mRNA_H-elongata_contig7375.15068.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI) HSP 1 Score: 134 bits (336), Expect = 1.260e-34 Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
VI M+ECR+RLRK+GRKG S+ DFYFASLD N VLDGGPMG +ARFANHSC+PNCL+QKWSV+GE RV LVAARDIS G
Sbjct: 369 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGGEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVG 449
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A835Z6U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U8_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.980e-26 Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
VI+++EC++RL++LG++G+ DFYFASLD +LD GPMGN+ARFANHSCAPNC LQKWSVMGE RV + A R + G
Sbjct: 252 VISVDECKRRLKQLGKRGKRG---DFYFASLDGQLILDAGPMGNEARFANHSCAPNCELQKWSVMGETRVVMAAKRTLQPG 329
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A7R9U2M8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M8_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 2.310e-23 Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDI 237
VIT ECR RL G QD+YFASL VLD GPMG+ ARFANHSC+PNC LQ W+V+GE RVALVA RDI
Sbjct: 92 VITTEECRTRL------GTYTENQDYYFASLTGPYVLDAGPMGSKARFANHSCSPNCALQVWNVLGEPRVALVAIRDI 163
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: W7TZX2_9STRA (Histone-lysine n-h3 lysine-36 and h4 lysine-20 specific n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZX2_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.980e-22 Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
V+TM E + R+R + ++ QD+YFA+L+ VLD GPMG++ARFANHSCAPNC+LQKW GE + LVAAR + G
Sbjct: 42 VVTMEEAQTRMRSM------SAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAG 116
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A4D9DD50_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD50_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 4.880e-20 Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
V+TM E + R+R + ++ QD+YFA+L+ VLD GPMG++ARFANHSCAPNC+LQKW GE + LVAAR + G
Sbjct: 266 VVTMEEAQTRMRSM------SAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRMGAG 340
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: UPI0007AD01E6 (histone-lysine N-methyltransferase NSD2-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AD01E6) HSP 1 Score: 86.3 bits (212), Expect = 1.410e-19 Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
VI ECR R++ + N+ +FY +LD++R++D GP GN+ARF NHSC PNC QKW+V G+ RV L A DI G
Sbjct: 46 VIDEEECRARIKH----AQENNIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALTDIPAG 122
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A8B9JRW4_ASTMX (Uncharacterized protein n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JRW4_ASTMX) HSP 1 Score: 89.0 bits (219), Expect = 6.690e-19 Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
VI ECR R+R+ + N +FY +LD++R++D GP GN+ARF NHSC PNC QKW+V G+ RV L A DIS G
Sbjct: 191 VIDEEECRARIRQ----AQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALVDISAG 267
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A3B1JXA7_ASTMX (Nuclear receptor binding SET domain protein 1b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1JXA7_ASTMX) HSP 1 Score: 89.0 bits (219), Expect = 7.760e-19 Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
VI ECR R+R+ + N +FY +LD++R++D GP GN+ARF NHSC PNC QKW+V G+ RV L A DIS G
Sbjct: 332 VIDEEECRARIRQ----AQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALVDISTG 408
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: UPI000BBD94D9 (histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific isoform X1 n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD94D9) HSP 1 Score: 89.0 bits (219), Expect = 8.070e-19 Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
VI ECR R+R+ + N +FY +LD++R++D GP GN+ARF NHSC PNC QKW+V G+ RV L A DIS G
Sbjct: 1548 VIDEEECRARIRQ----AQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALVDISTG 1624
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A3B4CHK5_PYGNA (Nuclear receptor binding SET domain protein 1 n=2 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4CHK5_PYGNA) HSP 1 Score: 88.6 bits (218), Expect = 1.100e-18 Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
VI ECR R+R + N +FY +LD++R++D GP GN+ARF NHSC PNC QKW+V G+ RV L A DIS G
Sbjct: 1573 VIDEEECRARIRH----AQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVSGDTRVGLFALVDISAG 1649 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7375.15068.1 >prot_H-elongata_contig7375.15068.1 ID=prot_H-elongata_contig7375.15068.1|Name=mRNA_H-elongata_contig7375.15068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp MVVRWVTTPASLIIAVPPTVFFRSGVSWARIESLSSRRETFHLAback to top mRNA from alignment at H-elongata_contig7375:8098..9026+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7375.15068.1 ID=mRNA_H-elongata_contig7375.15068.1|Name=mRNA_H-elongata_contig7375.15068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=929bp|location=Sequence derived from alignment at H-elongata_contig7375:8098..9026+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7375:8098..9026+ >mRNA_H-elongata_contig7375.15068.1 ID=mRNA_H-elongata_contig7375.15068.1|Name=mRNA_H-elongata_contig7375.15068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig7375:8098..9026+ (Himanthalia elongata Himel1 dioecious)back to top |