prot_H-elongata_contig119449.1496.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig119449.1496.1
Unique Nameprot_H-elongata_contig119449.1496.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length206
Homology
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BLAST of mRNA_H-elongata_contig119449.1496.1 vs. uniprot
Match: D8LR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.270e-47
Identity = 110/249 (44.18%), Postives = 133/249 (53.41%), Query Frame = 0 
Query:    1 QALVEISTSGANPSAAATTSLIPTRGPRRATVVAXXXX-VRNLISVCVDLRSENASLKERVAAIQTQTPSRRFAPPTEEE----------------------------------ASPSVEVTKTSDEAARVFGQLLAVGVFRFLGPQSLEEGRRVCREWRDKCTSDVCWNKLCVNRWRLSPEQMHAEMWRI-DAGDERGKP-------VSSLTPPPSWRQVYGFLHKSRRVPTGALSPMHLVVGNIVKQ 206
            +ALVEISTSGAN SA+A TSLIPTRGPRRA VVA     VR+LIS C+ LR + ASL  R A    Q                                               A    E       +A+VFGQLL++ VF FLGPQSLEE  +V REWRDKCT D  W+ LCV+RWRL PEQ HAE+WR+ D  D +GK        VS   PPP+W+ +YG LH     P+G   P H+V+G  V++
Sbjct:  219 EALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLSARFAEALRQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGLDSGGAGGGAEAVVGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGKGKXXXVARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPSHMVIGRSVQE 467
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BLAST of mRNA_H-elongata_contig119449.1496.1 vs. uniprot
Match: A0A6H5JYB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 5.710e-47
Identity = 107/253 (42.29%), Postives = 135/253 (53.36%), Query Frame = 0 
Query:    1 QALVEISTSGANPSAAATTSLIPTRGPRRATVVAXXXX-VRNLISVCVDLRSENASLKERVAAIQTQTPSRRFAPPT----------------------------------EEEASPSVEVTKTSDEAARVFGQLLAVGVFRFLGPQSLEEGRRVCREWRDKCTSDVCWNKLCVNRWRLSPEQMHAEMWRI-DAGDERGKP-----------VSSLTPPPSWRQVYGFLHKSRRVPTGALSPMHLVVGNIVKQ 206
            +ALVEISTSGAN SA+A TSLIPTRGPRRA VVA     VR+LIS C+ LR + ASL  R+A    Q                                            +   +     T     +A+VFGQLL++ VF FLGPQSLEE  +V R+WRDKCT D  W+ LCV+RWRL PEQ HAE+WR+ D  D  GK            +S   PPP+W+ +YG LH+    P+G   P H+V+G  V++
Sbjct:   74 EALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARLAEALRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSHGRDSGGASGAVATAGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSRDWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGTGKXXXXXKGVARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPSHMVIGRSVQE 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119449.1496.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR75_ECTSI1.270e-4744.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYB8_9PHAE5.710e-4742.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..66
NoneNo IPR availableGENE3D1.20.1280.50coord: 87..187
e-value: 2.1E-8
score: 36.0
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 104..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119449contigH-elongata_contig119449:692..1790 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119449.1496.1mRNA_H-elongata_contig119449.1496.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig119449 692..1790 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig119449.1496.1 ID=prot_H-elongata_contig119449.1496.1|Name=mRNA_H-elongata_contig119449.1496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
QALVEISTSGANPSAAATTSLIPTRGPRRATVVAXXXXVRNLISVCVDLR
SENASLKERVAAIQTQTPSRRFAPPTEEEASPSVEVTKTSDEAARVFGQL
LAVGVFRFLGPQSLEEGRRVCREWRDKCTSDVCWNKLCVNRWRLSPEQMH
AEMWRIDAGDERGKPVSSLTPPPSWRQVYGFLHKSRRVPTGALSPMHLVV
GNIVKQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf