mRNA_H-elongata_contig71261.14787.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71261.14787.1
Unique NamemRNA_H-elongata_contig71261.14787.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig71261.14787.1 vs. uniprot
Match: A0A8J2QTV3_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2QTV3_9NEOP)

HSP 1 Score: 70.1 bits (170), Expect = 3.290e-11
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:    4 MAITAHYIKEGDTEVSVTTMSCVECPPSHTAENLAKAAKDCMENYEISESAITFMTDTASNIKKAGCQLLQQEWHGCAAHVIELSIKPILNEPS-----------IKATLAKHNKVVTHLHASTKSRDKLREFQK 375
            +++TAHYI +   ++    +S  E    HTAEN+A A +D M+ +EIS   +T +TD A+ +KKA  + L +  H C AH + L++K  L + +           ++  L K   +V+H   STK+   L + Q+
Sbjct:  200 ISLTAHYIYQY--KLKSVVISTSEIQLHHTAENIAMAIQDVMDQWEISSKVVTIVTDNAAAMKKAVSECLNKRNHFCVAHTLNLAVKDCLEKETFDLAGNTSNCQLQQLLGKCRAIVSHFKHSTKASYALLKMQE 332
[Close]
BLAST of mRNA_H-elongata_contig71261.14787.1 vs. uniprot
Match: UPI00084E62C0 (zinc finger BED domain-containing protein 1-like n=2 Tax=Trachymyrmex zeteki TaxID=64791 RepID=UPI00084E62C0)

HSP 1 Score: 58.2 bits (139), Expect = 4.650e-7
Identity = 37/136 (27.21%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:    1 YMAITAHYIKEGDTEVSVTTMSCVECPPSHTAENLAKAAKDCMENYEISESAITFMTDTASNIKKAGCQLLQQEWHGCAAHVIELSIKPILNEPSIKATLAKHNKVVTHLHASTKSRDKLREFQKVSLPSPFLRIR 408
            + AITAHY+ +   ++    + C+     HTAEN+++  KDC++N+ + +  I  +TD A+N + A  +L       C  H + L ++  L E  I     K   +V +   S+ +  KL+  Q+  +  P L+++
Sbjct:  241 FTAITAHYL-DSKFQLKSILLECLSFHSRHTAENISRCLKDCVQNFNLEDKIICCVTDNAAN-EVAAIRLCNWRHLPCFVHSLNLVVQQSLKE--ISNVTVKVKSIVEYFERSSYALSKLQSMQE-QMKLPKLKLK 371
[Close]
BLAST of mRNA_H-elongata_contig71261.14787.1 vs. uniprot
Match: A0A8C5PB87_9ANUR (Uncharacterized protein n=6 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PB87_9ANUR)

HSP 1 Score: 56.2 bits (134), Expect = 2.200e-6
Identity = 33/128 (25.78%), Postives = 60/128 (46.88%), Query Frame = 1 
Query:    1 YMAITAHYIKEGDTEVSVTTMSCVECP---PSHTAENLAKAAKDCMENYEISESAITFMTDTASNIKKAGCQLLQQEWHGCAAHVIELSIKPILN-EPSIKATLAKHNKVVTHLHASTKSRDKLREFQ 372
            Y+ +T HYI E    +    +S V        HTA   ++   +    +   E  I F T   +N      ++L  +WHGCAAH+++L+I   L+ + ++K  +   + +    H+ST  +  L ++Q
Sbjct:  196 YLVLTIHYISESSWVMQSRCLSVVNLENLEADHTARKTSEIISNEFAKHGFGEEKILFATTDTTNTMPCTAKILDIQWHGCAAHILQLTINAALDVQRTVKNLIGCLHYIAGFFHSSTVGQAVLTKYQ 323
[Close]
BLAST of mRNA_H-elongata_contig71261.14787.1 vs. uniprot
Match: A0A8M6Z2R9_DANRE (zinc finger BED domain-containing protein 1-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M6Z2R9_DANRE)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-5
Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:    1 YMAITAHYIKEGDTEVSVTTMSCVECPPSHTAENLAKAAKDCMENYEISESAITFMT-DTASNIKKAGCQLLQQEWHGCAAHVIELSIKPILNEPSIKATLA-----KHNKVVTHLHASTKSRDKLREFQK-VSLPSPFL 399
            YM++T HYI E D ++    +     P +HTAE LA+A  D M++++I  S I+ +T D  +NI  A  + L   W  C  H + +++   L +   K   A       N   +H   S K R +LR+ Q+ ++LP   L
Sbjct:  186 YMSVTVHYISE-DWKLEAKCLETTFIPENHTAEVLAEALSDAMQDWDIEPSKISCITTDNGANIV-AAIRRLGWPWLNCFGHNLNVAVNYSLQKEKTKTDRALGICRNINGAFSH---SWKRRQELRKAQEQLNLPQRML 320
[Close]
BLAST of mRNA_H-elongata_contig71261.14787.1 vs. uniprot
Match: A0A8M9PYK6_DANRE (zinc finger BED domain-containing protein 1-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M9PYK6_DANRE)

