prot_H-elongata_contig11909.1477.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11909.1477.1
Unique Nameprot_H-elongata_contig11909.1477.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length298
Homology
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A6H5JPC1_9PHAE (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC1_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 1.290e-119
Identity = 189/294 (64.29%), Postives = 224/294 (76.19%), Query Frame = 0
Query:    6 STPWLGGSGALGATSSSVF-KEPEEKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFTYMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKLRVTDTYAETMGAPTEAEEDAQAVTIRRQFPGQGAAGIKHPLPVKGVRG 298
            STPWLGGSGA+GAT +    KEPE+K + E  ADVV +LKRR Q GKGPATITEISD TDVDL+KGRD+ VLE+L+ANPK+  L   DPLQETAFTYM KYAV+N+ ELLQLI+RCKGGICWEELKDTY++V  DM AM++   +I + NKETHKMNLYPRGDVFLTELPG +RI+P S VA T E MNQHIRRGEA+R+SGQWFRVSSE             TVGNQT R+AAP +VTMNADL +R TD +AE MGAP E E  A    +++Q+  +G    ++PLP+ GV G
Sbjct:   30 STPWLGGSGAVGATGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDQDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVAMTTEDMNQHIRRGEAVRISGQWFRVSSE-------------TVGNQTLRSAAPLTVTMNADLSVRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYG 310          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: D7FZN3_ECTSI (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN3_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 3.560e-108
Identity = 169/247 (68.42%), Postives = 195/247 (78.95%), Query Frame = 0
Query:    6 STPWLGGSGALGATSSSVF-KEPEEKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFTYMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKLR 251
            STPWLGGSGA+GA  +    KEPE+K + E  ADVV +LKRR Q GKGPATITEISD TDVDL+KGRD+ VLE+L+ANPK+  L   DPLQETAFTYM KYAV+N+ ELLQLI+RCKGGICWEELKDTY++V  DM AM++   +I + NKETHKMNLYPRGDVFLTELPG +RI+P S VA T E MNQHIRRGEA+R+SGQWFRVSSE             TVGNQT R+AAP +VTMNADL +R
Sbjct:   30 STPWLGGSGAVGAAGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLVANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSE-------------TVGNQTLRSAAPLTVTMNADLSVR 263          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: B8C9R6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9R6_THAPS)

HSP 1 Score: 104 bits (259), Expect = 2.170e-21
Identity = 83/273 (30.40%), Postives = 125/273 (45.79%), Query Frame = 0
Query:   19 TSSSVFKEPEEKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKG-RDDEVLEILIANPKMAQLSPHDPLQETA----FTYMVKYA-VSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRI---------------EPV-------------------SSVANTQEYMNQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKLR 251
            +S+ +      K ++E+ ADV+++L+    SG  P T+  I     +DL +G RDD V ++L++NPK+      DP   T     F Y  K++ V ++  LL  I+RCK G+ W +L D Y  V  D+ ++ +   ++ + N E     L+PRG+ FL EL G V +               +PV                   S +  T       IRRGEA+R+ G+WFRVSS          R    +  Q  R  APPSV    DL  +
Sbjct:   40 SSTLIVPNVSHKSDLEKQADVLLFLRHHRSSGCLPPTV--IYKSLGIDLTEGGRDDSVAKMLLSNPKVNVEEVPDPENPTLSILLFGYRAKFSTVRDKSTLLAQINRCKNGVKWSDLLDAYDGVEGDLQSLLRGGEVLGVLNSEEKDKILFPRGEQFLVELDGVVSVSLPVLPDERAIALITDPVQRQLKRNEVARLKHQRRLASQIVQTDVDPRTQIRRGEAVRIGGEWFRVSSSI--------RDDLPLDKQPPRAQAPPSVVSMKDLSKK 302          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: W4GDG0_9STRA (TFIIE beta domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDG0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.570e-16
Identity = 57/181 (31.49%), Postives = 91/181 (50.28%), Query Frame = 0
Query:   33 VERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFTYMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSS 213
            V R   V+ YL   + +     T+ +I  +T +DL    + EV E +  NPK+        ++   F Y  K+ +  + ++L+ ++R   GI + +LKD Y  V  D+  + +   +I I N E      YPRG  FL EL G   +E    +  T+E +   IRRG+AI++  QWFRVS+
