mRNA_H-elongata_contig71246.14786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71246.14786.1
Unique NamemRNA_H-elongata_contig71246.14786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: D7G2S4_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S4_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 1.630e-121
Identity = 183/221 (82.81%), Postives = 198/221 (89.59%), Query Frame = 1
Query:    1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLS------GGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            + +MV+ E MGTTLRVAGGWVRDKL+GQEQG HQR L++V KMDIDIALDNCMGGDFA +L+RYLS      G + R SKVALIASNPEKSKHLETATLRID FWVDFVNLRTESY+QDSRIPSINIGTP ED+FRRDLTINSLFYNVNT TVEDYTGKGTSDLR GLVRTPLPPCETLLDDPLR LRAVRFASRLGF+VH EL++AGRDP+VHEALC KV
Sbjct:  138 LLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRRKSDPGARKRMSKVALIASNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPKVHEALCMKV 358          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: A0A835ZFM7_9STRA (PolyA_pol domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFM7_9STRA)

HSP 1 Score: 263 bits (671), Expect = 1.230e-81
Identity = 126/212 (59.43%), Postives = 165/212 (77.83%), Query Frame = 1
Query:   10 MVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            +V++E MGTTLRVAGGWVRDKL+G  +   + M+    KMD+DIALDNC+G  FA  ++R+L+    +++ V +++ NPEKSKHLETAT+ + GF +DFVNLRTESY  DSRIP++ IGTPE+DA+RRDLTIN+LFYN+NT  VED+TG+G +DL  G++ TPLP  +TLLDDPLRVLR++RFASR  F +  +LL A +DP VH AL  KV
Sbjct:   20 VVEEEAMGTTLRVAGGWVRDKLLGAARCGGEHMVGVDNKMDVDIALDNCLGKGFAETVNRHLAKKGMKSAAVGIVSKNPEKSKHLETATMHLLGFSIDFVNLRTESYTSDSRIPNMGIGTPEDDAYRRDLTINALFYNINTGLVEDFTGRGLTDLAAGVISTPLPAVDTLLDDPLRVLRSIRFASRFNFNMSQDLLMACKDPEVHVALAQKV 231          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: W7TAJ6_9STRA (Poly A polymerase, head domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAJ6_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.000e-79
Identity = 126/212 (59.43%), Postives = 159/212 (75.00%), Query Frame = 1
Query:   10 MVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            +V+DEN+GTTLRVAGGWVRDK++G      +        +DIDIALDN MG DFA  L+ +L+    +   V +I++NP KSKHLETAT+R+  F +DFVNLRTE+Y  +SRIPS+ IG+PEEDA RRDLTIN+LFYN++T  +ED+ G+G  D+R+G++RTPLP   TLLDDPLRVLRAVRFASRL F +  EL+ A  DPRVH AL  KV
Sbjct:  198 VVKDENLGTTLRVAGGWVRDKVLGHWSADGE--------VDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKV 401          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: A0A4D9CTQ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTQ7_9STRA)

HSP 1 Score: 253 bits (646), Expect = 8.770e-77
Identity = 126/212 (59.43%), Postives = 159/212 (75.00%), Query Frame = 1
Query:   10 MVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            +V+DEN+GTTLRVAGGWVRDK++G      +        +DIDIALDN MG DFA  L+ +L+    +   V +I++NP KSKHLETAT+R+  F +DFVNLRTE+Y  +SRIPS+ IG+PEEDA RRDLTIN+LFYN++T  +ED+ G+G  D+R+G++RTPLP   TLLDDPLRVLRAVRFASRL F +  EL+ A  DPRVH AL  KV
Sbjct:  173 VVKDENLGTTLRVAGGWVRDKVLGHWSADGE--------VDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKV 376          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: A0A8J4PJG3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PJG3_9MYCE)

HSP 1 Score: 242 bits (617), Expect = 2.770e-74
Identity = 120/215 (55.81%), Postives = 155/215 (72.09%), Query Frame = 1
Query:    1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            +  +V++ N  TTLRVAGGWVRDKL G +  SH          DIDI LDN MG  FA  ++ YL   Q +T ++ +I SNPE+SKHLETAT++I   W+DFVNLR+E+Y + SRIP I IGTP++DA RRDLTINSLFYN+N + VEDYTG G SDL+ G++RTPLPP  T LDDPLRV R++RFA+RL F +  EL+DA  +P +  A+ +K+
Sbjct:   97 LMDVVKETNCKTTLRVAGGWVRDKLRGDD--SH----------DIDITLDNMMGESFAELVNNYLGNHQQKTHRIGVIQSNPEQSKHLETATVKIFDMWIDFVNLRSETYTEASRIPEITIGTPKDDALRRDLTINSLFYNINENRVEDYTGNGISDLKMGIIRTPLPPLTTFLDDPLRVFRSIRFATRLYFAIDKELMDAASNPLISNAIKSKI 299          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: Q54BQ2_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54BQ2_DICDI)

