mRNA_H-elongata_contig74093.15104.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74093.15104.1
Unique NamemRNA_H-elongata_contig74093.15104.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: A0A6H5KPD3_9PHAE (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPD3_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 1.310e-120
Identity = 181/228 (79.39%), Postives = 198/228 (86.84%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKT-SFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYRSPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTVKKYVVTIG 681
            GMLPVAYGMAA GGTGL VAPALLA FG++SAYTM+S+GRA +RTKRWSF  LW +LVGK +AWV+E+ MALMTFGCCIFY AFAGDLFSALA T S LP VLK+RAVDL +L L PLLPLCLMKNL+ALQYTSF GV+SILYTV FV+KRSLDGTYSEGG FF  ID ++RSPVP PW  VKLWRVGPGL TLMNMSCVAFMCHYNGVKYYEEL+ RT KKY VTIG
Sbjct:  148 GMLPVAYGMAAVGGTGLAVAPALLASFGIISAYTMISVGRACQRTKRWSFSGLWTDLVGKRSAWVVELAMALMTFGCCIFYLAFAGDLFSALAGTVSSLPEVLKKRAVDLVILGLCPLLPLCLMKNLSALQYTSFVGVVSILYTVIFVVKRSLDGTYSEGGEFFNTIDARFRSPVPSPWGVVKLWRVGPGLVTLMNMSCVAFMCHYNGVKYYEELEDRTEKKYAVTIG 375          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: A0A835YIC2_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIC2_9STRA)

HSP 1 Score: 299 bits (766), Expect = 2.300e-97
Identity = 148/228 (64.91%), Postives = 182/228 (79.82%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKTS-FLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYRSPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTVKKYVVTIG 681
            GMLPVA+G+AA GGTGL+ A +++AVFG++SAYT+VSLGRA++ T  ++F  LW  L+   +AWVIEV  A+MTFGCCIFYSAF GDLFS+LA+ S  +PA LK R   L  L +FPLLPLCL+KNL+ALQYTS  G+ S+LY+V  V+KRSLDGTY+ GG F+E ID+KYRSP   PW +V LWRVGPG  TLMNM+CVAFM HYNGVKYYEEL+HRTV++Y   IG
Sbjct:   18 GMLPVAFGIAAGGGTGLLTATSIIAVFGLISAYTLVSLGRAAQLTGEYTFSGLWGTLISPGSAWVIEVAFAVMTFGCCIFYSAFIGDLFSSLAQASDIVPAFLKPRWAVLCALGVFPLLPLCLLKNLSALQYTSMGGLASVLYSVGMVVKRSLDGTYAAGGEFYEGIDLKYRSPQADPWASVGLWRVGPGTVTLMNMACVAFMAHYNGVKYYEELEHRTVRRYTKAIG 245          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: A0A4D9DBF3_9STRA (Aa_trans domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBF3_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.150e-72
Identity = 121/227 (53.30%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKTSFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYRSPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTVKKYVVTIG 681
            GMLP+A+GMA+ GGTGLV A +LL +FG +SAYT++S+ RA E T  +SFR +W+  +   TAW+I+  +  + FGCCIFYSAF GDL +ALA+    PAVL +R + L  L +FPL PLCLMKNL+ALQY+S  GV  ILYT +FV+KR  DG+Y   G F   ID  YR   P      KL+R+GPG  +LMNM+CVAF  HYNG+ YY ELK R + +Y   +G
Sbjct:   65 GMLPLAFGMASEGGTGLVPALSLLVLFGSLSAYTLISIARACEATGEYSFRGIWSRTLHPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPAVLHKRWLCLVALHIFPLWPLCLMKNLSALQYSSIVGVFGILYTTAFVVKRQCDGSYGPSGHFHALIDAVYRPQTPSYSAFEKLFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRNLSRYSGAVG 291          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: W7TM90_9STRA (Pentatricopeptide repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM90_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.790e-68