Sbjct:   37 VGRLQKVLEYL--NSIANHAAVTVPQIYQKTGIDLASPGEYEVCERVRNNPKVR-------IEGDKFAYKAKFDIKTRADVLRQLNRSPEGIPFRDLKDCYKNVEDDLRDLTRIGTVICIRNTEDGNDVYYPRGGQFLVELSGSGLVEHGCFIVATKEDITSEIRRGDAIKVGDQWFRVSA 208          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: K0SH68_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SH68_THAOC)

HSP 1 Score: 87.8 bits (216), Expect = 9.880e-16
Identity = 82/277 (29.60%), Postives = 122/277 (44.04%), Query Frame = 0
Query:   29 EKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGR-DDEVLEILIANPKMAQLSPHDP----LQETAFTYMVKYA-VSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRI---------EPVSSVANTQ---------EYMNQH----------------IRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADL-KLRVTDTYAETMGAPT 264
            +K ++E+ ADV+++L+    +G  P  +  I     +DL  G  D  V+++L  NPK+      DP    L    F+Y  K++ V ++  LL  I+R K G+ W +L D Y  V  D+ ++     ++ +   E  ++ ++PRG+ FL EL G V++         EP       Q         EY N                  IRRGEAI++ G+WFRVSS          R    +  Q  R  APPSV    DL K    D Y     A T
Sbjct:   52 QKSDLEKQADVLVFLRNHRSAGFLPPAV--IYKNLGIDLSDGGVDSAVVKMLECNPKVNVEEVPDPENPSLAMNTFSYRAKFSTVRDKPTLLAQINRMKNGVRWADLSDAYDGVEVDLQSLMTAGEVLAV-GPEPKELVVFPRGESFLVELDGCVKLKEEVPPLPEEPTDKTDQQQMAVYKNRLAEYKNARKLQSCLIQTDIDPRLQIRRGEAIKIGGEWFRVSSAV--------RDDLPLDKQPPRAQAPPSVVSMKDLSKKNDADGYVRRFDAKT 317          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A7S3PVG4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVG4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.910e-14
Identity = 76/262 (29.01%), Postives = 114/262 (43.51%), Query Frame = 0
Query:   29 EKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGRDDE-VLEILIANPKMAQLSPHDP----LQETAFTYMVKYA-VSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIE---------PVSSVANTQEYM------------------------NQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKLR 251
            +K ++E+  DV+ +L+    SG  P +I  I     VDL +G  DE V ++L+ N ++      DP    L    F Y  K+  V N+  LL  ++ CK GI   +L D+Y  +  D+  +     II + N E     L+PRG+ FL EL G +++          P  S  N+ E                           + IRRGEA+ + GQWFRVSS             G++  Q  R  AP SV+   +L  +
Sbjct:   49 DKTDLEKQYDVIQFLQAHRSSGCLPPSI--IYKSIRVDLSEGGHDESVTKLLLKNARIRIEEIPDPENPSLTIYTFGYQAKFNNVRNRTGLLAQVNSCKNGIRQRDLLDSYEGIQEDIDQLITGGEIIAVLNSEDKDKILFPRGEPFLAELDGHIKVHDGLLEPIIAPTGSNGNSNEMTLDSMRKAQLEKQQYSFIAESDVDPRKQIRRGEAVCIGGQWFRVSS---------AIREGSLSEQPARAHAPLSVSSRKELSKK 299          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A7S3L736_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L736_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.140e-14
Identity = 79/264 (29.92%), Postives = 122/264 (46.21%), Query Frame = 0
Query:   14 GALGATSSSVFKEPEEKKNVERHADVVMYL-KRRTQSGKGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDP----LQETAFTYMVKYA-VSNQHELLQLIDRCKGGICWEELKDTY--ATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKV-----------------RIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGT-VGNQTQRTAAPPSVTMNADLKLR 251
            G+ G ++  +F + + K ++E+  D++ +L K R   G  P+ I +    T +DL+   D +V  +L  NPK+      DP    L+   ++Y   Y  V ++  LL  I+R   G+    L D Y  A VA+D+ A+     +I ++N E     L+PRG+ FL EL G +                 ++ P +    T       IRRGEA+++ GQWFRVSS  +         AG  +  Q  R  AP SV    DL  R
Sbjct:   35 GSPGLSTEELFLQAQNKPDLEKQFDILNFLQKHREAGGLAPSVIYK---STGIDLEL--DTKVAAMLKNNPKIHVDQWPDPENPALKVPHYSYQATYPNVRDRATLLAQINREFNGVPMRHLLDAYQEAEVAADISALVTAGDVIAVQNSEDKDKILFPRGEPFLVELDGLIAIPRPNETKSEDTDNREKVPPETVYVETDVDPCPQIRRGEAVQVGGQWFRVSSAVK---------AGLPLSEQPSRAQAPLSVVSLQDLSKR 284          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A2P4XVP3_9STRA (TFA2_Winged_2 domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XVP3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-12
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 0