HSP 1 Score: 243 bits (619), Expect = 4.260e-74
Identity = 118/215 (54.88%), Postives = 155/215 (72.09%), Query Frame = 1
Query:    1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            +  +++D   GTTLRVAGGWVRDKL G +              DIDI LDN MG  FA  ++++LS    +T ++ +I SNPE+SKHLETAT+++   W+DFVNLR+ESY   SRIP I+IGTP +DA RRDLTINSLF+N+N + +ED+TG+G +DLRDG++RTPLP   T LDDPLRV R++RFASRL FK+  EL  AG DP V +A+ +K+
Sbjct:   82 LMHVIRDSGCGTTLRVAGGWVRDKLRGDDSN------------DIDITLDNMMGEAFAELVNKHLSSKHHQTHRIGVIQSNPEQSKHLETATVKVFDMWIDFVNLRSESYTDTSRIPVISIGTPLQDALRRDLTINSLFFNINENRIEDFTGQGINDLRDGIIRTPLPSLTTFLDDPLRVFRSIRFASRLNFKIDEELFKAGSDPVVKDAIKSKI 284          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: UPI0006449D42 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449D42)

HSP 1 Score: 243 bits (621), Expect = 8.570e-74
Identity = 121/215 (56.28%), Postives = 156/215 (72.56%), Query Frame = 1
Query:    1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            + Q+V+    GTTLRVAGGWVRDKL G +              DIDIALDN MG  FA  +++YL      T ++ +I SNP +SKHLETAT+RI   W+DFVNLR+E+Y ++SRIP+I IGTP+EDAFRRDLTINSLFYN+N + +ED+TG G +DL  G+VRTPLPP  T LDDPLRVLR++RFA+RL + +  +L++A   P+V EAL +KV
Sbjct:  117 LLQVVEKSKCGTTLRVAGGWVRDKLRGDDSS------------DIDIALDNLMGEAFASLVNQYLQDHNQETHRIGVIQSNPSQSKHLETATVRIFDMWIDFVNLRSETYTEESRIPTIQIGTPQEDAFRRDLTINSLFYNINENKIEDFTGNGINDLMCGIVRTPLPPQTTFLDDPLRVLRSIRFATRLYYAIDHKLVEAASSPKVKEALKSKV 319          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: F0ZVA3_DICPU (PolyA_pol domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZVA3_DICPU)

HSP 1 Score: 241 bits (615), Expect = 1.600e-73
Identity = 119/215 (55.35%), Postives = 156/215 (72.56%), Query Frame = 1
Query:    1 IFQMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            +  +V++ N GTTLRVAGGWVRDKL G +              DIDI LDN MG  FA  ++++LSG Q +T ++ +I SNPE+SKHLETAT++I   W+DFVNLR+E+Y  +SRIP I IGTP ED+ RRDLTINSLFYN+N + +ED+TGK  +DL  G++RTPLPP  T LDDPLRV R++RFASRL FK+  EL++A  +  V EA+ +K+
Sbjct:   81 LMHVVRNSNCGTTLRVAGGWVRDKLRGDDSN------------DIDITLDNMMGESFAELVNKHLSGKQHQTHRIGVIQSNPEQSKHLETATVKIFDLWIDFVNLRSETYTDNSRIPEIKIGTPLEDSLRRDLTINSLFYNINENKIEDFTGKAITDLNLGIIRTPLPPLTTFLDDPLRVFRSIRFASRLYFKIDQELVEAASNAVVKEAIKSKI 283          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: A0A5J4Z172_PORPP (CCA tRNA nucleotidyltransferase, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z172_PORPP)

