  +  ++DADY +    RRSVS G V+  GG IS FS  QK    +++E+EYV+LA+++ E+ FLRQV  FM P++  P
Sbjct:  211 HFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ---DEEVVSW---PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMP 534          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 6.760e-60
Identity = 128/340 (37.65%), Postives = 189/340 (55.59%), Query Frame = 1
Query:    4 HLDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKTSIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSFSLVQKVTAAASS-------ESEYVALAEMVNELRFLRQVKAFMTPQSTSPS 1002
            H DV  AY  A ++EE++++LP    D   ++    +A+YGL  +G  W  +  D     GF+  +ADPCVFR ++   VV +IV+YVDD+LVA + + D E+ +  L   FP K+L E  ++ GC I RD   GTL+ +Q  YI ++V R  V  TS +P++ G     K D        ++  + P RE +G++MW +T +RPD+SFA   +A+    P  +HW A QK L YL  TRDLGITY R  G G  L+ ++DA Y    D RRSVS  A  + G  +S  S  Q + + +S+       E+EY    E V E  F+R V +F+ P+++  S
Sbjct:  401 HWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDD-------EKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSS 729          
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.670e-59
Identity = 120/320 (37.50%), Postives = 186/320 (58.13%), Query Frame = 1
Query:    7 LDVDMAYLKADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLLW*KNVRDRARGEGFQIFQADPCVFRWILHGTVVGVIVVYVDDLLVASATKRDEEQSVRDLCSCFPIKDLGEASYYLGCHITRDRNVGTLKFNQHQYIQTVVGRLGVTKT-SIVPSAAGGKTFSKSDSPQTDAEVKEMRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKALQYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAGGAISSF-SLVQKVTAAASSESEYVALAEMVNELRFLR 960
            LD D A+  +D++E++++E+P    ++   +  L KA+YGL  A   W + +       GF+   AD CV+  +     V V  +YVDD+++A+ T  +  +    L S F +K+LGEA + LG  I  DR  GTL   Q +Y+  VV R       ++V     G   SK+ SP TDAE ++MR  PY+ ++G+L++  T TRPD+++   QL++F +NPG +HW+AA + L+YL  T+D GI Y    G+   L  + DAD+G+ LD RRSVS G ++M GGA   F S  Q+  A +S+E+EY+AL+    E+ + R
Sbjct:   21 LDADTAFPNSDLKEQVFMEVPYGITNAANMMCKLDKAIYGLKQAASAWHQTIHAVFVKIGFRSCGADKCVYVKVSKDNYVYVC-LYVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNGKA-VLEVYTDADWGSNLDGRRSVS-GIMMMIGGAPGVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTR 337          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74130.15106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE3.860e-6338.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE5.530e-6339.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE6.570e-6339.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE6.630e-6339.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE6.700e-6339.04Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQN6_9PHAE1.800e-6238.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE1.490e-6137.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.740e-6138.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE6.760e-6037.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3J8V8_9STRA1.670e-5937.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74130contigH-elongata_contig74130:1958..3058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1103
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.4435596-CDS-H-elongata_contig74130:1957..25061622931146.4435596-CDS-H-elongata_contig74130:1957..2506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74130 1958..2506 -
1691679717.5206735-CDS-H-elongata_contig74130:1957..25061691679717.5206735-CDS-H-elongata_contig74130:1957..2506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74130 1958..2506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.4639926-UTR-H-elongata_contig74130:2506..30581622931146.4639926-UTR-H-elongata_contig74130:2506..3058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74130 2507..3058 -
1691679717.530517-UTR-H-elongata_contig74130:2506..30581691679717.530517-UTR-H-elongata_contig74130:2506..3058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74130 2507..3058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74130.15106.1prot_H-elongata_contig74130.15106.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74130 1958..2506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74130.15106.1

>prot_H-elongata_contig74130.15106.1 ID=prot_H-elongata_contig74130.15106.1|Name=mRNA_H-elongata_contig74130.15106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp
MRQIPYREIVGTLMWAATMTRPDISFAAHQLAKFNDNPGPKHWRAAQKAL
QYLWRTRDLGITYGREPGEGRKLSAWIDADYGTCLDTRRSVSVGAVIMAG
GAISSFSLVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPQSTSPS
RYTRTTKAQSRWRKTASTVDERGTWTSNITLSA
back to top

