mRNA_H-elongata_contig11934.1489.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11934.1489.1
Unique NamemRNA_H-elongata_contig11934.1489.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: D7FTE9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE9_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 1.530e-122
Identity = 171/220 (77.73%), Postives = 197/220 (89.55%), Query Frame = 2
Query:    2 AKLFPGLPFAAEESDEQAMVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVVRILGV 661
            AK+ PGLPFAAEESDEQAM+PGVPQ+RI+  G + AE YLALDPVDGTTNFACGGPDWGV AAVV+RD GPTHGV+YLP   ++VEAA GHGCR+NGE+I  R+GQVL++ +V AE+GKFVPDDRLQRLLGLV+H MG+RNLFSSTGNTAD+L+GVHGAWVHLKGGSVWDFAAG+LAV+EAGGF CDLQG PLKWDKL MEVV AANE+IA+DVV +L +
Sbjct:   89 AKILPGLPFAAEESDEQAMIPGVPQARINPQGLVEAEAYLALDPVDGTTNFACGGPDWGVAAAVVQRDTGPTHGVLYLPGNDLVVEAARGHGCRVNGELIQLRKGQVLRECLVAAEIGKFVPDDRLQRLLGLVHHSMGVRNLFSSTGNTADVLSGVHGAWVHLKGGSVWDFAAGSLAVEEAGGFACDLQGNPLKWDKLHMEVVLAANEEIAKDVVNVLNI 308          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: A0A3D3S434_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3D3S434_9GAMM)

HSP 1 Score: 141 bits (355), Expect = 3.970e-35
Identity = 82/204 (40.20%), Postives = 111/204 (54.41%), Query Frame = 2
Query:   11 FPGLPFAAEESDEQAMVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAAN 622
            FPGLP   EES        VP      DGS     +L  D +DGT  F+ G   WGV  A +  D  P H VI+LP  G+ + AA G GC +NG+ +  R G  L D+++GAE  K +  +    L  LV     +R    S  +T +LL+GV G +++L+GG +WDFAA AL + EAGG  C   G PL WD+++M +V  AN
Sbjct:   56 FPGLPLLTEESPRH----DVP------DGS-----FLVADEIDGTAPFSAGSAQWGVMLAGM--DPAPRHAVIHLPDLGVTLTAARGEGCWLNGDRVTLRGGDALGDALLGAEFNKRLRPEEWAWLQRLVGATRAVRATACSAASTHELLSGVTGLYINLRGGRIWDFAAPALIICEAGGQTCAPDGGPLVWDRVEMGLVAGAN 242          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: A0A2E0HMM3_9GAMM (Uncharacterized protein n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A2E0HMM3_9GAMM)

HSP 1 Score: 132 bits (333), Expect = 4.890e-32
Identity = 79/207 (38.16%), Postives = 114/207 (55.07%), Query Frame = 2
Query:   11 FPGLPFAAEESDEQAMVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQI 631
            FP LP   EES E   +P  P              +L  D +DGT  F+ G  DWGV  A+V  + GP+HGV+ LP +G++V AA G GC ING+ +    G     ++V  ++ + +   + QRL  L   C G+R+ + +  +T +LLAG  G +V+  GG +WDFA  ALAV+EAGG V    G  L WD++ M +V  A+E +
Sbjct:   69 FPDLPRVTEESAEHH-IPRPP--------------FLVADELDGTAPFSHGLGDWGVMLALVD-EAGPSHGVMVLPDRGVLVRAARGQGCVINGQPVALGPGDDPAATLVAMDLNRQLQPAQWQRLQKLAAACQGVRSHYCAAVSTYELLAGHLGLYVNCIGGRIWDFAVPALAVREAGGCVAAPAGGGLVWDRVPMGLVATADESL 259          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: A0A7S4DFU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFU3_HETAK)

