mRNA_H-elongata_contig11909.1477.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11909.1477.1
Unique NamemRNA_H-elongata_contig11909.1477.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A6H5JPC1_9PHAE (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC1_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 1.290e-119
Identity = 189/294 (64.29%), Postives = 224/294 (76.19%), Query Frame = 1 
Query:   16 STPWLGGSGALGATSSSVF-KEPEEKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFTYMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKLRVTDTYAETMGAPTEAEEDAQAVTIRRQFPGQGAAGIKHPLPVKGVRG 894
            STPWLGGSGA+GAT +    KEPE+K + E  ADVV +LKRR Q GKGPATITEISD TDVDL+KGRD+ VLE+L+ANPK+  L   DPLQETAFTYM KYAV+N+ ELLQLI+RCKGGICWEELKDTY++V  DM AM++   +I + NKETHKMNLYPRGDVFLTELPG +RI+P S VA T E MNQHIRRGEA+R+SGQWFRVSSE             TVGNQT R+AAP +VTMNADL +R TD +AE MGAP E E  A    +++Q+  +G    ++PLP+ GV G
Sbjct:   30 STPWLGGSGAVGATGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDQDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVAMTTEDMNQHIRRGEAVRISGQWFRVSSE-------------TVGNQTLRSAAPLTVTMNADLSVRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYG 310
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: D7FZN3_ECTSI (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN3_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 3.560e-108
Identity = 169/247 (68.42%), Postives = 195/247 (78.95%), Query Frame = 1 
Query:   16 STPWLGGSGALGATSSSVF-KEPEEKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFTYMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKLR 753
            STPWLGGSGA+GA  +    KEPE+K + E  ADVV +LKRR Q GKGPATITEISD TDVDL+KGRD+ VLE+L+ANPK+  L   DPLQETAFTYM KYAV+N+ ELLQLI+RCKGGICWEELKDTY++V  DM AM++   +I + NKETHKMNLYPRGDVFLTELPG +RI+P S VA T E MNQHIRRGEA+R+SGQWFRVSSE             TVGNQT R+AAP +VTMNADL +R
Sbjct:   30 STPWLGGSGAVGAAGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLVANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSE-------------TVGNQTLRSAAPLTVTMNADLSVR 263
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: B8C9R6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9R6_THAPS)

HSP 1 Score: 104 bits (259), Expect = 2.170e-21
Identity = 83/273 (30.40%), Postives = 125/273 (45.79%), Query Frame = 1 
Query:   55 TSSSVFKEPEEKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKG-RDDEVLEILIANPKMAQLSPHDPLQETA----FTYMVKYA-VSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRI---------------EPV-------------------SSVANTQEYMNQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKLR 753
            +S+ +      K ++E+ ADV+++L+    SG  P T+  I     +DL +G RDD V ++L++NPK+      DP   T     F Y  K++ V ++  LL  I+RCK G+ W +L D Y  V  D+ ++ +   ++ + N E     L+PRG+ FL EL G V +               +PV                   S +  T       IRRGEA+R+ G+WFRVSS          R    +  Q  R  APPSV    DL  +
Sbjct:   40 SSTLIVPNVSHKSDLEKQADVLLFLRHHRSSGCLPPTV--IYKSLGIDLTEGGRDDSVAKMLLSNPKVNVEEVPDPENPTLSILLFGYRAKFSTVRDKSTLLAQINRCKNGVKWSDLLDAYDGVEGDLQSLLRGGEVLGVLNSEEKDKILFPRGEQFLVELDGVVSVSLPVLPDERAIALITDPVQRQLKRNEVARLKHQRRLASQIVQTDVDPRTQIRRGEAVRIGGEWFRVSSSI--------RDDLPLDKQPPRAQAPPSVVSMKDLSKK 302
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: W4GDG0_9STRA (TFIIE beta domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDG0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.570e-16
Identity = 57/181 (31.49%), Postives = 91/181 (50.28%), Query Frame = 1 
Query:   97 VERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFTYMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSS 639
            V R   V+ YL   + +     T+ +I  +T +DL    + EV E +  NPK+        ++   F Y  K+ +  + ++L+ ++R   GI + +LKD Y  V  D+  + +   +I I N E      YPRG  FL EL G   +E    +  T+E +   IRRG+AI++  QWFRVS+
Sbjct:   37 VGRLQKVLEYL--NSIANHAAVTVPQIYQKTGIDLASPGEYEVCERVRNNPKVR-------IEGDKFAYKAKFDIKTRADVLRQLNRSPEGIPFRDLKDCYKNVEDDLRDLTRIGTVICIRNTEDGNDVYYPRGGQFLVELSGSGLVEHGCFIVATKEDITSEIRRGDAIKVGDQWFRVSA 208
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: K0SH68_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SH68_THAOC)

HSP 1 Score: 87.8 bits (216), Expect = 9.880e-16
Identity = 82/277 (29.60%), Postives = 122/277 (44.04%), Query Frame = 1 
Query:   85 EKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGR-DDEVLEILIANPKMAQLSPHDP----LQETAFTYMVKYA-VSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRI---------EPVSSVANTQ---------EYMNQH----------------IRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADL-KLRVTDTYAETMGAPT 792
