mRNA_H-elongata_contig7375.15068.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7375.15068.1
Unique NamemRNA_H-elongata_contig7375.15068.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.260e-34
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            VI M+ECR+RLRK+GRKG   S+ DFYFASLD N VLDGGPMG +ARFANHSC+PNCL+QKWSV+GE RV LVAARDIS G
Sbjct:  369 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGGEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVG 449          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A835Z6U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.980e-26
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            VI+++EC++RL++LG++G+     DFYFASLD   +LD GPMGN+ARFANHSCAPNC LQKWSVMGE RV + A R +  G
Sbjct:  252 VISVDECKRRLKQLGKRGKRG---DFYFASLDGQLILDAGPMGNEARFANHSCAPNCELQKWSVMGETRVVMAAKRTLQPG 329          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A7R9U2M8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.310e-23
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDI 237
            VIT  ECR RL      G     QD+YFASL    VLD GPMG+ ARFANHSC+PNC LQ W+V+GE RVALVA RDI
Sbjct:   92 VITTEECRTRL------GTYTENQDYYFASLTGPYVLDAGPMGSKARFANHSCSPNCALQVWNVLGEPRVALVAIRDI 163          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: W7TZX2_9STRA (Histone-lysine n-h3 lysine-36 and h4 lysine-20 specific n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZX2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.980e-22
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            V+TM E + R+R +      ++ QD+YFA+L+   VLD GPMG++ARFANHSCAPNC+LQKW   GE  + LVAAR +  G
Sbjct:   42 VVTMEEAQTRMRSM------SAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAG 116          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A4D9DD50_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD50_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.880e-20
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            V+TM E + R+R +      ++ QD+YFA+L+   VLD GPMG++ARFANHSCAPNC+LQKW   GE  + LVAAR +  G
Sbjct:  266 VVTMEEAQTRMRSM------SAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRMGAG 340          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: UPI0007AD01E6 (histone-lysine N-methyltransferase NSD2-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AD01E6)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-19
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            VI   ECR R++      + N+  +FY  +LD++R++D GP GN+ARF NHSC PNC  QKW+V G+ RV L A  DI  G
Sbjct:   46 VIDEEECRARIKH----AQENNIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALTDIPAG 122          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A8B9JRW4_ASTMX (Uncharacterized protein n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JRW4_ASTMX)

HSP 1 Score: 89.0 bits (219), Expect = 6.690e-19
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            VI   ECR R+R+     + N   +FY  +LD++R++D GP GN+ARF NHSC PNC  QKW+V G+ RV L A  DIS G
Sbjct:  191 VIDEEECRARIRQ----AQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALVDISAG 267          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A3B1JXA7_ASTMX (Nuclear receptor binding SET domain protein 1b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1JXA7_ASTMX)

HSP 1 Score: 89.0 bits (219), Expect = 7.760e-19
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            VI   ECR R+R+     + N   +FY  +LD++R++D GP GN+ARF NHSC PNC  QKW+V G+ RV L A  DIS G
Sbjct:  332 VIDEEECRARIRQ----AQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALVDISTG 408          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: UPI000BBD94D9 (histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific isoform X1 n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD94D9)

HSP 1 Score: 89.0 bits (219), Expect = 8.070e-19
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            VI   ECR R+R+     + N   +FY  +LD++R++D GP GN+ARF NHSC PNC  QKW+V G+ RV L A  DIS G
Sbjct: 1548 VIDEEECRARIRQ----AQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALVDISTG 1624          
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Match: A0A3B4CHK5_PYGNA (Nuclear receptor binding SET domain protein 1 n=2 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4CHK5_PYGNA)