HSP 1 Score: 241 bits (614), Expect = 1.960e-73
Identity = 121/213 (56.81%), Postives = 149/213 (69.95%), Query Frame = 1
Query:    7 QMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            ++V+  N+  TLRVAGGWVRDKL G +          +E +DIDIALD  +G +FA   + YL   +    ++A+I  NP++SKHLETA + + G W+DFVNLRTE Y  DSRIP I IGTP EDA RRDLTIN+LFYN+N DTVED+TG G SDL   ++RTPL P  TLLDDPLR LRA+RF SRL F V  +L  A  DPRVH+AL +KV
Sbjct:   36 EVVEKNNLDVTLRVAGGWVRDKLFGSQ----------MEHVDIDIALDTMLGREFAELANEYLQKHEEERHRIAVIQRNPDQSKHLETARMLMFGLWIDFVNLRTEKYTHDSRIPEIEIGTPFEDAMRRDLTINALFYNINNDTVEDFTGLGISDLEKRIIRTPLHPLTTLLDDPLRALRAIRFTSRLNFSVDPDLYAAMSDPRVHQALLSKV 238          
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Match: J9I5U6_9SPIT (tRNA nucleotidyltransferase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I5U6_9SPIT)

HSP 1 Score: 238 bits (607), Expect = 9.470e-73
Identity = 120/213 (56.34%), Postives = 154/213 (72.30%), Query Frame = 1
Query:    7 QMVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCMGGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFVNLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGKGTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGRDPRVHEALCTKV 645
            Q++++ N+ TTLRVAGGWVRDKL+G+E             MDIDIALD+  G +FA  ++  L    ++  K  +I SN EKSKHLETATLRI G  +D VNLR+E Y ++SR+P+I+IGTPEEDA+RRDLTINSLFYN+N   VED+T +G  DL+DG++RTPL P +T LDDPLRV+R VRFA+R  FK+  E+ DA +DPRV  A   KV
Sbjct:    2 QIIKENNLKTTLRVAGGWVRDKLMGKES------------MDIDIALDDMFGEEFAKMINEKLHPDGAK--KFGVIKSNSEKSKHLETATLRIHGVMIDLVNLRSEKYTEESRVPTIDIGTPEEDAYRRDLTINSLFYNINEQKVEDFTQRGIQDLKDGIIRTPLEPLQTFLDDPLRVMRTVRFATRFDFKILDEIYDAAKDPRVQVAFSQKV 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71246.14786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2S4_ECTSI1.630e-12182.81PolyA_pol domain-containing protein n=2 Tax=Ectoca... [more]
A0A835ZFM7_9STRA1.230e-8159.43PolyA_pol domain-containing protein n=1 Tax=Tribon... [more]
W7TAJ6_9STRA1.000e-7959.43Poly A polymerase, head domain protein n=1 Tax=Nan... [more]
A0A4D9CTQ7_9STRA8.770e-7759.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8J4PJG3_9MYCE2.770e-7455.81Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
Q54BQ2_DICDI4.260e-7454.88Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
UPI0006449D428.570e-7456.28hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZVA3_DICPU1.600e-7355.35PolyA_pol domain-containing protein n=1 Tax=Dictyo... [more]
A0A5J4Z172_PORPP1.960e-7356.81CCA tRNA nucleotidyltransferase, mitochondrial n=1... [more]
J9I5U6_9SPIT9.470e-7356.34tRNA nucleotidyltransferase n=1 Tax=Oxytricha trif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71246contigH-elongata_contig71246:696..2830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.4
Seed ortholog evalue1.1e-99
Seed eggNOG ortholog2880.D7G2S4
KEGG rclassRC00078
KEGG koko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,map03013
EggNOG free text desc.CTP:tRNA cytidylyltransferase activity
EggNOG OGsCOG0617@1,KOG2159@2759
EC2.7.7.72
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPoly A polymerase, head domain
Ec32 orthologEc-11_003320.1
Exons3
Model size645
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71246.14786.1prot_H-elongata_contig71246.14786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71246 696..2821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.4384909-CDS-H-elongata_contig71246:695..9481622931112.4384909-CDS-H-elongata_contig71246:695..948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71246 696..948 -
1691679703.1721177-CDS-H-elongata_contig71246:695..9481691679703.1721177-CDS-H-elongata_contig71246:695..948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71246 696..948 -
1622931112.4659116-CDS-H-elongata_contig71246:1586..17771622931112.4659116-CDS-H-elongata_contig71246:1586..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71246 1587..1777 -
1691679703.1862462-CDS-H-elongata_contig71246:1586..17771691679703.1862462-CDS-H-elongata_contig71246:1586..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71246 1587..1777 -
1622931112.4851375-CDS-H-elongata_contig71246:2629..28211622931112.4851375-CDS-H-elongata_contig71246:2629..2821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71246 2630..2821 -
1691679703.200101-CDS-H-elongata_contig71246:2629..28211691679703.200101-CDS-H-elongata_contig71246:2629..2821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71246 2630..2821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.5071495-UTR-H-elongata_contig71246:2821..28301622931112.5071495-UTR-H-elongata_contig71246:2821..2830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71246 2822..2830 -
1691679703.2137413-UTR-H-elongata_contig71246:2821..28301691679703.2137413-UTR-H-elongata_contig71246:2821..2830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71246 2822..2830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71246.14786.1