HSP 1 Score: 126 bits (316), Expect = 3.510e-31
Identity = 64/126 (50.79%), Postives = 86/126 (68.25%), Query Frame = 2
Query:  311 EGQVLKDSIVGAEMGKFVPDDRLQRLLGLVN---------HCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVVRILGV 661
            E + L D +VGAE+   + + RL RL  L+            +G+RNL SS GN  DLL G  GA+VHL+G SVWD AAGALAV+EAGGF CDL+G+PL+WD+LK+E V A +E +A+++V  LG+
Sbjct:    9 EARRLADVLVGAEVHPLIEEGRLHRLARLMTGRHPAPGGARALGVRNLSSSVGNLVDLLEGHTGAFVHLRGASVWDLAAGALAVEEAGGFCCDLRGRPLRWDRLKVECVMAVSEGLAREIVAALGI 134          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: A0A2M6WZM3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Andersenbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_54_11 TaxID=1974485 RepID=A0A2M6WZM3_9BACT)

HSP 1 Score: 124 bits (310), Expect = 7.200e-29
Identity = 70/217 (32.26%), Postives = 118/217 (54.38%), Query Frame = 2
Query:   11 FPGLPFAAEESDEQAMVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRK-GIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVVRILG 658
            FPG+P   EE  E+ ++PG                Y  LDP+DGT  +  G P+WG   + ++ D  P  GVIY+P +  ++V A  G+GC +NG+ +  R  +    +I+  E+G + PD+   +L  L      +     +  +  DL+      +++ +   +WDFAAGA+AV+E GG VC+L G+PL+W+++ M  +FA ++ +A +VV +L 
Sbjct:   57 FPGIPILGEEQ-EKPVIPG--------------PTYFVLDPIDGTIPYNAGFPNWGTIVSYMQ-DGQPHAGVIYMPEQTSLIVTAERGNGCYLNGQRVVPRPARPRSQAIICVEIGPWTPDEAWPQLNRLRKIGRWLGGSGFAAASLVDLITQRGDLYLNFRA-KIWDFAAGAVAVQEIGGSVCNLNGEPLQWNQIDMTALFAHDQSLANEVVALLA 256          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: A0A554J7S9_9BACT (Myo-inositol-1(Or 4)-monophosphatase n=1 Tax=Parcubacteria group bacterium Gr01-1014_106 TaxID=2017196 RepID=A0A554J7S9_9BACT)

HSP 1 Score: 119 bits (297), Expect = 5.220e-27
Identity = 75/216 (34.72%), Postives = 114/216 (52.78%), Query Frame = 2
Query:   32 AEESDEQAMVPGV-------PQSRIDADGSINAEVY----LALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVV 646
            A E D ++   G+       P+  + A+   NA          DP DGTT +     ++GVT   +R D  P  GV+Y P+ G M+ A   HGC + G+ I  R  + L  +++G ++G +     L+ L      CM  R+  ++     +LL G  GA+  L    +WD AAGALAV+EAGG VC   GQPL+W+ L+M+ + AAN+Q+A+ V+
Sbjct:   40 ATEGDRRSQELGIRLIHAQMPEELVIAEEQANASSVPPNCTVFDPCDGTTIYYNNYSEFGVTLCTLR-DGRPYAGVMYFPKDGTMISAVRTHGCFMKGKRIRLRHDRPLDKTVIGTDIGPWTIHSVLEPLSQ--RFCM--RSSLAAIHGFRELLRGQSGAYYSLNIAKIWDVAAGALAVQEAGGIVCGPDGQPLQWNSLRMDWIAAANQQLAECVL 250          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: UPI001FB00010 (inositol monophosphatase n=1 Tax=Leptospira perolatii TaxID=2023191 RepID=UPI001FB00010)

HSP 1 Score: 112 bits (280), Expect = 1.130e-24
Identity = 61/216 (28.24%), Postives = 107/216 (49.54%), Query Frame = 2
Query:    5 KLFPGLPFAAEESDEQAMVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVVRI 652
            K F G+P   EE + +  +P               E  +  D +DG+  F+ G P++ +  + +     P  G IY P    ++ A  G G  +NGE I+ +  + L  S+V  E+   + D   + +  +    M  R L ++     +LL G    +++L G  +WDFAAGA+AV+EAGG + +L G P KWD+++M  + + +  + + V+R+
Sbjct:   52 KEFSGIPLVLEEQENKEPLP---------------ETCIVCDELDGSALFSRGIPEFSIVLSYIENKE-PKVGCIYFPASATIILAEKGKGASLNGEKISLQRSKPLSHSLVSLEINNTLLDGHFEWIRNVSKEAMASRALGATGAGFKELLEGKTDIFLNLNGAKIWDFAAGAVAVREAGGLLVNLDGNPQKWDRVRMSSIISRDGDLLEQVLRL 251          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: V6H9L8_9LEPT (Inositol monophosphatase family protein n=1 Tax=Leptospira inadai serovar Lyme str. 10 TaxID=1049790 RepID=V6H9L8_9LEPT)

HSP 1 Score: 110 bits (275), Expect = 6.400e-24
Identity = 64/214 (29.91%), Postives = 105/214 (49.07%), Query Frame = 2
Query:   11 FPGLPFAAEESDEQAMVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVVRI 652
            F G+P   EE +    +P                 Y+  D +DGT  F+ G  ++ V  A V  D  P  G IY P    +V +  G G  ++   I FRE   L  S+V  E+   + ++    +  +V + +  R+L ++     +LL G    +++  G  VWDFAAGA+A++EAGG + + +G+PL+WDK++M  V   +  +A  V R+
Sbjct:   60 FSGIPIVLEEQENSEPLP---------------TSYIVCDELDGTALFSRGMSEFSVIMAYVE-DGKPVAGCIYFPAMASIVLSERGKGTTVDDHKIVFREKSDLSHSVVSLEINNTLTNEDFSWIANVVKNSLASRSLAATGAGFRELLLGKTDLFLNFNGAKVWDFAAGAVAIEEAGGILLNKEGKPLEWDKIRMSGVICKDSSLASSVFRL 257          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: T0GJC5_9LEPT (Inositol monophosphatase family protein n=2 Tax=Leptospira TaxID=171 RepID=T0GJC5_9LEPT)

HSP 1 Score: 108 bits (269), Expect = 4.060e-23
Identity = 65/214 (30.37%), Postives = 103/214 (48.13%), Query Frame = 2
Query:   11 FPGLPFAAEESDEQAMVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVVRI 652
            F G+P   EE +    +P                 Y+  D +DGTT F+ G  ++ V  A V     P  G IY P  G +V +  G G  ++G  + F     L  SIV  E+   + D+    +  +V + +  R+L ++     +LL G    +++  G  VWDFAAGA+AV+EAGG +   +G+PL+WDK++M  V   +  +   V R+
Sbjct:   60 FSGIPIILEEQENSEPLP---------------TSYIVCDELDGTTLFSRGMSEFSVIMAYVEAGK-PVAGCIYFPATGSIVLSERGKGTTVDGRKVFFFGESDLSRSIVSLEINNTLADEDFVWIANVVKNSLASRSLAATGAGFRELLLGKTDLFLNFNGAKVWDFAAGAIAVEEAGGILLSKEGRPLEWDKIRMSGVICKDSGLISSVFRL 257          
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Match: A0A2N0A0A8_9LEPT (Inositol monophosphatase n=2 Tax=Leptospira TaxID=171 RepID=A0A2N0A0A8_9LEPT)

HSP 1 Score: 105 bits (262), Expect = 3.750e-22
Identity = 63/216 (29.17%), Postives = 103/216 (47.69%), Query Frame = 2
Query:    5 KLFPGLPFAAEESDEQAMVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRDVGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMGKFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSVWDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVVRI 652
            K FPG+P   EE +     P               E ++  D +DGTT F+ G  ++ V  A V     P  G IY P     + +  G G  IN + I  ++G  L  S++  E+     D+  + +     + +  R L ++     +LL G    +++L G  +WDFAAG LA++EAGG   D  G PLKWD+++M  + + +  + ++V R+
Sbjct:   58 KEFPGIPLVMEEQNNHEPFP---------------ETFIVCDELDGTTLFSRGIKEFSVILAYVENG-SPQVGCIYFPALDTYLISQRGVGTFINEKKILLKKGGSLDRSVLSLEINNTFQDEDYRWIANASKNTLATRALAATGAGFLELLEGKTDLFMNLSGAKIWDFAAGVLALEEAGGIALDKIGNPLKWDRIRMSALLSRDRDLLKEVYRL 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11934.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTE9_ECTSI1.530e-12277.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3D3S434_9GAMM3.970e-3540.20Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A2E0HMM3_9GAMM4.890e-3238.16Uncharacterized protein n=1 Tax=Pseudomonadales ba... [more]
A0A7S4DFU3_HETAK3.510e-3150.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2M6WZM3_9BACT7.200e-2932.26Uncharacterized protein n=1 Tax=Candidatus Anderse... [more]
A0A554J7S9_9BACT5.220e-2734.72Myo-inositol-1(Or 4)-monophosphatase n=1 Tax=Parcu... [more]
UPI001FB000101.130e-2428.24inositol monophosphatase n=1 Tax=Leptospira perola... [more]
V6H9L8_9LEPT6.400e-2429.91Inositol monophosphatase family protein n=1 Tax=Le... [more]
T0GJC5_9LEPT4.060e-2330.37Inositol monophosphatase family protein n=2 Tax=Le... [more]
A0A2N0A0A8_9LEPT3.750e-2229.17Inositol monophosphatase n=2 Tax=Leptospira TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11934contigH-elongata_contig11934:484..3598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue2.1e-90
Seed eggNOG ortholog2880.D7FTE9
EggNOG free text desc.Inositol-1-monophosphatase
EggNOG OGsCOG0483@1,KOG2951@2759
Ec32 ortholog descriptionInositol monophosphatase
Ec32 orthologEc-21_001090.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1386
Cds size618
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.1094458-UTR-H-elongata_contig11934:483..5381622929698.1094458-UTR-H-elongata_contig11934:483..538Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11934 484..538 +
1691679123.1167288-UTR-H-elongata_contig11934:483..5381691679123.1167288-UTR-H-elongata_contig11934:483..538Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11934 484..538 +
1622929698.2278054-UTR-H-elongata_contig11934:2885..35981622929698.2278054-UTR-H-elongata_contig11934:2885..3598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11934 2886..3598 +
1691679123.1919966-UTR-H-elongata_contig11934:2885..35981691679123.1919966-UTR-H-elongata_contig11934:2885..3598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11934 2886..3598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.1245427-CDS-H-elongata_contig11934:538..5411622929698.1245427-CDS-H-elongata_contig11934:538..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 539..541 +