HSP 1 Score: 53.9 bits (128), Expect = 1.400e-5
Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:    1 YMAITAHYIKEGDTEVSVTTMSCVECPPSHTAENLAKAAKDCMENYEISESAITFMT-DTASNIKKAGCQLLQQEWHGCAAHVIELSIKPILNEPSIKATLA-----KHNKVVTHLHASTKSRDKLREFQK-VSLPSPFL 399
            YM++T HYI E D ++    +     P +HTAE LA+A  D M++++I  S I+ +T D  +NI  A  + L   W  C  H + +++   L +   K   A       N   +H   S K R +LR+ Q+ ++LP   L
Sbjct:  186 YMSVTVHYISE-DWKLEAKCLETTFIPENHTAEVLAEALSDAMQDWDIEPSKISCITTDNGANIV-AAIRRLGWPWLNCYGHNLNVAVNYSLQKEKTKTDRALGICRNINGAFSH---SWKRRQELRKAQEQLNLPQRML 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71261.14787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A8J2QTV3_9NEOP3.290e-1131.85(African queen) hypothetical protein n=1 Tax=Danau... [more]
UPI00084E62C04.650e-727.21zinc finger BED domain-containing protein 1-like n... [more]
A0A8C5PB87_9ANUR2.200e-625.78Uncharacterized protein n=6 Tax=Leptobrachium leis... [more]
A0A8M6Z2R9_DANRE1.200e-531.43zinc finger BED domain-containing protein 1-like n... [more]
A0A8M9PYK6_DANRE1.400e-531.43zinc finger BED domain-containing protein 1-like n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71261contigH-elongata_contig71261:361..801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score81.3
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog7370.XP_005189770.1
EggNOG free text desc.Protein of unknown function (DUF 659)
EggNOG OGs39TTD@33154,3BCXB@33208,3CYBV@33213,3SUYM@50557,425F3@6656,456H2@7147,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelDiptera
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size438
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.5681994-UTR-H-elongata_contig71261:360..3631622931112.5681994-UTR-H-elongata_contig71261:360..363Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71261 361..363 +
1691679703.2236156-UTR-H-elongata_contig71261:360..3631691679703.2236156-UTR-H-elongata_contig71261:360..363Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71261 361..363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.5862563-CDS-H-elongata_contig71261:363..8011622931112.5862563-CDS-H-elongata_contig71261:363..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71261 364..801 +
1691679703.2337224-CDS-H-elongata_contig71261:363..8011691679703.2337224-CDS-H-elongata_contig71261:363..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71261 364..801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71261.14787.1prot_H-elongata_contig71261.14787.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71261 364..801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71261.14787.1

