prot_H-elongata_contig72548.14924.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72548.14924.1
Unique Nameprot_H-elongata_contig72548.14924.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length38
Homology
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BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: D7FP06_ECTSI (Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP06_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.290e-10
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 0 
Query:    1 MGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAHK 37
            MGTGVRVKKIGP  V VYAVGLYVDEK AA EL  HK
Sbjct:   57 MGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHK 93
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BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A835Z9G1_9STRA (Chalcone isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.250e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 0 
Query:    2 GTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAH 36
            GTGVRVKKIGP A  VYAVG+YVD  +A +EL+ H
Sbjct:   45 GTGVRVKKIGPAAFKVYAVGMYVDSAKARSELSKH 79
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BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7R9YAW0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAW0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.230e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 
Query:    2 GTGVRVKKIGPVAVNVYAVGLYVDEKRAANEL 33
            GTGVRVKKIGPVAV VYAVGLYVD++   + L
Sbjct:   49 GTGVRVKKIGPVAVKVYAVGLYVDQRAVQSSL 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FP06_ECTSI1.290e-1081.08Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z9G1_9STRA3.250e-768.57Chalcone isomerase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7R9YAW0_9STRA1.230e-675.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016088Chalcone isomerase, 3-layer sandwichGENE3D3.50.70.10coord: 1..37
e-value: 7.5E-8
score: 34.5
IPR036298Chalcone isomerase superfamilySUPERFAMILY54626Chalcone isomerasecoord: 1..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72548contigH-elongata_contig72548:83..196 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72548.14924.1mRNA_H-elongata_contig72548.14924.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72548 83..208 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72548.14924.1 ID=prot_H-elongata_contig72548.14924.1|Name=mRNA_H-elongata_contig72548.14924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAHK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016088Chalcone_isomerase_3-sand
IPR036298Chalcone_isomerase_sf