mRNA_H-elongata_contig71246.14786.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: D7G2S4_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S4_ECTSI) HSP 1 Score: 369 bits (948), Expect = 1.630e-121 Identity = 183/221 (82.81%), Postives = 198/221 (89.59%), Query Frame = 1
Query: 1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLS------GGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
+ +MV+ E MGTTLRVAGGWVRDKL+GQEQG HQR L++V KMDIDIALDNCMGGDFA +L+RYLS G + R SKVALIASNPEKSKHLETATLRID FWVDFVNLRTESY+QDSRIPSINIGTP ED+FRRDLTINSLFYNVNT TVEDYTGKGTSDLR GLVRTPLPPCETLLDDPLR LRAVRFASRLGF+VH EL++AGRDP+VHEALC KV
Sbjct: 138 LLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRRKSDPGARKRMSKVALIASNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPKVHEALCMKV 358
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: A0A835ZFM7_9STRA (PolyA_pol domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFM7_9STRA) HSP 1 Score: 263 bits (671), Expect = 1.230e-81 Identity = 126/212 (59.43%), Postives = 165/212 (77.83%), Query Frame = 1
Query: 10 MVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
+V++E MGTTLRVAGGWVRDKL+G + + M+ KMD+DIALDNC+G FA ++R+L+ +++ V +++ NPEKSKHLETAT+ + GF +DFVNLRTESY DSRIP++ IGTPE+DA+RRDLTIN+LFYN+NT VED+TG+G +DL G++ TPLP +TLLDDPLRVLR++RFASR F + +LL A +DP VH AL KV
Sbjct: 20 VVEEEAMGTTLRVAGGWVRDKLLGAARCGGEHMVGVDNKMDVDIALDNCLGKGFAETVNRHLAKKGMKSAAVGIVSKNPEKSKHLETATMHLLGFSIDFVNLRTESYTSDSRIPNMGIGTPEDDAYRRDLTINALFYNINTGLVEDFTGRGLTDLAAGVISTPLPAVDTLLDDPLRVLRSIRFASRFNFNMSQDLLMACKDPEVHVALAQKV 231
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: W7TAJ6_9STRA (Poly A polymerase, head domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAJ6_9STRA) HSP 1 Score: 253 bits (646), Expect = 1.000e-79 Identity = 126/212 (59.43%), Postives = 159/212 (75.00%), Query Frame = 1
Query: 10 MVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
+V+DEN+GTTLRVAGGWVRDK++G + +DIDIALDN MG DFA L+ +L+ + V +I++NP KSKHLETAT+R+ F +DFVNLRTE+Y +SRIPS+ IG+PEEDA RRDLTIN+LFYN++T +ED+ G+G D+R+G++RTPLP TLLDDPLRVLRAVRFASRL F + EL+ A DPRVH AL KV
Sbjct: 198 VVKDENLGTTLRVAGGWVRDKVLGHWSADGE--------VDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKV 401
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: A0A4D9CTQ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTQ7_9STRA) HSP 1 Score: 253 bits (646), Expect = 8.770e-77 Identity = 126/212 (59.43%), Postives = 159/212 (75.00%), Query Frame = 1
Query: 10 MVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
+V+DEN+GTTLRVAGGWVRDK++G + +DIDIALDN MG DFA L+ +L+ + V +I++NP KSKHLETAT+R+ F +DFVNLRTE+Y +SRIPS+ IG+PEEDA RRDLTIN+LFYN++T +ED+ G+G D+R+G++RTPLP TLLDDPLRVLRAVRFASRL F + EL+ A DPRVH AL KV
Sbjct: 173 VVKDENLGTTLRVAGGWVRDKVLGHWSADGE--------VDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKV 376
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: A0A8J4PJG3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PJG3_9MYCE) HSP 1 Score: 242 bits (617), Expect = 2.770e-74 Identity = 120/215 (55.81%), Postives = 155/215 (72.09%), Query Frame = 1
Query: 1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
+ +V++ N TTLRVAGGWVRDKL G + SH DIDI LDN MG FA ++ YL Q +T ++ +I SNPE+SKHLETAT++I W+DFVNLR+E+Y + SRIP I IGTP++DA RRDLTINSLFYN+N + VEDYTG G SDL+ G++RTPLPP T LDDPLRV R++RFA+RL F + EL+DA +P + A+ +K+
Sbjct: 97 LMDVVKETNCKTTLRVAGGWVRDKLRGDD--SH----------DIDITLDNMMGESFAELVNNYLGNHQQKTHRIGVIQSNPEQSKHLETATVKIFDMWIDFVNLRSETYTEASRIPEITIGTPKDDALRRDLTINSLFYNINENRVEDYTGNGISDLKMGIIRTPLPPLTTFLDDPLRVFRSIRFATRLYFAIDKELMDAASNPLISNAIKSKI 299
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: Q54BQ2_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54BQ2_DICDI) HSP 1 Score: 243 bits (619), Expect = 4.260e-74 Identity = 118/215 (54.88%), Postives = 155/215 (72.09%), Query Frame = 1
Query: 1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
+ +++D GTTLRVAGGWVRDKL G + DIDI LDN MG FA ++++LS +T ++ +I SNPE+SKHLETAT+++ W+DFVNLR+ESY SRIP I+IGTP +DA RRDLTINSLF+N+N + +ED+TG+G +DLRDG++RTPLP T LDDPLRV R++RFASRL FK+ EL AG DP V +A+ +K+
