mRNA_H-elongata_contig72548.14924.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: D7FP06_ECTSI (Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP06_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 2.810e-12 Identity = 33/41 (80.49%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 1 GLSLMGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAHK 123
G SLMGTGVRVKKIGP V VYAVGLYVDEK AA EL HK
Sbjct: 53 GSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHK 93
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A835Z9G1_9STRA (Chalcone isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G1_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 3.850e-8 Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 7 SLMGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAH 120
SL GTGVRVKKIGP A VYAVG+YVD +A +EL+ H
Sbjct: 42 SLAGTGVRVKKIGPAAFKVYAVGMYVDSAKARSELSKH 79
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7R9YAW0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAW0_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 3.970e-7 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 7 SLMGTGVRVKKIGPVAVNVYAVGLYVDEKRAANEL 111
+L GTGVRVKKIGPVAV VYAVGLYVD++ + L
Sbjct: 46 TLAGTGVRVKKIGPVAVKVYAVGLYVDQRAVQSSL 80
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7S2S0W0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0W0_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.490e-6 Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 1 GLSLMGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAHK 123
G+SL+G GVRVKK+G ++VNVYA+G++VD +R+ L A K
Sbjct: 332 GMSLLGCGVRVKKLGMISVNVYALGIFVDAERSKPHLEAFK 372
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: W7TIJ2_9STRA (Chalcone isomerase, subgroup n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIJ2_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 1.030e-5 Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1
Query: 1 GLSLMGTGVRVKK-IGPVAVNVYAVGLYVDEKRAANELAAHK 123
GLSL G GVRVKK +GP+AV VY VGLYVD+ A +L+ K
Sbjct: 42 GLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFK 83
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7S1DPN3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DPN3_HEMAN) HSP 1 Score: 46.6 bits (109), Expect = 2.370e-5 Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1
Query: 4 LSLMGTGVRVKKI-GPVAVNVYAVGLYVDE-------KRAANELAAHK 123
L LMG G R KKI GPVAVNVYA+G+YVD+ K A++E AA K
Sbjct: 29 LELMGCGERKKKIVGPVAVNVYAIGMYVDQGPAIVAGKGASSEAAAAK 76
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A830H745_9CHLO (Chalcone_isomerase domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H745_9CHLO) HSP 1 Score: 48.1 bits (113), Expect = 2.980e-5 Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1
Query: 1 GLSLMGTGVRVKKIGPVAVNVYAVGLYVDEK--RAANE 108
GL +G GVRVKKIGPV V VYAV LYVD +AAN+
Sbjct: 79 GLKCVGAGVRVKKIGPVRVKVYAVALYVDANGAKAAND 116
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7S1DPI2_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DPI2_HEMAN) HSP 1 Score: 46.6 bits (109), Expect = 8.740e-5 Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1
Query: 4 LSLMGTGVRVKKI-GPVAVNVYAVGLYVDE-------KRAANELAAHK 123
L LMG G R KKI GPVAVNVYA+G+YVD+ K A++E AA K
Sbjct: 29 LELMGCGERKKKIVGPVAVNVYAIGMYVDQGPAIVAGKGASSEAAAAK 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72548.14924.1 >prot_H-elongata_contig72548.14924.1 ID=prot_H-elongata_contig72548.14924.1|Name=mRNA_H-elongata_contig72548.14924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp MGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAHK*back to top mRNA from alignment at H-elongata_contig72548:83..208- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72548.14924.1 ID=mRNA_H-elongata_contig72548.14924.1|Name=mRNA_H-elongata_contig72548.14924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig72548:83..208- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72548:83..208- >mRNA_H-elongata_contig72548.14924.1 ID=mRNA_H-elongata_contig72548.14924.1|Name=mRNA_H-elongata_contig72548.14924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig72548:83..208- (Himanthalia elongata Himel1 dioecious)back to top |