HSP 1 Score: 88.6 bits (218), Expect = 1.100e-18
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    4 VITMNECRKRLRKLGRKGEANSTQDFYFASLDRNRVLDGGPMGNDARFANHSCAPNCLLQKWSVMGENRVALVAARDISFG 246
            VI   ECR R+R      + N   +FY  +LD++R++D GP GN+ARF NHSC PNC  QKW+V G+ RV L A  DIS G
Sbjct: 1573 VIDEEECRARIRH----AQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVSGDTRVGLFALVDISAG 1649          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7375.15068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN51_ECTSI1.260e-3476.54Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835Z6U8_9STRA2.980e-2661.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U2M8_9STRA2.310e-2362.82Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7TZX2_9STRA2.980e-2253.09Histone-lysine n-h3 lysine-36 and h4 lysine-20 spe... [more]
A0A4D9DD50_9STRA4.880e-2053.09Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI0007AD01E61.410e-1948.15histone-lysine N-methyltransferase NSD2-like n=1 T... [more]
A0A8B9JRW4_ASTMX6.690e-1950.62Uncharacterized protein n=2 Tax=Astyanax mexicanus... [more]
A0A3B1JXA7_ASTMX7.760e-1950.62Nuclear receptor binding SET domain protein 1b n=1... [more]
UPI000BBD94D98.070e-1950.62histone-lysine N-methyltransferase, H3 lysine-36 a... [more]
A0A3B4CHK5_PYGNA1.100e-1850.62Nuclear receptor binding SET domain protein 1 n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7375contigH-elongata_contig7375:8098..9026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size249
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7375.15068.1prot_H-elongata_contig7375.15068.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7375 8213..9026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.4310231-UTR-H-elongata_contig7375:8097..82121622931141.4310231-UTR-H-elongata_contig7375:8097..8212Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7375 8098..8212 +
1691679715.5555897-UTR-H-elongata_contig7375:8097..82121691679715.5555897-UTR-H-elongata_contig7375:8097..8212Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7375 8098..8212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.4492843-CDS-H-elongata_contig7375:8212..82181622931141.4492843-CDS-H-elongata_contig7375:8212..8218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7375 8213..8218 +
1691679715.5632286-CDS-H-elongata_contig7375:8212..82181691679715.5632286-CDS-H-elongata_contig7375:8212..8218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7375 8213..8218 +
1622931141.4671414-CDS-H-elongata_contig7375:8900..90261622931141.4671414-CDS-H-elongata_contig7375:8900..9026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7375 8901..9026 +
1691679715.5711634-CDS-H-elongata_contig7375:8900..90261691679715.5711634-CDS-H-elongata_contig7375:8900..9026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7375 8901..9026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7375.15068.1

>prot_H-elongata_contig7375.15068.1 ID=prot_H-elongata_contig7375.15068.1|Name=mRNA_H-elongata_contig7375.15068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MVVRWVTTPASLIIAVPPTVFFRSGVSWARIESLSSRRETFHLA
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mRNA from alignment at H-elongata_contig7375:8098..9026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7375.15068.1 ID=mRNA_H-elongata_contig7375.15068.1|Name=mRNA_H-elongata_contig7375.15068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=929bp|location=Sequence derived from alignment at H-elongata_contig7375:8098..9026+ (Himanthalia elongata Himel1 dioecious)
AAGGTTATAACGATGAACGAGTGCCGCAAACGCCTGCGCAAGCTGGGAAG AAAGGGCGAGGCAAATTCCACGCAAGATTTCTACTTCGCCTCGCTTGATC GAAATCGAGTGCTTGATGGTGGTGAGAACCAATACCAAGCTTGGTGTGCG TGCAGCCGCTGTGATTGATTTCCCCGGCTCTTTGGATTGTTTGAAAGAGT TTAATTGGAAGCCCCACACTCTCATGAGGCCTAACTGCTTAACTCTCGAT CTGCTCCGGTGGCGTTGATGGTTGCCGTTGTCCTGGTCGTTGTCGCGTGC GATCTTGTCGCGGTCGCTGGTGTCAACCTAACCGTAACCCTAACCGTAAC CCTAACCCTACTTGTACAATTACCCCAATCCAGTAGTCCACTTGTACAAG TACATGGTTAATTCCAAAGTAGATACTGCAGCTACCAACCGTTCCTCTTG CTGCCTGTAGAGTAGAGCAACCTTATCCCTAACCTGCCTCGTTTTCTTTT TTCTTGCCCAACGGTTGGCCAAAATTTTGTCACTACGGCCACACGAGCAC AGTACCAGATTCCTGTACCTTTTATGACCATTTCTAGCGTTGAGATCGAT GACGCTTAGTTGACCGCGCCCTCTTGGGCCATGCTGTAGTACAATGTAAT GTAATGTATCATTGATATTATCAATACTATTAATACCTTGTTGTACTATT AATAGTGTACGATAATGCAATGTACCATTAATGCCTTACTGTACTAATGT ACAATTAATACTATACGAGTGTACCACAATGTAATGTAATGTTTATCTGA CAGGTCCGATGGGTAACGACGCCCGCTTCGCTAATCATAGCTGTGCCCCC AACTGTCTTCTTCAGAAGTGGAGTGTCATGGGCGAGAATAGAGTCGCTCT CGTCGCGGCGAGAGACATTTCATTTGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig7375:8098..9026+

>mRNA_H-elongata_contig7375.15068.1 ID=mRNA_H-elongata_contig7375.15068.1|Name=mRNA_H-elongata_contig7375.15068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig7375:8098..9026+ (Himanthalia elongata Himel1 dioecious)
ATGGTGATGGTGGTCCGATGGGTAACGACGCCCGCTTCGCTAATCATAGC
TGTGCCCCCAACTGTCTTCTTCAGAAGTGGAGTGTCATGGGCGAGAATAG
AGTCGCTCTCGTCGCGGCGAGAGACATTTCATTTGGCGGTCCGATGGGTA
ACGACGCCCGCTTCGCTAATCATAGCTGTGCCCCCAACTGTCTTCTTCAG
AAGTGGAGTGTCATGGGCGAGAATAGAGTCGCTCTCGTCGCGGCGAGAGA
CATTTCATTTGGCG
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