Identity = 121/227 (53.30%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKTSFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYRSPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTVKKYVVTIG 681
            GMLP+A+GMA+ GGTGLV A +LL +FG +SAYT++S+ RA E T  +SFR +W+  +   TAW+I+  +  + FGCCIFYSAF GDL +ALA+    PAVL +R + L  L +FPL PLCLMKNL+ALQY+S  GV  ILYT +FV+KR  DG+Y   G F   ID  YR   P      KL+R+GPG  +LMNM+CVAF  HYNG+ YY ELK R + +Y   +G
Sbjct: 1164 GMLPLAFGMASEGGTGLVPALSLLVLFGSLSAYTLISIARACEATGEYSFRGIWSRTLHPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPAVLHKRWLCLVALHIFPLWPLCLMKNLSALQYSSIVGVFGILYTTAFVVKRQCDGSYGPSGHFHALIDAVYRPQTPSYSAFEKLFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRNLSRYSGAVG 1390          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: A0A7S3XLX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLX7_HETAK)

HSP 1 Score: 222 bits (565), Expect = 6.430e-66
Identity = 120/229 (52.40%), Postives = 156/229 (68.12%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKTSFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYRSPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTVKKY--VVTIG 681
            GMLP+A+G+AA GGTGL  A  LLA F  +SAYT+VSLGRA++ T++ +   +WAE VG  + WV +  MAL+ +GCC+FYSAF GD+F ALA  + LPA L++R + L  LSLFP+LPLCL+++L+AL  T+  GV++I YTV FVI RSLDG+Y  GG F  A+    R            +  GPG  TL+ M+CVAF+CHYNGV YY EL  RTV+ Y  V T G
Sbjct:  166 GMLPLAFGIAAGGGTGLGTAAGLLAGFAALSAYTLVSLGRAAQATQQATLSGVWAETVGPQSTWVPDGAMALLCYGCCVFYSAFVGDIFGALASAAGLPAALRQRWLVLLALSLFPILPLCLLRDLSALSATNVGGVLAIAYTVGFVIYRSLDGSYQPGGAFHLAMKAALRPDHGAGQPA--FFEAGPGTLTLLTMACVAFLCHYNGVGYYVELNRRTVRNYAKVATTG 392          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: A0A7S1UC63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC63_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.030e-62
Identity = 119/233 (51.07%), Postives = 152/233 (65.24%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKTSFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKY------RSPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTVKKYVVTIG 681
            GML +A+GMAA GGTG V A ALLA FG VS YTM SL RASE T++ S   +W +LVG+ +A  +E  + L+ +GCC+FY+AF GDLF +L+    LP    +R   L  LS  PLLPLCL+KNL+ L Y+S  G + ILYT  FV KRS DG+Y EG  FFEA+D KY      ++        +   R+G G  TL NM+CVAFM HYNG+KYYEEL+ RT ++Y   +G
Sbjct:   21 GMLMLAFGMAAHGGTGAVPAVALLAGFGAVSVYTMWSLARASEETQQASLMGVWTDLVGERSAVYVEGIVTLLCYGCCVFYAAFIGDLFHSLSMRVGLPF---KRFQVLGGLSAVPLLPLCLLKNLSVLGYSSVVGFLGILYTAFFVAKRSGDGSYMEGAPFFEALDDKYLPGFGSKAARAAGGAALDPLRIGAGTVTLANMACVAFMAHYNGIKYYEELEDRTPRRYAGVMG 250          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: A0A7S2V5G6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5G6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.030e-56
Identity = 101/214 (47.20%), Postives = 141/214 (65.89%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKTSFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYRSPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEEL 642