1691679123.1288297-CDS-H-elongata_contig11934:538..5411691679123.1288297-CDS-H-elongata_contig11934:538..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 539..541 +
1622929698.1363614-CDS-H-elongata_contig11934:919..10391622929698.1363614-CDS-H-elongata_contig11934:919..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 920..1039 +
1691679123.1363368-CDS-H-elongata_contig11934:919..10391691679123.1363368-CDS-H-elongata_contig11934:919..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 920..1039 +
1622929698.1509295-CDS-H-elongata_contig11934:1302..14431622929698.1509295-CDS-H-elongata_contig11934:1302..1443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 1303..1443 +
1691679123.1445572-CDS-H-elongata_contig11934:1302..14431691679123.1445572-CDS-H-elongata_contig11934:1302..1443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 1303..1443 +
1622929698.165248-CDS-H-elongata_contig11934:1721..18371622929698.165248-CDS-H-elongata_contig11934:1721..1837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 1722..1837 +
1691679123.1528454-CDS-H-elongata_contig11934:1721..18371691679123.1528454-CDS-H-elongata_contig11934:1721..1837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 1722..1837 +
1622929698.1901977-CDS-H-elongata_contig11934:2066..21721622929698.1901977-CDS-H-elongata_contig11934:2066..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 2067..2172 +
1691679123.1614-CDS-H-elongata_contig11934:2066..21721691679123.1614-CDS-H-elongata_contig11934:2066..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 2067..2172 +
1622929698.204686-CDS-H-elongata_contig11934:2424..24871622929698.204686-CDS-H-elongata_contig11934:2424..2487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 2425..2487 +
1691679123.1726851-CDS-H-elongata_contig11934:2424..24871691679123.1726851-CDS-H-elongata_contig11934:2424..2487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 2425..2487 +
1622929698.216053-CDS-H-elongata_contig11934:2816..28851622929698.216053-CDS-H-elongata_contig11934:2816..2885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 2817..2885 +
1691679123.185054-CDS-H-elongata_contig11934:2816..28851691679123.185054-CDS-H-elongata_contig11934:2816..2885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11934 2817..2885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11934.1489.1prot_H-elongata_contig11934.1489.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11934 539..2885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11934.1489.1

>prot_H-elongata_contig11934.1489.1 ID=prot_H-elongata_contig11934.1489.1|Name=mRNA_H-elongata_contig11934.1489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MVPGVPQSRIDADGSINAEVYLALDPVDGTTNFACGGPDWGVTAAVVRRD
