mRNA_H-elongata_contig119449.1496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119449.1496.1
Unique NamemRNA_H-elongata_contig119449.1496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119449.1496.1 vs. uniprot
Match: D8LR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.270e-47
Identity = 110/249 (44.18%), Postives = 133/249 (53.41%), Query Frame = 1 
Query:    1 QALVEISTSGANPSAAATTSLIPTRGPRRATVVAXXXX-VRNLISVCVDLRSENASLKERVAAIQTQTPSRRFAPPTEEE----------------------------------ASPSVEVTKTSDEAARVFGQLLAVGVFRFLGPQSLEEGRRVCREWRDKCTSDVCWNKLCVNRWRLSPEQMHAEMWRI-DAGDERGKP-------VSSLTPPPSWRQVYGFLHKSRRVPTGALSPMHLVVGNIVKQ 618
            +ALVEISTSGAN SA+A TSLIPTRGPRRA VVA     VR+LIS C+ LR + ASL  R A    Q                                               A    E       +A+VFGQLL++ VF FLGPQSLEE  +V REWRDKCT D  W+ LCV+RWRL PEQ HAE+WR+ D  D +GK        VS   PPP+W+ +YG LH     P+G   P H+V+G  V++
Sbjct:  219 EALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLSARFAEALRQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGLDSGGAGGGAEAVVGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGKGKXXXVARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPSHMVIGRSVQE 467
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BLAST of mRNA_H-elongata_contig119449.1496.1 vs. uniprot
Match: A0A6H5JYB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 5.710e-47
Identity = 107/253 (42.29%), Postives = 135/253 (53.36%), Query Frame = 1 
Query:    1 QALVEISTSGANPSAAATTSLIPTRGPRRATVVAXXXX-VRNLISVCVDLRSENASLKERVAAIQTQTPSRRFAPPT----------------------------------EEEASPSVEVTKTSDEAARVFGQLLAVGVFRFLGPQSLEEGRRVCREWRDKCTSDVCWNKLCVNRWRLSPEQMHAEMWRI-DAGDERGKP-----------VSSLTPPPSWRQVYGFLHKSRRVPTGALSPMHLVVGNIVKQ 618
            +ALVEISTSGAN SA+A TSLIPTRGPRRA VVA     VR+LIS C+ LR + ASL  R+A    Q                                            +   +     T     +A+VFGQLL++ VF FLGPQSLEE  +V R+WRDKCT D  W+ LCV+RWRL PEQ HAE+WR+ D  D  GK            +S   PPP+W+ +YG LH+    P+G   P H+V+G  V++
Sbjct:   74 EALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARLAEALRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSHGRDSGGASGAVATAGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSRDWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGTGKXXXXXKGVARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPSHMVIGRSVQE 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119449.1496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR75_ECTSI1.270e-4744.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYB8_9PHAE5.710e-4742.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119449contigH-elongata_contig119449:692..1790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-06_004090.1
Exons2
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.8632412-CDS-H-elongata_contig119449:691..10891622929698.8632412-CDS-H-elongata_contig119449:691..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119449 692..1089 +
1691679123.4345994-CDS-H-elongata_contig119449:691..10891691679123.4345994-CDS-H-elongata_contig119449:691..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119449 692..1089 +
1622929698.892221-CDS-H-elongata_contig119449:1570..17901622929698.892221-CDS-H-elongata_contig119449:1570..1790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119449 1571..1790 +
1691679123.4437273-CDS-H-elongata_contig119449:1570..17901691679123.4437273-CDS-H-elongata_contig119449:1570..1790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119449 1571..1790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119449.1496.1prot_H-elongata_contig119449.1496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119449 692..1790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119449.1496.1