            G++P++YG+AA GGTGL ++  LL VFG +S YTM+ +GRA E T   S R +W   VGK T WV++  ++L+ FGCC+F+SAF GDLF+ALA     P+ L+ R + L L SL  +LPLCLM++L+ L+YTSF GV ++LYT+ FV+ R   G Y++GGR F+++    +   P     V LWR GPG    +N+ CV FM HYN   Y+  L
Sbjct:  123 GIMPLSYGIAAGGGTGLALSTVLLVVFGTISTYTMLCIGRACEMTGEKSLRGVWEVAVGKSTGWVVDACVSLLCFGCCVFFSAFIGDLFAALAAALQFPSQLQVRWLVLGLTSLAVILPLCLMEDLSTLKYTSFGGVGALLYTLVFVLVRQRGGAYAQGGRLFDSMPPHLQ---PALSKAVPLWRFGPGTLLFLNLVCVGFMAHYNAANYHASL 333          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: B7FRQ8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRQ8_PHATC)

HSP 1 Score: 184 bits (468), Expect = 7.230e-52
Identity = 111/243 (45.68%), Postives = 149/243 (61.32%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRAS---------ERTKRWSFRSLWAELV--GKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAK-TSFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYRSPVPMP------------WDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTV 657
            GMLP+AYGMAA GGTG V+A A+L VFG +S Y++VS  RA+         E     S  ++W   V  GK T ++ +V    +T GC +FYSAF GD+F +L      LP+VL++R   L LL   P+LPLCL K+L+AL+Y+S  G++ I YTV FV KR +DG+Y+EGG++F+ +  K++ P P+                +     G GL TLMNM CVA+ CHYN VKYY ELK RTV
Sbjct:   97 GMLPIAYGMAAAGGTGPVLATAVLVVFGALSWYSLVSFARAADVVLVQSKEEHAAGESLSAVWERTVPNGKLTTYIPDVGCVFLTVGCLLFYSAFIGDIFGSLVSGVKGLPSVLQKRWPVLLLLHAVPILPLCLKKDLSALKYSSMTGLLGIFYTVFFVGKRLVDGSYAEGGKYFDLMATKFQ-PAPLANFPHTQSGVLGYLADIPSMYAGKGLFTLMNMCCVAYACHYNAVKYYMELKDRTV 338          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: A0A1Z5K500_FISSO (Aa_trans domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K500_FISSO)

HSP 1 Score: 173 bits (439), Expect = 7.050e-48
Identity = 101/233 (43.35%), Postives = 144/233 (61.80%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERT--------KRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAK-TSFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYR-----SPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTV 657
            GMLP+AYGMAA GGTG V+A  +L VFG +S Y++V+  RA++ T           S   +W   VG  T ++ ++    +T GC +FYSAF GD+F +L      LP +L++R   L LL   P+LPLCL ++L++LQY+S  G++ I+YTV FV KR +DG+Y+ GG+F+  +          + V      +KL++   GL  LMNM CVA+ CHYN VKY+ ELK+RTV
Sbjct:   78 GMLPIAYGMAAGGGTGPVLATLILLVFGFLSWYSLVTWARAADATLCREKPVVMAESLSEVWERTVGPQTKFIPDLGCVALTLGCLLFYSAFLGDIFGSLVSGLPSLPPILRKRWTVLLLLHAVPVLPLCLAEDLSSLQYSSMTGLLGIIYTVFFVGKRLVDGSYAAGGKFYNLMPNHLHPSGQGTGVLGLVSELKLFQAKRGLLVLMNMCCVAYACHYNSVKYFMELKNRTV 310          
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Match: A0A4D9D223_9STRA (Aa_trans domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D223_9STRA)

HSP 1 Score: 161 bits (407), Expect = 6.230e-44
Identity = 90/222 (40.54%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    1 GMLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFRSLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKTSFLPAVLKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRSLDGTYSEGGRFFEAIDVKYRSPVPMPWDTVKLWRVGPGLATLMNMSCVAFMCHYNGVKYYEELKHRTVKKY 666