>prot_H-elongata_contig71261.14787.1 ID=prot_H-elongata_contig71261.14787.1|Name=mRNA_H-elongata_contig71261.14787.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MAITAHYIKEGDTEVSVTTMSCVECPPSHTAENLAKAAKDCMENYEISES
AITFMTDTASNIKKAGCQLLQQEWHGCAAHVIELSIKPILNEPSIKATLA
KHNKVVTHLHASTKSRDKLREFQKVSLPSPFLRIRACIDAARQLF*
back to top

mRNA from alignment at H-elongata_contig71261:361..801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71261.14787.1 ID=mRNA_H-elongata_contig71261.14787.1|Name=mRNA_H-elongata_contig71261.14787.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig71261:361..801+ (Himanthalia elongata Himel1 dioecious)
TATATGGCCATCACAGCCCACTACATCAAGGAGGGTGACACTGAGGTCTC
CGTGACGACCATGTCGTGTGTTGAGTGCCCGCCCTCCCACACGGCGGAGA
ACCTAGCAAAGGCAGCGAAGGACTGCATGGAGAATTATGAGATCTCGGAG
AGCGCCATCACCTTCATGACGGATACGGCCTCAAACATAAAAAAGGCAGG
CTGCCAGCTCTTACAGCAAGAGTGGCACGGCTGCGCCGCGCACGTGATTG
AGCTCTCAATCAAGCCCATCCTGAACGAGCCGTCGATCAAGGCAACTCTT
GCCAAACACAACAAAGTGGTCACGCATCTGCACGCGTCGACCAAGTCGCG
AGACAAGCTCCGGGAATTCCAAAAGGTAAGTCTACCTTCTCCATTTTTAC
GTATACGTGCGTGTATTGATGCAGCTCGGCAGCTCTTTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71261:361..801+

>mRNA_H-elongata_contig71261.14787.1 ID=mRNA_H-elongata_contig71261.14787.1|Name=mRNA_H-elongata_contig71261.14787.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig71261:361..801+ (Himanthalia elongata Himel1 dioecious)
ATGGCCATCACAGCCCACTACATCAAGGAGGGTGACACTGAGGTCTCCGT
GACGACCATGTCGTGTGTTGAGTGCCCGCCCTCCCACACGGCGGAGAACC
TAGCAAAGGCAGCGAAGGACTGCATGGAGAATTATGAGATCTCGGAGAGC
GCCATCACCTTCATGACGGATACGGCCTCAAACATAAAAAAGGCAGGCTG
CCAGCTCTTACAGCAAGAGTGGCACGGCTGCGCCGCGCACGTGATTGAGC
TCTCAATCAAGCCCATCCTGAACGAGCCGTCGATCAAGGCAACTCTTGCC
AAACACAACAAAGTGGTCACGCATCTGCACGCGTCGACCAAGTCGCGAGA
CAAGCTCCGGGAATTCCAAAAGGTAAGTCTACCTTCTCCATTTTTACGTA
TACGTGCGTGTATTGATGCAGCTCGGCAGCTCTTTTGAATGGCCATCACA
GCCCACTACATCAAGGAGGGTGACACTGAGGTCTCCGTGACGACCATGTC
GTGTGTTGAGTGCCCGCCCTCCCACACGGCGGAGAACCTAGCAAAGGCAG
CGAAGGACTGCATGGAGAATTATGAGATCTCGGAGAGCGCCATCACCTTC
ATGACGGATACGGCCTCAAACATAAAAAAGGCAGGCTGCCAGCTCTTACA
GCAAGAGTGGCACGGCTGCGCCGCGCACGTGATTGAGCTCTCAATCAAGC
CCATCCTGAACGAGCCGTCGATCAAGGCAACTCTTGCCAAACACAACAAA
GTGGTCACGCATCTGCACGCGTCGACCAAGTCGCGAGACAAGCTCCGGGA
ATTCCAAAAGGTAAGTCTACCTTCTCCATTTTTACGTATACGTGCGTGTA
TTGATGCAGCTCGGCAGCTCTTTTGA
back to top