>prot_H-elongata_contig71246.14786.1 ID=prot_H-elongata_contig71246.14786.1|Name=mRNA_H-elongata_contig71246.14786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MVQDENMGTTLRVAGGWVRDKLIGQEQGSHQRMLARVEKMDIDIALDNCM
GGDFAVKLSRYLSGGQSRTSKVALIASNPEKSKHLETATLRIDGFWVDFV
NLRTESYLQDSRIPSINIGTPEEDAFRRDLTINSLFYNVNTDTVEDYTGK
GTSDLRDGLVRTPLPPCETLLDDPLRVLRAVRFASRLGFKVHSELLDAGR
DPRVHEALCTKV
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mRNA from alignment at H-elongata_contig71246:696..2830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71246.14786.1 ID=mRNA_H-elongata_contig71246.14786.1|Name=mRNA_H-elongata_contig71246.14786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2135bp|location=Sequence derived from alignment at H-elongata_contig71246:696..2830- (Himanthalia elongata Himel1 dioecious)
ATATTCCAGATGGTGCAGGACGAGAACATGGGTACGACGCTTCGGGTCGC AGGAGGGTGGGTCCGGGATAAGCTGATTGGACAAGAGCAGGGGTCCCACC AGCGGATGCTCGCCAGGGTGGAAAAGATGGACATCGACATCGCGCTTGAC AACTGCATGGGGGGTGACTTCGCGGTCAAGCTCAGCCGCTATTTATCAGG GGTACGACGAGACTGTCTTTAAAAAAAAAGTCTCCGAGAACACTCCTTTG CTCCGAAGTTATTTTTTTCTCCTACGTTTTACTTTCCATTTTTTTTCTTC TTCAATGATTGCAAGTACCCTTAAAAAAGAACACAAAAACCCCAACACAT ATATTCTGTACAATATTTTTATTTAAAAGACTTTAGGCTCATTCTAACTC TCCGAACATCCATATTTGGACTAAAGTCTATACGTCGCTCTAAATATCTC GTAATATCCTTTTAACGCCGTATTGACCTGTTTTGATCAAAATAAGTACG TTTCAAAATGCACTTGTGCGATTTAGCAAGAAACGTTTTGTGTGTGTGTG TGTGTGTGTGTGTTTCCCCCCCGTCTCCGAGGTGTTCGACCATGCATTAT TCTTAAACCAAGCATTTGACGTTGAAACGATAACGTGCGGTGTGTTGCTG TAAAGTATAACGATAACAATAACGGCAAGCAACAGTACTTGTATAGTATT AATAGTAACAAGTCAGTCGATGCTAGTAGAGGCGGGCTGATGCACTCGTG TGTCTCGCGTCCCGTTTCCTTCTTTCCTTCCCTTCTGGTTTCCATCTAAA AACCTAAGCCCTTTATTTTCGAGTCAAATGTCGTCTCGGCTCGGCTTTGT ACGGCTTGATAGCCTTCTATCCTCTTTACCTGCATTACCCATACCTGCAT TACTTGGAGACGATAGTGGAGGCGGTAGTGAAGTAGGTGTACCGGCTATA AAGCATCCCAGTAGGTTGCCCGTATCCTACTCTATAGGTCATATATTTTA TAAGGATGGTGTTTGCTCGGGGGCTGGGCGGCGTCTGGGGTTGAACACTG AAGGGTCAATCAAGGACTAGCAAGGTGGCGCTTATTGCGTCCAACCCGGA GAAGTCCAAGCATCTCGAGACCGCGACCCTGAGGATTGACGGCTTTTGGG TCGACTTTGTGAACCTTCGGACGGAGTCCTACCTCCAGGACAGCCGCATC CCGAGCATCAACATTGGAACTCCCGAGGAAGATGCGTTCCGGAGGTGTGA GGAGTTGTCGCATACAGTGATGATGAACAAACCTTTATGAAGTCAGTTAC CACGAAATAAGTGGGAGTCGCCGCGTTGGCGTAAGAAACAAAGAGAGGAG GGTACTGTAGATTGTATGTATTTAGTATTTAGTACCACGGGCGAAATTGG CAACCTAGTTAGCACGTGGAATAATATATGACATCCCCTCCCCCCGCCCC CCCATTGGCAAGAGGTGATATCAATATCAACTCCTTCGCCGTTTCACGCC TTTCCCCCCCCCGGCTTCTTAATACTAGTACAAGCAACGTTCAATCGGTA ATAGTCGACGAGCTCTAGGAGTGCTCTTAAAAGCGTAGACATCAATTACC TCGTGATGTATGGGTTGATCAAACTTAGGACCACATATGGGATGGGATGG GATGGGATAGGCAATGTTGCGGTAGGTGGGATTGTGGTAATCTAGCTAGC ACGTCGAAGGGCAATGTCCCATCGCCAGCCACAAAGTGATGCTGTAATAA ATGTATATATATATAATATGTATATATATATATATATATACCTGGTATTA CCATAGGTATTAGTCTATAGATTTTATACTGTGTACCCTTCCCTCCCTTC CCTCCCTCCCCTGGTCGTATTTCTGCCAAAAGGGATCTGACAATCAACTC GCTCTTCTACAACGTGAACACTGACACCGTCGAGGACTACACGGGTAAGG GCACTTCAGACCTGAGGGATGGACTCGTGAGGACACCCCTGCCCCCGTGC GAGACGCTCCTAGACGACCCCCTCCGAGTCTTGAGAGCGGTCAGGTTCGC CAGCCGACTAGGTTTCAAGGTGCACTCGGAACTGCTGGACGCCGGCAGAG ACCCCAGGGTCCACGAGGCCCTTTGCACGAAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig71246:696..2830-