VGPTHGVIYLPRKGIMVEAATGHGCRINGEVINFREGQVLKDSIVGAEMG
KFVPDDRLQRLLGLVNHCMGIRNLFSSTGNTADLLAGVHGAWVHLKGGSV
WDFAAGALAVKEAGGFVCDLQGQPLKWDKLKMEVVFAANEQIAQDVVRIL
GVAVA*
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mRNA from alignment at H-elongata_contig11934:484..3598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11934.1489.1 ID=mRNA_H-elongata_contig11934.1489.1|Name=mRNA_H-elongata_contig11934.1489.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3115bp|location=Sequence derived from alignment at H-elongata_contig11934:484..3598+ (Himanthalia elongata Himel1 dioecious)
AGCTAAACTATTTCCCGGCCTTCCCTTCGCGGCCGAGGAGTCTGATGAGC AGGCAATGGTGAGGATTAGCCTCTAACTGACTGGATGTTGACTGACAGTG CAGGTACTCTATAAACGAAAATTAATCGACAACGTCCGGTAATCCTACCG TTATGTGCACTGCTTGTTTTTCCTCCTGTGTTGAACTTCAACGCGGACAT CGAACATATGATATAACCCGAGGACGTCTTTCACGAAAGATGTTCTCCAC CGCGGCGCTTCCTGGGTACCTCTCCCTTTTACCGTCCTCGTGGTTCAGGC CCTAGACCATTGAGTAAATTCTATCGAACTGGTGATGCTTCGCTGTCAGT TGGTCGTCTTTCAATGACCCCCCCACCCCCTGTTAACCTTAACAAACGCC ACCCTCGCGCTCCTGATCGTATGAAACGTCGAGAAGGTTCCCGGGGTTCC TCAATCCCGAATCGATGCCGACGGTTCCATTAACGCGGAAGTGTACCTCG CCCTCGACCCCGTCGACGGCACCACCAACTTCGCCTGCGGGGGGCCAGAT TGGGGGGTGAGAGCGCCCTGTTGCGATTGTCGCCCTTTTTTGACGCATAT CAAACAGACACTACCTTGTGTGACATGGTTAGCTCAATTCATGCAGCTTC TTTGGTTTAAGGTGCTGAAACTATAGCACTAGCGGTACACGGTTGTATGC TTTCAACAAAACGCTTGAGCACAGCCCAGGTCGCCGCCGGGTTGATATTT CCTCGGAAGTTAACGAACCTCTGTGGTGCCGAATTGGATTCAGCAGTTCA GTGTATTTGACTCCCGCAGGTGACCGCGGCGGTAGTCCGTCGGGATGTGG GGCCAACACACGGCGTCATATATCTCCCCAGAAAAGGGATCATGGTGGAG GCGGCAACCGGCCACGGATGCAGAATAAATGGCGAGGTTATAAACTTCCG AGAAGGCCAGGTAAAATATGGATATAATCTTCCGCGACAGTTTTACCCTC GAGGTTTGGAGCATGACTGCTTAACACTTTGGTCACTATTTATCGACTCT CATATTTTTCTCATAAAATCCAGGAGTAATACTGTTAAGGGGCTGTTACG CTGTCGTGCCAAGTCCATCATGTCCTCAATAACGTTTTGGACCCTTCTAC ATGGAGTAAGGACGTGGTCGGGAAGGGCGAACCCGATGCTATGTTTCTCT AGCTCCTTTGTGCCCTTCGTTCCCTCTATTTTTCTTAGGTCCTCAAAGAT AGCATCGTGGGAGCAGAGATGGGGAAATTTGTGCCAGACGATCGCCTACA GCGCCTCTTGGGGCTAGTGAACCATTGCATGGGCATCCGCAATCTTTTCT CAAGGTATCCACGAATTGCAAGGTGTTGTGTTGCCTTTCGCGAAGAACCC AGCTCAGGAAGACTCGTCGAAGCTGCAGCAAAACCCACATTAGAGAGGGG TAGGGTAGACATGAAAATATCATCGGCAGCGAAGAGAGCATGCGCGCACC TTCTGGAGCACCTCCTTTGTCTACGGGCGTCTCAGTGCCCATAAAACGTT TTAATGCGTTATATTTTCGTCTGTATGTTACAGCACGGGAAACACGGCAG ATCTTTTAGCAGGAGTACATGGAGCGTGGGTGCACCTCAAGGGAGGTTCC GTGTGGGATTTTGCGGCTGGAGCCCTGGCCGTCAAGGAGGTATAGCGCCT TGAATGCTTTCACATTCAAATTGCAGGAAAAGAAGCTCTGGCTTTATGAG TGTTGGTTCTCTAGGGATCAACTTGCCATTCCTAAAAACAACATCCCACT TAGATTGCCGTCGGCTACGCAGGAGTCACCTTAACGTATTTTTACTATTT AGGTTTCTGTTTTTCCAATTCTAAGCACTCCACTGTACAGCAGCAAAGCC CGAAATCCTCTCGCTTGTACTTCATGTTATGTTTTCCAAAGGCTGGTGGA TTCGTCTGTGATCTTCAAGGACAACCTTTAAAGTGGGACAAGCTCAAAAT GGAGGTGAGTAGCAGCGAAATTATTATGGTTTCACGCTGCGGGTGTCTTC