mRNA from alignment at H-elongata_contig74130:1958..3058-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74130.15106.1 ID=mRNA_H-elongata_contig74130.15106.1|Name=mRNA_H-elongata_contig74130.15106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-elongata_contig74130:1958..3058- (Himanthalia elongata Himel1 dioecious)
TGGCATCTGGACGTCGACATGGCCTACCTGAAGGCCGATGTGGAAGAGGA GATCTATGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCG GCCTACTAAGGAAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGTGG TAAAAAAACGTTCGGGATCGAGCTCGAGGCGAAGGGTTTCAGATATTTCA AGCCGACCCATGCGTGTTCCGGTGGATTCTCCACGGGACAGTGGTAGGTG TCATCGTGGTTTACGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACGC GACGAGGAGCAATCGGTGAGGGACCTGTGCTCCTGTTTCCCGATCAAGGA TCTAGGAGAGGCTTCATATTACCTGGGATGCCACATCACGCGGGACCGGA ACGTCGGGACACTGAAGTTCAACCAGCATCAGTACATACAGACTGTGGTG GGACGTTTGGGCGTGACGAAGACCAGCATCGTCCCGTCTGCGGCAGGGGG GAAAACCTTTTCGAAATCAGACAGCCCACAGACGGACGCAGAGGTTAAAG AAATGCGCCAGATTCCCTACCGAGAAATCGTTGGAACCCTAATGTGGGCA GCGACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGCGAA ATTCAATGACAACCCGGGACCGAAACACTGGAGGGCAGCCCAGAAAGCGC TGCAATATTTATGGCGCACTCGGGACCTCGGGATCACTTACGGAAGGGAA CCGGGGGAGGGGAGAAAGTTATCAGCGTGGATCGACGCAGACTACGGCAC CTGCCTGGACACGCGTCGCTCAGTGTCGGTAGGGGCGGTGATAATGGCTG GCGGGGCCATCAGTTCGTTCTCACTTGTGCAAAAGGTAACGGCGGCGGCG TCGTCCGAATCGGAATACGTCGCGCTGGCCGAGATGGTAAACGAGTTGCG TTTCCTACGACAAGTCAAGGCGTTCATGACTCCCCAATCGACGTCGCCAT CAAGATACACGAGGACAACGAAGGCGCAATCAAGATGGCGAAAAACTGCT TCAACAGTCGACGAACGAGGCACGTGGACATCAAACATCACATTGTCCGC G
back to top

Coding sequence (CDS) from alignment at H-elongata_contig74130:1958..3058-

>mRNA_H-elongata_contig74130.15106.1 ID=mRNA_H-elongata_contig74130.15106.1|Name=mRNA_H-elongata_contig74130.15106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig74130:1958..3058- (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATTCCCTACCGAGAAATCGTTGGAACCCTAATGTGGGCAGC
GACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGCGAAAT
TCAATGACAACCCGGGACCGAAACACTGGAGGGCAGCCCAGAAAGCGCTG
CAATATTTATGGCGCACTCGGGACCTCGGGATCACTTACGGAAGGGAACC
GGGGGAGGGGAGAAAGTTATCAGCGTGGATCGACGCAGACTACGGCACCT
GCCTGGACACGCGTCGCTCAGTGTCGGTAGGGGCGGTGATAATGGCTGGC
GGGGCCATCAGTTCGTTCTCACTTGTGCAAAAGGTAACGGCGGCGGCGTC
GTCCGAATCGGAATACGTCGCGCTGGCCGAGATGGTAAACGAGTTGCGTT
TCCTACGACAAGTCAAGGCGTTCATGACTCCCCAATCGACGTCGCCATCA
AGATACACGAGGACAACGAAGGCGCAATCAAGATGGCGAAAAACTGCTTC
AACAGTCGACGAACGAGGCACGTGGACATCAAACATCACATTGTCCGCGA
TGCGCCAGATTCCCTACCGAGAAATCGTTGGAACCCTAATGTGGGCAGCG
ACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGCGAAATT
CAATGACAACCCGGGACCGAAACACTGGAGGGCAGCCCAGAAAGCGCTGC
AATATTTATGGCGCACTCGGGACCTCGGGATCACTTACGGAAGGGAACCG
GGGGAGGGGAGAAAGTTATCAGCGTGGATCGACGCAGACTACGGCACCTG
CCTGGACACGCGTCGCTCAGTGTCGGTAGGGGCGGTGATAATGGCTGGCG
GGGCCATCAGTTCGTTCTCACTTGTGCAAAAGGTAACGGCGGCGGCGTCG
TCCGAATCGGAATACGTCGCGCTGGCCGAGATGGTAAACGAGTTGCGTTT
CCTACGACAAGTCAAGGCGTTCATGACTCCCCAATCGACGTCGCCATCAA
GATACACGAGGACAACGAAGGCGCAATCAAGATGGCGAAAAACTGCTTCA
ACAGTCGACGAACGAGGCACGTGGACATCAAACATCACATTGTCCGCG
back to top