            GML +  G+AA  GTG + A  LLA   V SAYT V +GR+ E T+  SF+  W+  VG   AWV++  +  + F  CI Y+ F GD F++L K + LPA L  R   +  +++  L PL L+K+L+ALQY+S+ G+ +++YTV F+  R  DG+Y++GG FF AI  + R P P  +     W++  G A L +M   ++M H N VK+Y EL+ R+V+++
Sbjct:   12 GMLALPAGLAAGAGTGYIPAYLLLAFSAVSSAYTFVLVGRSVEATRSRSFKEAWSRTVGPAQAWVVDYAITALAFAVCIVYACFVGDTFTSLLKGAGLPAWLSSREASILAVTITVLFPLTLLKDLSALQYSSYVGIAAVIYTVLFMAWRFWDGSYAKGGAFFAAIAPELR-PRPAHFGP---WKMSVGTAILFSMFSTSYMAHTNAVKFYNELEGRSVRRF 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74093.15104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPD3_9PHAE1.310e-12079.39Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YIC2_9STRA2.300e-9764.91Transmembrane amino acid transporter protein-domai... [more]
A0A4D9DBF3_9STRA1.150e-7253.30Aa_trans domain-containing protein n=1 Tax=Nannoch... [more]
W7TM90_9STRA1.790e-6853.30Pentatricopeptide repeat containing protein n=1 Ta... [more]
A0A7S3XLX7_HETAK6.430e-6652.40Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1UC63_9STRA2.030e-6251.07Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2V5G6_9STRA1.030e-5647.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B7FRQ8_PHATC7.230e-5245.68Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5K500_FISSO7.050e-4843.35Aa_trans domain-containing protein n=2 Tax=Fistuli... [more]
A0A4D9D223_9STRA6.230e-4440.54Aa_trans domain-containing protein n=2 Tax=Monodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74093contigH-elongata_contig74093:96..2832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score361.7
Seed ortholog evalue2.5e-97
Seed eggNOG ortholog2880.D8LPT6
KEGG koko:K13576
KEGG TC2.A.18.6.2,2.A.18.6.3
KEGG Pathwayko04724,ko04727,ko04964,map04724,map04727,map04964
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal peptide
Exons4
Model size684
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74093.15104.1prot_H-elongata_contig74093.15104.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74093 96..2829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.218542-CDS-H-elongata_contig74093:95..2871622931146.218542-CDS-H-elongata_contig74093:95..287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74093 96..287 -
1691679717.4497662-CDS-H-elongata_contig74093:95..2871691679717.4497662-CDS-H-elongata_contig74093:95..287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74093 96..287 -
1622931146.2330644-CDS-H-elongata_contig74093:1156..12581622931146.2330644-CDS-H-elongata_contig74093:1156..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74093 1157..1258 -
1691679717.4645371-CDS-H-elongata_contig74093:1156..12581691679717.4645371-CDS-H-elongata_contig74093:1156..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74093 1157..1258 -
1622931146.2495975-CDS-H-elongata_contig74093:1973..21711622931146.2495975-CDS-H-elongata_contig74093:1973..2171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74093 1974..2171 -
1691679717.4732227-CDS-H-elongata_contig74093:1973..21711691679717.4732227-CDS-H-elongata_contig74093:1973..2171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74093 1974..2171 -