Sbjct: 82 LMHVIRDSGCGTTLRVAGGWVRDKLRGDDSN------------DIDITLDNMMGEAFAELVNKHLSSKHHQTHRIGVIQSNPEQSKHLETATVKVFDMWIDFVNLRSESYTDTSRIPVISIGTPLQDALRRDLTINSLFFNINENRIEDFTGQGINDLRDGIIRTPLPSLTTFLDDPLRVFRSIRFASRLNFKIDEELFKAGSDPVVKDAIKSKI 284
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: UPI0006449D42 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449D42) HSP 1 Score: 243 bits (621), Expect = 8.570e-74 Identity = 121/215 (56.28%), Postives = 156/215 (72.56%), Query Frame = 1
Query: 1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
+ Q+V+ GTTLRVAGGWVRDKL G + DIDIALDN MG FA +++YL T ++ +I SNP +SKHLETAT+RI W+DFVNLR+E+Y ++SRIP+I IGTP+EDAFRRDLTINSLFYN+N + +ED+TG G +DL G+VRTPLPP T LDDPLRVLR++RFA+RL + + +L++A P+V EAL +KV
Sbjct: 117 LLQVVEKSKCGTTLRVAGGWVRDKLRGDDSS------------DIDIALDNLMGEAFASLVNQYLQDHNQETHRIGVIQSNPSQSKHLETATVRIFDMWIDFVNLRSETYTEESRIPTIQIGTPQEDAFRRDLTINSLFYNINENKIEDFTGNGINDLMCGIVRTPLPPQTTFLDDPLRVLRSIRFATRLYYAIDHKLVEAASSPKVKEALKSKV 319
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: F0ZVA3_DICPU (PolyA_pol domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZVA3_DICPU) HSP 1 Score: 241 bits (615), Expect = 1.600e-73 Identity = 119/215 (55.35%), Postives = 156/215 (72.56%), Query Frame = 1
Query: 1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
+ +V++ N GTTLRVAGGWVRDKL G + DIDI LDN MG FA ++++LSG Q +T ++ +I SNPE+SKHLETAT++I W+DFVNLR+E+Y +SRIP I IGTP ED+ RRDLTINSLFYN+N + +ED+TGK +DL G++RTPLPP T LDDPLRV R++RFASRL FK+ EL++A + V EA+ +K+
Sbjct: 81 LMHVVRNSNCGTTLRVAGGWVRDKLRGDDSN------------DIDITLDNMMGESFAELVNKHLSGKQHQTHRIGVIQSNPEQSKHLETATVKIFDLWIDFVNLRSETYTDNSRIPEIKIGTPLEDSLRRDLTINSLFYNINENKIEDFTGKAITDLNLGIIRTPLPPLTTFLDDPLRVFRSIRFASRLYFKIDQELVEAASNAVVKEAIKSKI 283
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: A0A5J4Z172_PORPP (CCA tRNA nucleotidyltransferase, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z172_PORPP) HSP 1 Score: 241 bits (614), Expect = 1.960e-73 Identity = 121/213 (56.81%), Postives = 149/213 (69.95%), Query Frame = 1
Query: 7 QMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
++V+ N+ TLRVAGGWVRDKL G + +E +DIDIALD +G +FA + YL + ++A+I NP++SKHLETA + + G W+DFVNLRTE Y DSRIP I IGTP EDA RRDLTIN+LFYN+N DTVED+TG G SDL ++RTPL P TLLDDPLR LRA+RF SRL F V +L A DPRVH+AL +KV
Sbjct: 36 EVVEKNNLDVTLRVAGGWVRDKLFGSQ----------MEHVDIDIALDTMLGREFAELANEYLQKHEEERHRIAVIQRNPDQSKHLETARMLMFGLWIDFVNLRTEKYTHDSRIPEIEIGTPFEDAMRRDLTINALFYNINNDTVEDFTGLGISDLEKRIIRTPLHPLTTLLDDPLRALRAIRFTSRLNFSVDPDLYAAMSDPRVHQALLSKV 238
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: J9I5U6_9SPIT (tRNA nucleotidyltransferase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I5U6_9SPIT) HSP 1 Score: 238 bits (607), Expect = 9.470e-73 Identity = 120/213 (56.34%), Postives = 154/213 (72.30%), Query Frame = 1
Query: 7 QMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
Q++++ N+ TTLRVAGGWVRDKL+G+E MDIDIALD+ G +FA ++ L ++ K +I SN EKSKHLETATLRI G +D VNLR+E Y ++SR+P+I+IGTPEEDA+RRDLTINSLFYN+N VED+T +G DL+DG++RTPL P +T LDDPLRV+R VRFA+R FK+ E+ DA +DPRV A KV
Sbjct: 2 QIIKENNLKTTLRVAGGWVRDKLMGKES------------MDIDIALDDMFGEEFAKMINEKLHPDGAK--KFGVIKSNSEKSKHLETATLRIHGVMIDLVNLRSEKYTEESRVPTIDIGTPEEDAYRRDLTINSLFYNINEQKVEDFTQRGIQDLKDGIIRTPLEPLQTFLDDPLRVMRTVRFATRFDFKILDEIYDAAKDPRVQVAFSQKV 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71246.14786.1 >prot_H-elongata_contig71246.14786.1 ID=prot_H-elongata_contig71246.14786.1|Name=mRNA_H-elongata_contig71246.14786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp MVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMback to top mRNA from alignment at H-elongata_contig71246:696..2830- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71246.14786.1 ID=mRNA_H-elongata_contig71246.14786.1|Name=mRNA_H-elongata_contig71246.14786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2135bp|location=Sequence derived from alignment at H-elongata_contig71246:696..2830- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71246:696..2830- >mRNA_H-elongata_contig71246.14786.1 ID=mRNA_H-elongata_contig71246.14786.1|Name=mRNA_H-elongata_contig71246.14786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig71246:696..2830- (Himanthalia elongata Himel1 dioecious)back to top |