>prot_H-elongata_contig119449.1496.1 ID=prot_H-elongata_contig119449.1496.1|Name=mRNA_H-elongata_contig119449.1496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
QALVEISTSGANPSAAATTSLIPTRGPRRATVVAXXXXVRNLISVCVDLR
SENASLKERVAAIQTQTPSRRFAPPTEEEASPSVEVTKTSDEAARVFGQL
LAVGVFRFLGPQSLEEGRRVCREWRDKCTSDVCWNKLCVNRWRLSPEQMH
AEMWRIDAGDERGKPVSSLTPPPSWRQVYGFLHKSRRVPTGALSPMHLVV
GNIVKQ
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mRNA from alignment at H-elongata_contig119449:692..1790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119449.1496.1 ID=mRNA_H-elongata_contig119449.1496.1|Name=mRNA_H-elongata_contig119449.1496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1099bp|location=Sequence derived from alignment at H-elongata_contig119449:692..1790+ (Himanthalia elongata Himel1 dioecious)
CAGGCTCTCGTAGAAATTAGTACGAGCGGCGCAAACCCTTCGGCGGCGGC
AACGACGAGTCTCATTCCCACCCGGGGCCCGCGCCGCGCCACCGTGGTTG
CCTNNNNNNNNNNCGTGCGCAATCTGATCTCCGTCTGTGTCGATCTTCGG
TCGGAAAACGCCTCCTTAAAAGAAAGAGTGGCCGCAATCCAGACGCAAAC
GCCTTCGCGGAGGTTTGCTCCGCCAACCGAAGAGGAGGCGAGTCCTTCCG
TGGAGGTCACTAAGACGAGCGACGAGGCTGCAAGAGTCTTCGGGCAGCTT
CTCGCCGTTGGTGTGTTTAGATTTCTGGGTCCACAGTCTCTGGAGGAGGG
AAGAAGGGTGTGTCGCGAGTGGCGTGATAAGTGCACCTCGGACGTATGGT
GAGTGAAGCCGGCTGGTCTTAGGGAATTGCAGTGTTTAGCTCCGCGATAG
TGGCAGGAGGCACAAGCGTACGCGTTTGAGTAAGCAGCCGGTAGTTTTTA
TTTATGTGTTGGACGCGAAATCCTGGATGTTTTTTTTGCTTTTGTAGTAA
ATTGCTCATCCCGAGGCTTTGTAGTGTGTGTTTCGGAGGAGGTGCGAATG
CTCACACGATCGATCCGCCAACGGCTTGCGGAGTCTTCTCTACAAAACCC
CGTCTTGCTCGCCCTCCCAATGGTAAGACCGTTGAACCGCCCAAAGGTTT
TTTAAAATCAAGCATGCATTTTAATGCGAAACGGCCATACTACAGCCAAA
ACGTTCCGAAGTGTGCGTTCGTCGCTCAACCCCAAGCCCTTGTCTCCTCC
GGTTGACCCTTCTCCCCGGGTCTCCGTGGTTTCATTGTATTCGTTTTATT
GTATCTCGCTTTTTATTCACCCTTCGTAGCTGGAACAAGCTGTGCGTGAA
TCGTTGGAGGCTAAGCCCCGAGCAGATGCACGCGGAAATGTGGCGCATCG
ACGCAGGGGATGAGAGGGGGAAACCGGTGTCTTCCCTCACGCCACCCCCA
TCCTGGCGGCAGGTGTACGGCTTCCTCCATAAGAGCCGCAGGGTGCCGAC
GGGGGCGTTGTCACCGATGCACCTAGTGGTAGGAAATATCGTCAAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig119449:692..1790+

>mRNA_H-elongata_contig119449.1496.1 ID=mRNA_H-elongata_contig119449.1496.1|Name=mRNA_H-elongata_contig119449.1496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig119449:692..1790+ (Himanthalia elongata Himel1 dioecious)
CAGGCTCTCGTAGAAATTAGTACGAGCGGCGCAAACCCTTCGGCGGCGGC
AACGACGAGTCTCATTCCCACCCGGGGCCCGCGCCGCGCCACCGTGGTTG
CCTNNNNNNNNNNCGTGCGCAATCTGATCTCCGTCTGTGTCGATCTTCGG
TCGGAAAACGCCTCCTTAAAAGAAAGAGTGGCCGCAATCCAGACGCAAAC
GCCTTCGCGGAGGTTTGCTCCGCCAACCGAAGAGGAGGCGAGTCCTTCCG
TGGAGGTCACTAAGACGAGCGACGAGGCTGCAAGAGTCTTCGGGCAGCTT
CTCGCCGTTGGTGTGTTTAGATTTCTGGGTCCACAGTCTCTGGAGGAGGG
AAGAAGGGTGTGTCGCGAGTGGCGTGATAAGTGCACCTCGGACGTATGCA
GGCTCTCGTAGAAATTAGTACGAGCGGCGCAAACCCTTCGGCGGCGGCAA
CGACGAGTCTCATTCCCACCCGGGGCCCGCGCCGCGCCACCGTGGTTGCC
TNNNNNNNNNNCGTGCGCAATCTGATCTCCGTCTGTGTCGATCTTCGGTC
GGAAAACGCCTCCTTAAAAGAAAGAGTGGCCGCAATCCAGACGCAAACGC
CTTCGCGGAGGTTTGCTCCGCCAACCGAAGAGGAGGCGAGTCCTTCCGTG
GAGGTCACTAAGACGAGCGACGAGGCTGCAAGAGTCTTCGGGCAGCTTCT
CGCCGTTGGTGTGTTTAGATTTCTGGGTCCACAGTCTCTGGAGGAGGGAA
GAAGGGTGTGTCGCGAGTGGCGTGATAAGTGCACCTCGGACGTATGCTGG
AACAAGCTGTGCGTGAATCGTTGGAGGCTAAGCCCCGAGCAGATGCACGC
GGAAATGTGGCGCATCGACGCAGGGGATGAGAGGGGGAAACCGGTGTCTT
CCCTCACGCCACCCCCATCCTGGCGGCAGGTGTACGGCTTCCTCCATAAG
AGCCGCAGGGTGCCGACGGGGGCGTTGTCACCGATGCACCTAGTGGTAGG
AAATATCGTCAAGCAGCTGGAACAAGCTGTGCGTGAATCGTTGGAGGCTA
AGCCCCGAGCAGATGCACGCGGAAATGTGGCGCATCGACGCAGGGGATGA
GAGGGGGAAACCGGTGTCTTCCCTCACGCCACCCCCATCCTGGCGGCAGG
TGTACGGCTTCCTCCATAAGAGCCGCAGGGTGCCGACGGGGGCGTTGTCA
CCGATGCACCTAGTGGTAGGAAATATCGTCAAGCAG
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