mRNA_H-elongata_contig72657.14936.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: W7U2W4_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2W4_9STRA) HSP 1 Score: 213 bits (542), Expect = 2.370e-65 Identity = 106/175 (60.57%), Postives = 132/175 (75.43%), Query Frame = 1
Query: 1 KDKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRFDDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYA---EDDPSSPGGKARADFSWQRVR 516
KDK+ LER L EAR CQ L+LWLDCD EGENIAFEV++VC N +R+ RARFSALIPREI ++++ L PN +Q++AV AR EIDLR+G+AFTRFQT++LQ +FD ++D +ISYGPCQFPT+GFVVDRYK I++FQ E FW I+M Y ED P G R F W+R R
Sbjct: 97 KDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITR--FQWKRER 269
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A453IUH3_AEGTS (DNA topoisomerase n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IUH3_AEGTS) HSP 1 Score: 197 bits (500), Expect = 2.090e-60 Identity = 99/172 (57.56%), Postives = 126/172 (73.26%), Query Frame = 1
Query: 4 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSW 504
DK+D++R L EEAR CQWLVLWLDCDREGENIA+EV+++C NRN+ I RARFSALIPREI +VQ L PN+ A AV+ARQEIDLR+G++FTRFQTM L+ F + ++ V+SYGPCQFPTLGF+V+R+ IQA +PE FW+I + D+ + A F W
Sbjct: 89 DKQDIKRTLEEEARTCQWLVLWLDCDREGENIAYEVVDICAGANRNLNIWRARFSALIPREIHEAVQHLARPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDVSGEERNMVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGT-------ASFIW 253
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.110e-60 Identity = 105/175 (60.00%), Postives = 132/175 (75.43%), Query Frame = 1
Query: 1 KDKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRFDDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYA---EDDPSSPGGKARADFSWQRVR 516
KDK+ LER L EAR CQ L+LWLDCD EGENIAFEV++VC N +R+ RARFSALIPREI ++++ L PN +Q++AV AR EIDLR+G+AFTRFQT++LQ +FD ++D +ISYGPCQFPT+GFVVDRYK I++FQ E FW I+M Y E+ P G R F W+R R
Sbjct: 97 KDKEGLERCLKSEARACQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGARENGDEGPQGFTR--FQWKRER 269
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A0L9UEG3_PHAAN (DNA topoisomerase n=2 Tax=Vigna TaxID=3913 RepID=A0A0L9UEG3_PHAAN) HSP 1 Score: 198 bits (503), Expect = 9.330e-60 Identity = 108/174 (62.07%), Postives = 126/174 (72.41%), Query Frame = 1
Query: 4 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF--DDLQDG---VISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 510
DKKD++R L EEAR CQWLVLWLDCDREGENIAFEVI+VC N ++ I RARFSALI REI +SVQ L P + A AV+ARQEIDLR+G++FTRFQTM ++ F D DG V+SYGPCQFPTLGFVV+RY IQA +PE FWSI + D G+ A FSW R
Sbjct: 93 DKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIDVCTAVNPHLTIKRARFSALIEREIHHSVQNLEEPKKSLADAVDARQEIDLRIGASFTRFQTMLMKDAFAIDTATDGRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWSINCAHDSD------GRI-AKFSWMR 259
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A453IUQ1_AEGTS (DNA topoisomerase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IUQ1_AEGTS) HSP 1 Score: 197 bits (502), Expect = 1.220e-59 Identity = 100/174 (57.47%), Postives = 127/174 (72.99%), Query Frame = 1
Query: 4 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 510
DK+D++R L EEAR CQWLVLWLDCDREGENIA+EV+++C NRN+ I RARFSALIPREI +VQ L PN+ A AV+ARQEIDLR+G++FTRFQTM L+ F + ++ V+SYGPCQFPTLGF+V+R+ IQA +PE FW+I + D+ + A F W R
Sbjct: 82 DKQDIKRTLEEEARTCQWLVLWLDCDREGENIAYEVVDICAGANRNLNIWRARFSALIPREIHEAVQHLARPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDVSGEERNMVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGT-------ASFIWIR 248
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A1S4CAX6_TOBAC (DNA topoisomerase n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CAX6_TOBAC) HSP 1 Score: 198 bits (504), Expect = 1.430e-59 Identity = 102/174 (58.62%), Postives = 126/174 (72.41%), Query Frame = 1
Query: 4 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 510
DK D++R L EEARGCQW++LWLDCDREGENIAFEV+EVC + N N+ + RARFSALI REI SVQ L PN+ + AV+ RQEIDLR+G++FTRFQTM L+ F D ++ V+SYGPCQFPTLGFVV+RY IQA +PE FW+I + D+ S A F+W R