1622931146.2675045-CDS-H-elongata_contig74093:2640..28291622931146.2675045-CDS-H-elongata_contig74093:2640..2829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74093 2641..2829 -
1691679717.4813607-CDS-H-elongata_contig74093:2640..28291691679717.4813607-CDS-H-elongata_contig74093:2640..2829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74093 2641..2829 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.2849705-UTR-H-elongata_contig74093:2829..28321622931146.2849705-UTR-H-elongata_contig74093:2829..2832Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74093 2830..2832 -
1691679717.489546-UTR-H-elongata_contig74093:2829..28321691679717.489546-UTR-H-elongata_contig74093:2829..2832Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74093 2830..2832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74093.15104.1

>prot_H-elongata_contig74093.15104.1 ID=prot_H-elongata_contig74093.15104.1|Name=mRNA_H-elongata_contig74093.15104.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MLPVAYGMAAFGGTGLVVAPALLAVFGVVSAYTMVSLGRASERTKRWSFR
SLWAELVGKDTAWVIEVTMALMTFGCCIFYSAFAGDLFSALAKTSFLPAV
LKRRAVDLSLLSLFPLLPLCLMKNLNALQYTSFFGVISILYTVSFVIKRS
LDGTYSEGGRFFEAIDVKYRSPVPMPWDTVKLWRVGPGLATLMNMSCVAF
MCHYNGVKYYEELKHRTVKKYVVTIG*
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mRNA from alignment at H-elongata_contig74093:96..2832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74093.15104.1 ID=mRNA_H-elongata_contig74093.15104.1|Name=mRNA_H-elongata_contig74093.15104.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2737bp|location=Sequence derived from alignment at H-elongata_contig74093:96..2832- (Himanthalia elongata Himel1 dioecious)
GGCATGCTCCCGGTGGCGTACGGCATGGCCGCTTTCGGGGGTACGGGCCT TGTTGTGGCTCCTGCGCTCCTCGCGGTATTTGGGGTCGTCTCCGCGTACA CCATGGTCAGCCTTGGTAGGGCCTCAGAGCGCACCAAGCGTTGGTCCTTT AGGAGTCTCTGGGCTGAACTAGTCGGGAAGGATACGGCGTGGGTGAGTTG AGTCTAGGGTTGGGAGCGTTCGGCGGGGGAAGAGGGGGATAAGCTTCGAA CCTGCAAATATTTTCCCCCGGTTGTTGTACAGTAGAGCTTGAGACAATAC GCTTGGAAGGAGGCAAGGTGATGCTACCGCGGACCTCTCGCAAAGGTTGT CGTGAAAAGTAGCAGGGAAAGATTCGCGCGGCGCTTGCCGCCTGCGTAAT GTTGGCCCGACGTAGGCCACATGGGCGTGCTCCTTCCCCTCTCGCTACTT ATAATTGCTGCCATTGCTTCGGTAGAAGCTTCGGGTGAAGGAACCCAATC GAACGCGGGCGCAGCCTCCTCGTTGTTGGTTCGTTTTTGTTTTGTTTTGT GTTTTATCTCGCCCGAGTCCGCCCACGACCCGTGCGCTACCACCGGTGCT ACATCACACGAAGAATCGCTTCACTACTATATTACATATGTTTTTTTTTC CTCACCCGCAGGTTATCGAAGTAACCATGGCGCTCATGACCTTCGGGTGC TGCATCTTCTACTCGGCGTTCGCCGGCGATTTGTTTTCAGCGCTTGCCAA GACCTCCTTTCTCCCCGCCGTCCTGAAGAGAAGGGCCGTAGACCTCAGCC TGCTGAGTCTGTTTCCCCTACTACCCCTCTGCCTCATGAAGAACCTCAAC GCGCTCCAGGTGTGTGTGAGGCGGGTGGGGATTTATAGGGGGGGGTTGCG GAGGTGTCGGGATGAATTGAAGTCGATTGGCGTCCACACCTCGGCGATGC CGTGTCGCTTGCAGTACGATGAGGGGGGGGTAAAAGGGGTCAACGTATGA GCCATAAACAAAGGTACTGCTGTATAGACGACACTGTAGTATGTACATGC TAGGGGTAATGTTCAGTACGCCGCGCGCAAAGTCGACGCCGGGAGGCGCT TCTTGCTTCTTCCCCCCGAATCTGCTGCGACTGTGCTCACGAGTTTGGAG GCGCAAAAGACGAGCGACAAGCGAACCCGTGCACATAACCGCGCAATCCG TCCCCGTCATCCTCGTTATTATAGGCCACACGCGTTGATCCTCCCAATGG GAAGATCAATCATATGTATGTGTATGTGTGTGTAATTATTAAATTACACA TCACCGCGCAATCCGGCCCTGTCGTACAGTCCTTCTAGGATACTCTCGCA TTGATCCTCCCAATAGGAGATCAATCATATTTGCTACAAAAAACTCTGAT