>mRNA_H-elongata_contig71246.14786.1 ID=mRNA_H-elongata_contig71246.14786.1|Name=mRNA_H-elongata_contig71246.14786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig71246:696..2830- (Himanthalia elongata Himel1 dioecious)
ATGGTGCAGGACGAGAACATGGGTACGACGCTTCGGGTCGCAGGAGGGTG
GGTCCGGGATAAGCTGATTGGACAAGAGCAGGGGTCCCACCAGCGGATGC
TCGCCAGGGTGGAAAAGATGGACATCGACATCGCGCTTGACAACTGCATG
GGGGGTGACTTCGCGGTCAAGCTCAGCCGCTATTTATCAGGGATGGTGCA
GGACGAGAACATGGGTACGACGCTTCGGGTCGCAGGAGGGTGGGTCCGGG
ATAAGCTGATTGGACAAGAGCAGGGGTCCCACCAGCGGATGCTCGCCAGG
GTGGAAAAGATGGACATCGACATCGCGCTTGACAACTGCATGGGGGGTGA
CTTCGCGGTCAAGCTCAGCCGCTATTTATCAGGGGGTCAATCAAGGACTA
GCAAGGTGGCGCTTATTGCGTCCAACCCGGAGAAGTCCAAGCATCTCGAG
ACCGCGACCCTGAGGATTGACGGCTTTTGGGTCGACTTTGTGAACCTTCG
GACGGAGTCCTACCTCCAGGACAGCCGCATCCCGAGCATCAACATTGGAA
CTCCCGAGGAAGATGCGTTCCGGAGGGTCAATCAAGGACTAGCAAGGTGG
CGCTTATTGCGTCCAACCCGGAGAAGTCCAAGCATCTCGAGACCGCGACC
CTGAGGATTGACGGCTTTTGGGTCGACTTTGTGAACCTTCGGACGGAGTC
CTACCTCCAGGACAGCCGCATCCCGAGCATCAACATTGGAACTCCCGAGG
AAGATGCGTTCCGGAGGGATCTGACAATCAACTCGCTCTTCTACAACGTG
AACACTGACACCGTCGAGGACTACACGGGTAAGGGCACTTCAGACCTGAG
GGATGGACTCGTGAGGACACCCCTGCCCCCGTGCGAGACGCTCCTAGACG
ACCCCCTCCGAGTCTTGAGAGCGGTCAGGTTCGCCAGCCGACTAGGTTTC
AAGGTGCACTCGGAACTGCTGGACGCCGGCAGAGACCCCAGGGTCCACGA
GGCCCTTTGCACGAAGGTTGGATCTGACAATCAACTCGCTCTTCTACAAC
GTGAACACTGACACCGTCGAGGACTACACGGGTAAGGGCACTTCAGACCT
GAGGGATGGACTCGTGAGGACACCCCTGCCCCCGTGCGAGACGCTCCTAG
ACGACCCCCTCCGAGTCTTGAGAGCGGTCAGGTTCGCCAGCCGACTAGGT
TTCAAGGTGCACTCGGAACTGCTGGACGCCGGCAGAGACCCCAGGGTCCA
CGAGGCCCTTTGCACGAAGGTT
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