TCTCCCTTGCTGCAACATGAGTACAATAGTCCAACCGTTTCCGTCCGTAC TTCCTGCTTTGTAGGCAAAGAACGCGAGCGCGACTTTGCAGCTGACAAAG TCATGAATCCGCCAGCGCGGCCGTCCAGGGTGGGTGTACGTTCTTTTAAC TGGTTGTACGTTCTGATGCTCTTTTCTGTCGCTATCGAATATGAAGTTGT ATTCTTCGTAAATAATCCAACATTCTTCACGTGTGTTATTGCGTCCAAGT GTTTCGTTGTATAACACGTCCGCCGTATTGCAGGTGGTATTCGCGGCCAA CGAGCAAATTGCTCAGGACGTGGTAAGAATTCTTGGCGTCGCAGTGGCTT GAGTGTCAACGGCATCTTCCACTATGTAATTAAGACTGAGATATCCCGTC GTGGGGGGATAACGACCCACACCTTTGGCATGTGGAGAATCGCTATGCGT AGTTTTTGCATGCACCAGAAGACCCGTATGCAATAGCTCCAGCACAAGAA TGTGTTTTAATATTCTCTATTGTTAGCACCTGGGTTACATCCCGTGCGCA GACCCAAACGTCTCAGGCTCGGCGACGTTTCCCTCTCGACCTATAGTACC TCGAGACCCCCAAGATTGATTTGCTCGGTAATTCAACCGCTTCCTCTTTG CAATTACTGATGTACCGAATCGCCGGGCAGTACTATGCCTCTTACTTCAC TCGTTTAAATGTATACGTGTTGTCCATCAAGAACGGTCCGGAATATTCGA CTTCGATCCCATACATCAAGTAAGCGTCCCGATCGATTGCACTGGCCGCG ACAATATGCTGGAATGATGCGAGCTTAGTAAGCGTTCCGACTTTGGTTCC AACGATCTGTATTTTGGTAAGACCGACCCCATCGTACTCTTGAATGGTGT CAACGTCATTTCTGTCGATATTTTTAATTAGCAAGTATGGATATTCTACT GCCTGGGTCAACGTTCTCAACGTTTTTGTTTTAAAAACCTTAAACTCATT CCAACCCTCCGAACATCCTTACCTTCTTAGCGCCGTGAAAGGTGCAGTCC AGGGGACTAACTATC
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Coding sequence (CDS) from alignment at H-elongata_contig11934:484..3598+

>mRNA_H-elongata_contig11934.1489.1 ID=mRNA_H-elongata_contig11934.1489.1|Name=mRNA_H-elongata_contig11934.1489.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig11934:484..3598+ (Himanthalia elongata Himel1 dioecious)
ATGATGGTTCCCGGGGTTCCTCAATCCCGAATCGATGCCGACGGTTCCAT
TAACGCGGAAGTGTACCTCGCCCTCGACCCCGTCGACGGCACCACCAACT
TCGCCTGCGGGGGGCCAGATTGGGGGGTTCCCGGGGTTCCTCAATCCCGA
ATCGATGCCGACGGTTCCATTAACGCGGAAGTGTACCTCGCCCTCGACCC
CGTCGACGGCACCACCAACTTCGCCTGCGGGGGGCCAGATTGGGGGGTGA
CCGCGGCGGTAGTCCGTCGGGATGTGGGGCCAACACACGGCGTCATATAT
CTCCCCAGAAAAGGGATCATGGTGGAGGCGGCAACCGGCCACGGATGCAG
AATAAATGGCGAGGTTATAAACTTCCGAGAAGGCCAGGTGACCGCGGCGG
TAGTCCGTCGGGATGTGGGGCCAACACACGGCGTCATATATCTCCCCAGA
AAAGGGATCATGGTGGAGGCGGCAACCGGCCACGGATGCAGAATAAATGG
CGAGGTTATAAACTTCCGAGAAGGCCAGGTCCTCAAAGATAGCATCGTGG
GAGCAGAGATGGGGAAATTTGTGCCAGACGATCGCCTACAGCGCCTCTTG
GGGCTAGTGAACCATTGCATGGGCATCCGCAATCTTTTCTCAAGGTCCTC
AAAGATAGCATCGTGGGAGCAGAGATGGGGAAATTTGTGCCAGACGATCG
CCTACAGCGCCTCTTGGGGCTAGTGAACCATTGCATGGGCATCCGCAATC
TTTTCTCAAGCACGGGAAACACGGCAGATCTTTTAGCAGGAGTACATGGA
GCGTGGGTGCACCTCAAGGGAGGTTCCGTGTGGGATTTTGCGGCTGGAGC
CCTGGCCGTCAAGGAGCACGGGAAACACGGCAGATCTTTTAGCAGGAGTA
CATGGAGCGTGGGTGCACCTCAAGGGAGGTTCCGTGTGGGATTTTGCGGC
TGGAGCCCTGGCCGTCAAGGAGGCTGGTGGATTCGTCTGTGATCTTCAAG
GACAACCTTTAAAGTGGGACAAGCTCAAAATGGAGGCTGGTGGATTCGTC
TGTGATCTTCAAGGACAACCTTTAAAGTGGGACAAGCTCAAAATGGAGGT
GGTATTCGCGGCCAACGAGCAAATTGCTCAGGACGTGGTAAGAATTCTTG
GCGTCGCAGTGGCTTGAGTGGTATTCGCGGCCAACGAGCAAATTGCTCAG
GACGTGGTAAGAATTCTTGGCGTCGCAGTGGCTTGA
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