CAGACGTGACAAAGGATACATACTGTCTCTACGTGTGTGTGTGTGTGTGT GTTCTCTCTCCCTCCCGCATTCCTCCCTCTCGACAATCTTCCTCCCACTT GCCCCTCCCACGGCCTTGTCGATTATTTTCGCCTGCGTCAATCCAACTAA CGCGCGCGTGCGTGTATACTAAAGTACACGAGCTTTTTCGGAGTCATCTC TATCTTGTACACGGTTTCGTTCGTCATTAAGCGAAGCCTGGATGGGACCT ACTCGGAAGGGGGGCGTTTTTTCGAGGTGCGTACCAAAACGCGAATACCA TGCTGCGGATCAAGAGGCCTGTCATCTTCGAGAAAATACGAGAGTTGGGG GTGGGAGGGGGGGGCGGGGCGGGCCGGGGCCGCGTTTTATTACCGGCTAG TCCTCACTGAGGGTGTAGGGAGAATTGCTTCAAAATAGTGCCTCACTGAC ACAGATTTTACAGATCGCCTGCTGTAATATATCGCGTTCGGAGCATACTA GCCTGTGAGGTAAGGAGATAGGAGTAGCCCCATCCTTGATAGAGTCTGTT TTGATATAAGAGCGTCCCTCCTGAAGTCGGGGACGTATTTGTAATACTAC CCCCCTCCCCCCCTCGTATGGTGAGCGATGGAATAGTGCAGTACAGTACA TAGCCAGTGGAAGACCACAAGTAACAAAAGCCCAGGGCACCGCCTCAAAA TATACCTCCGCGCCATCCCACAGTGTCCTTCCACCACCCGTGACAGCACA AAGATCATCACAACCGATCGAGCGAGCCTACCCGGCTTGTGACTTCGTAT AACCATCCCGATCCCTCCCCCCCCGCCAAAAAAAATGCTTCGTCCTCCTG AGGGCGCATGGTCAATAGTCTGCCTAACAGCTAGGGCATGCAAAACTTGA TTATCCCGACCCCTCCCCAATTCCCCGTCCTCTATCCCTCTTATATAGCG AGAAGAATTACTACTGTACAATGCCGCGATCAACGCGCTTCTCCTTGGGG CTTTGGTGATCGCTAGCGAGGTACATCCCGCGGCGCCCTAAACCCTATTC CGCTTCTCGTCTCTATTCCTCTCTTTCCTGCGCGTTCTATGGCTTTCTCT TCAATGGGGGCTCCGTGGGGGATGGGGGGGGGACGGGCGAGACAGGCGAT CGACGTCAAGTACCGTAGCCCGGTGCCGATGCCGTGGGATACGGTAAAGC TCTGGCGCGTTGGGCCCGGTTTGGCAACGCTCATGAACATGTCGTGCGTG GCCTTCATGTGCCACTACAACGGTGTTAAGTACTACGAGGAGCTCAAGCA CCGTACCGTCAAGAAGTACGTTGTCACCATTGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig74093:96..2832-

>mRNA_H-elongata_contig74093.15104.1 ID=mRNA_H-elongata_contig74093.15104.1|Name=mRNA_H-elongata_contig74093.15104.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig74093:96..2832- (Himanthalia elongata Himel1 dioecious)
ATGCTCCCGGTGGCGTACGGCATGGCCGCTTTCGGGGGTACGGGCCTTGT
TGTGGCTCCTGCGCTCCTCGCGGTATTTGGGGTCGTCTCCGCGTACACCA
TGGTCAGCCTTGGTAGGGCCTCAGAGCGCACCAAGCGTTGGTCCTTTAGG
AGTCTCTGGGCTGAACTAGTCGGGAAGGATACGGCGTGGATGCTCCCGGT
GGCGTACGGCATGGCCGCTTTCGGGGGTACGGGCCTTGTTGTGGCTCCTG
CGCTCCTCGCGGTATTTGGGGTCGTCTCCGCGTACACCATGGTCAGCCTT
GGTAGGGCCTCAGAGCGCACCAAGCGTTGGTCCTTTAGGAGTCTCTGGGC
TGAACTAGTCGGGAAGGATACGGCGTGGGTTATCGAAGTAACCATGGCGC
TCATGACCTTCGGGTGCTGCATCTTCTACTCGGCGTTCGCCGGCGATTTG
TTTTCAGCGCTTGCCAAGACCTCCTTTCTCCCCGCCGTCCTGAAGAGAAG
GGCCGTAGACCTCAGCCTGCTGAGTCTGTTTCCCCTACTACCCCTCTGCC
TCATGAAGAACCTCAACGCGCTCCAGGTTATCGAAGTAACCATGGCGCTC
ATGACCTTCGGGTGCTGCATCTTCTACTCGGCGTTCGCCGGCGATTTGTT
TTCAGCGCTTGCCAAGACCTCCTTTCTCCCCGCCGTCCTGAAGAGAAGGG
CCGTAGACCTCAGCCTGCTGAGTCTGTTTCCCCTACTACCCCTCTGCCTC
ATGAAGAACCTCAACGCGCTCCAGTACACGAGCTTTTTCGGAGTCATCTC
TATCTTGTACACGGTTTCGTTCGTCATTAAGCGAAGCCTGGATGGGACCT
ACTCGGAAGGGGGGCGTTTTTTCGAGTACACGAGCTTTTTCGGAGTCATC
TCTATCTTGTACACGGTTTCGTTCGTCATTAAGCGAAGCCTGGATGGGAC
CTACTCGGAAGGGGGGCGTTTTTTCGAGGCGATCGACGTCAAGTACCGTA
GCCCGGTGCCGATGCCGTGGGATACGGTAAAGCTCTGGCGCGTTGGGCCC
GGTTTGGCAACGCTCATGAACATGTCGTGCGTGGCCTTCATGTGCCACTA
CAACGGTGTTAAGTACTACGAGGAGCTCAAGCACCGTACCGTCAAGAAGT
ACGTTGTCACCATTGGGTGAGCGATCGACGTCAAGTACCGTAGCCCGGTG
CCGATGCCGTGGGATACGGTAAAGCTCTGGCGCGTTGGGCCCGGTTTGGC
AACGCTCATGAACATGTCGTGCGTGGCCTTCATGTGCCACTACAACGGTG
TTAAGTACTACGAGGAGCTCAAGCACCGTACCGTCAAGAAGTACGTTGTC
ACCATTGGGTGA
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