Sbjct: 107 DKLDIKRTLEEEARGCQWIILWLDCDREGENIAFEVLEVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDVRQEIDLRIGASFTRFQTMLLRDAFVLDFATDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCTHNFDEGS-------ATFNWMR 273
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A6H5JJR2_9PHAE (DNA topoisomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR2_9PHAE) HSP 1 Score: 192 bits (489), Expect = 2.830e-59 Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 1
Query: 4 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQ 312
DKKDLERQLV+EARGCQWLVLWLDCDREGENIA+EVIEVC RRNRN+RILRARFSALIPR+ILNSVQ L PPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQ
Sbjct: 97 DKKDLERQLVDEARGCQWLVLWLDCDREGENIAYEVIEVCKRRNRNIRILRARFSALIPRDILNSVQNLVPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQ 199
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: M1BH01_SOLTU (DNA topoisomerase n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1BH01_SOLTU) HSP 1 Score: 193 bits (490), Expect = 3.720e-59 Identity = 99/174 (56.90%), Postives = 124/174 (71.26%), Query Frame = 1
Query: 4 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 510
DK D++R L EAR CQW+VLWLDCDREGENIAFEV++VC + N N+ + RARFSALI REI SVQ L PN+ + AV+ RQEIDLR+G++FTRFQTM L+ F D ++ V+SYGPCQFPTLGFVV+RY IQA +PE FW+I + D+ + A F+W R
Sbjct: 27 DKLDIKRTLEAEARSCQWIVLWLDCDREGENIAFEVLDVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDVRQEIDLRIGASFTRFQTMLLRGAFVLDFATDDRNIVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCTHNSDEGT-------ATFNWMR 193
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A834WWY7_9FABA (DNA topoisomerase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WWY7_9FABA) HSP 1 Score: 206 bits (524), Expect = 9.920e-59 Identity = 106/174 (60.92%), Postives = 129/174 (74.14%), Query Frame = 1
Query: 4 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 510
DKKD++R L EEAR CQWLVLWLDCDREGENIAFEVIEVC+ NR++ + RARFSALI REI SVQ L PN+ A AV+ARQEIDLR+G++FTRFQTM ++ F D ++ V+SYGPCQFPTLGF+V+RY IQA +PE FWSI + D+ + A+FSW R
Sbjct: 98 DKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCMAANRHLTLKRARFSALIDREIHQSVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMRDAFIIDSASDDRNLVLSYGPCQFPTLGFIVERYWEIQAHEPEEFWSINCSHKSDEGT-------ANFSWMR 264
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A2Z7AKT5_9LAMI (DNA topoisomerase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AKT5_9LAMI) HSP 1 Score: 194 bits (493), Expect = 2.090e-58 Identity = 100/174 (57.47%), Postives = 125/174 (71.84%), Query Frame = 1
Query: 4 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 510
DK D+++ L EEAR CQWL+LWLDCDREGENIAFEV+EVC R NRN+ I RARFSALI R+I +VQ L PN+ A AV+ RQEIDLR+G++FTRFQTM L+ F D ++ V+SYGPCQFPTLGFVV+R+ IQ+ +PE FW+I + + + A FSW R
Sbjct: 96 DKSDIQKTLEEEARTCQWLILWLDCDREGENIAFEVVEVCTRANRNLNIWRARFSALIDRDIHYAVQHLLRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVLDVSADDRNLVLSYGPCQFPTLGFVVERFWEIQSHEPEEFWTINCTHNSHEGT-------ASFSWMR 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72657.14936.1 >prot_H-elongata_contig72657.14936.1 ID=prot_H-elongata_contig72657.14936.1|Name=mRNA_H-elongata_contig72657.14936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp KDKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRIback to top mRNA from alignment at H-elongata_contig72657:196..2563- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72657.14936.1 ID=mRNA_H-elongata_contig72657.14936.1|Name=mRNA_H-elongata_contig72657.14936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2368bp|location=Sequence derived from alignment at H-elongata_contig72657:196..2563- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72657:196..2563- >mRNA_H-elongata_contig72657.14936.1 ID=mRNA_H-elongata_contig72657.14936.1|Name=mRNA_H-elongata_contig72657.14936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig72657:196..2563- (Himanthalia elongata Himel1 dioecious)back to top |