Query:  104 KYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSS 213
            KY + N+ +LL+++DR   G+  E+L D Y  V  D+  + +T  II ++N +      Y RG  FL +L G   +E  S +A++ + +   IRRG+A+R+   WFRVS+
Sbjct:    2 KYDIKNKVQLLKILDRIPEGMPIEDLIDCYVGVEDDLKELTRTGEIICLKNADKGAEVYYSRGPTFLVDLSGVATVEAGSYLAHSSQDLTGEIRRGDALRVGDNWFRVSA 111          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A397DCB7_9STRA (Protein kinase domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DCB7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.710e-9
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  123 GICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSS 213
            GI + +LKD Y  V  D+  + +   +I I N E      YPRG  FL EL G   +E    +  T+E +   IRRG+A+++  QWFRVS+
Sbjct:  163 GIPFRDLKDCYKNVEDDLRDLTRIGTVICIRNTEDGNDVYYPRGGQFLVELSGSGLVEHGCFIVATKEDITSEIRRGDAVKVGDQWFRVSA 253          
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A3R8D4T4_9STRA (TFIIE beta domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R8D4T4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.680e-8
Identity = 43/149 (28.86%), Postives = 69/149 (46.31%), Query Frame = 0
Query:   65 VDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFTYMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSS 213
            +DL    + EV E +  NPK+        ++   F Y  K+ +  + ++L+ ++R                V  D+  + +   +I I N E      YPRG  FL EL G   +E    +  T+E +   IRRG+AI++  QWFRVS+
Sbjct:   88 IDLASPGEYEVCERVRNNPKVR-------IEGDKFAYKAKFDIKTRADVLRQLNR---------------NVEDDLRDLTRIGTVICIRNTEDGNDVYYPRGGQFLVELSGSGLVEHGCFIVATKEDITSEIRRGDAIKVGDQWFRVSA 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JPC1_9PHAE1.290e-11964.29TFIIE beta domain-containing protein n=1 Tax=Ectoc... [more]
D7FZN3_ECTSI3.560e-10868.42TFIIE beta domain-containing protein n=1 Tax=Ectoc... [more]
B8C9R6_THAPS2.170e-2130.40Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
W4GDG0_9STRA5.570e-1631.49TFIIE beta domain-containing protein n=8 Tax=Aphan... [more]
K0SH68_THAOC9.880e-1629.60Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A7S3PVG4_9STRA1.910e-1429.01Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3L736_9STRA8.140e-1429.92Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A2P4XVP3_9STRA1.300e-1235.45TFA2_Winged_2 domain-containing protein (Fragment)... [more]
A0A397DCB7_9STRA5.710e-938.46Protein kinase domain-containing protein n=3 Tax=A... [more]
A0A3R8D4T4_9STRA8.680e-828.86TFIIE beta domain-containing protein n=4 Tax=Aphan... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040501TFA2, Winged helix domain 2PFAMPF18121TFA2_Winged_2coord: 109..158
e-value: 1.5E-6
score: 27.8
IPR016656Transcription initiation factor TFIIE, beta subunitPANTHERPTHR12716TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNITcoord: 28..172
IPR003166Transcription factor TFIIE beta subunit, DNA-binding domainPROSITEPS51351TFIIE_BETA_Ccoord: 19..108
score: 9.132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11909contigH-elongata_contig11909:2278..6263 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11909.1477.1mRNA_H-elongata_contig11909.1477.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11909 2278..6263 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11909.1477.1 ID=prot_H-elongata_contig11909.1477.1|Name=mRNA_H-elongata_contig11909.1477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
GTLSSSTPWLGGSGALGATSSSVFKEPEEKKNVERHADVVMYLKRRTQSG
KGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFT
YMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPII
VIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGE
AIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKL
RVTDTYAETMGAPTEAEEDAQAVTIRRQFPGQGAAGIKHPLPVKGVRG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040501TFA2_Winged_2
IPR016656TFIIE-bsu
IPR003166TFIIE_bsu_DNA-bd