            +K ++E+ ADV+++L+    +G  P  +  I     +DL  G  D  V+++L  NPK+      DP    L    F+Y  K++ V ++  LL  I+R K G+ W +L D Y  V  D+ ++     ++ +   E  ++ ++PRG+ FL EL G V++         EP       Q         EY N                  IRRGEAI++ G+WFRVSS          R    +  Q  R  APPSV    DL K    D Y     A T
Sbjct:   52 QKSDLEKQADVLVFLRNHRSAGFLPPAV--IYKNLGIDLSDGGVDSAVVKMLECNPKVNVEEVPDPENPSLAMNTFSYRAKFSTVRDKPTLLAQINRMKNGVRWADLSDAYDGVEVDLQSLMTAGEVLAV-GPEPKELVVFPRGESFLVELDGCVKLKEEVPPLPEEPTDKTDQQQMAVYKNRLAEYKNARKLQSCLIQTDIDPRLQIRRGEAIKIGGEWFRVSSAV--------RDDLPLDKQPPRAQAPPSVVSMKDLSKKNDADGYVRRFDAKT 317
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A7S3PVG4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVG4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.910e-14
Identity = 76/262 (29.01%), Postives = 114/262 (43.51%), Query Frame = 1 
Query:   85 EKKNVERHADVVMYLKRRTQSGKGPATITEISDETDVDLKKGRDDE-VLEILIANPKMAQLSPHDP----LQETAFTYMVKYA-VSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIE---------PVSSVANTQEYM------------------------NQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKLR 753
            +K ++E+  DV+ +L+    SG  P +I  I     VDL +G  DE V ++L+ N ++      DP    L    F Y  K+  V N+  LL  ++ CK GI   +L D+Y  +  D+  +     II + N E     L+PRG+ FL EL G +++          P  S  N+ E                           + IRRGEA+ + GQWFRVSS             G++  Q  R  AP SV+   +L  +
Sbjct:   49 DKTDLEKQYDVIQFLQAHRSSGCLPPSI--IYKSIRVDLSEGGHDESVTKLLLKNARIRIEEIPDPENPSLTIYTFGYQAKFNNVRNRTGLLAQVNSCKNGIRQRDLLDSYEGIQEDIDQLITGGEIIAVLNSEDKDKILFPRGEPFLAELDGHIKVHDGLLEPIIAPTGSNGNSNEMTLDSMRKAQLEKQQYSFIAESDVDPRKQIRRGEAVCIGGQWFRVSS---------AIREGSLSEQPARAHAPLSVSSRKELSKK 299
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A7S3L736_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L736_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.140e-14
Identity = 79/264 (29.92%), Postives = 122/264 (46.21%), Query Frame = 1 
Query:   40 GALGATSSSVFKEPEEKKNVERHADVVMYL-KRRTQSGKGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDP----LQETAFTYMVKYA-VSNQHELLQLIDRCKGGICWEELKDTY--ATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKV-----------------RIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSSEEEPRREREGRLAGT-VGNQTQRTAAPPSVTMNADLKLR 753
            G+ G ++  +F + + K ++E+  D++ +L K R   G  P+ I +    T +DL+   D +V  +L  NPK+      DP    L+   ++Y   Y  V ++  LL  I+R   G+    L D Y  A VA+D+ A+     +I ++N E     L+PRG+ FL EL G +                 ++ P +    T       IRRGEA+++ GQWFRVSS  +         AG  +  Q  R  AP SV    DL  R
Sbjct:   35 GSPGLSTEELFLQAQNKPDLEKQFDILNFLQKHREAGGLAPSVIYK---STGIDLEL--DTKVAAMLKNNPKIHVDQWPDPENPALKVPHYSYQATYPNVRDRATLLAQINREFNGVPMRHLLDAYQEAEVAADISALVTAGDVIAVQNSEDKDKILFPRGEPFLVELDGLIAIPRPNETKSEDTDNREKVPPETVYVETDVDPCPQIRRGEAVQVGGQWFRVSSAVK---------AGLPLSEQPSRAQAPLSVVSLQDLSKR 284
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A2P4XVP3_9STRA (TFA2_Winged_2 domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XVP3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-12
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:  310 KYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSS 639
            KY + N+ +LL+++DR   G+  E+L D Y  V  D+  + +T  II ++N +      Y RG  FL +L G   +E  S +A++ + +   IRRG+A+R+   WFRVS+
Sbjct:    2 KYDIKNKVQLLKILDRIPEGMPIEDLIDCYVGVEDDLKELTRTGEIICLKNADKGAEVYYSRGPTFLVDLSGVATVEAGSYLAHSSQDLTGEIRRGDALRVGDNWFRVSA 111
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A397DCB7_9STRA (Protein kinase domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DCB7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.710e-9
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:  367 GICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSS 639
            GI + +LKD Y  V  D+  + +   +I I N E      YPRG  FL EL G   +E    +  T+E +   IRRG+A+++  QWFRVS+
Sbjct:  163 GIPFRDLKDCYKNVEDDLRDLTRIGTVICIRNTEDGNDVYYPRGGQFLVELSGSGLVEHGCFIVATKEDITSEIRRGDAVKVGDQWFRVSA 253
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BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Match: A0A3R8D4T4_9STRA (TFIIE beta domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R8D4T4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.680e-8
Identity = 43/149 (28.86%), Postives = 69/149 (46.31%), Query Frame = 1 
Query:  193 VDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFTYMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPIIVIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGEAIRLSGQWFRVSS 639
            +DL    + EV E +  NPK+        ++   F Y  K+ +  + ++L+ ++R                V  D+  + +   +I I N E      YPRG  FL EL G   +E    +  T+E +   IRRG+AI++  QWFRVS+
Sbjct:   88 IDLASPGEYEVCERVRNNPKVR-------IEGDKFAYKAKFDIKTRADVLRQLNR---------------NVEDDLRDLTRIGTVICIRNTEDGNDVYYPRGGQFLVELSGSGLVEHGCFIVATKEDITSEIRRGDAIKVGDQWFRVSA 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11909.1477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JPC1_9PHAE1.290e-11964.29TFIIE beta domain-containing protein n=1 Tax=Ectoc... [more]
D7FZN3_ECTSI3.560e-10868.42TFIIE beta domain-containing protein n=1 Tax=Ectoc... [more]
B8C9R6_THAPS2.170e-2130.40Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
W4GDG0_9STRA5.570e-1631.49TFIIE beta domain-containing protein n=8 Tax=Aphan... [more]
K0SH68_THAOC9.880e-1629.60Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A7S3PVG4_9STRA1.910e-1429.01Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3L736_9STRA8.140e-1429.92Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A2P4XVP3_9STRA1.300e-1235.45TFA2_Winged_2 domain-containing protein (Fragment)... [more]
A0A397DCB7_9STRA5.710e-938.46Protein kinase domain-containing protein n=3 Tax=A... [more]
A0A3R8D4T4_9STRA8.680e-828.86TFIIE beta domain-containing protein n=4 Tax=Aphan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11909contigH-elongata_contig11909:2278..6263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.0
Seed ortholog evalue9e-87
Seed eggNOG ortholog2880.D7FZN3
EggNOG OGs2E0DN@1,2S7UB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons9
Model size894
Cds size894
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.8293154-CDS-H-elongata_contig11909:2277..24191622929696.8293154-CDS-H-elongata_contig11909:2277..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 2278..2419 -
1691679122.7234082-CDS-H-elongata_contig11909:2277..24191691679122.7234082-CDS-H-elongata_contig11909:2277..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 2278..2419 -
1622929696.8430457-CDS-H-elongata_contig11909:2638..27091622929696.8430457-CDS-H-elongata_contig11909:2638..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 2639..2709 -
1691679122.7352648-CDS-H-elongata_contig11909:2638..27091691679122.7352648-CDS-H-elongata_contig11909:2638..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 2639..2709 -
1622929696.8630617-CDS-H-elongata_contig11909:2932..31371622929696.8630617-CDS-H-elongata_contig11909:2932..3137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 2933..3137 -
1691679122.7456331-CDS-H-elongata_contig11909:2932..31371691679122.7456331-CDS-H-elongata_contig11909:2932..3137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 2933..3137 -
1622929696.8776846-CDS-H-elongata_contig11909:3344..34721622929696.8776846-CDS-H-elongata_contig11909:3344..3472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 3345..3472 -
1691679122.7536855-CDS-H-elongata_contig11909:3344..34721691679122.7536855-CDS-H-elongata_contig11909:3344..3472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 3345..3472 -
1622929696.8903944-CDS-H-elongata_contig11909:3932..40091622929696.8903944-CDS-H-elongata_contig11909:3932..4009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 3933..4009 -
1691679122.7619674-CDS-H-elongata_contig11909:3932..40091691679122.7619674-CDS-H-elongata_contig11909:3932..4009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 3933..4009 -
1622929696.9012053-CDS-H-elongata_contig11909:4094..41131622929696.9012053-CDS-H-elongata_contig11909:4094..4113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 4095..4113 -
1691679122.7701476-CDS-H-elongata_contig11909:4094..41131691679122.7701476-CDS-H-elongata_contig11909:4094..4113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 4095..4113 -
1622929696.9131467-CDS-H-elongata_contig11909:5259..53521622929696.9131467-CDS-H-elongata_contig11909:5259..5352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 5260..5352 -
1691679122.7781076-CDS-H-elongata_contig11909:5259..53521691679122.7781076-CDS-H-elongata_contig11909:5259..5352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 5260..5352 -
1622929696.9298444-CDS-H-elongata_contig11909:5722..58001622929696.9298444-CDS-H-elongata_contig11909:5722..5800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 5723..5800 -
1691679122.7863562-CDS-H-elongata_contig11909:5722..58001691679122.7863562-CDS-H-elongata_contig11909:5722..5800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 5723..5800 -
1622929696.946587-CDS-H-elongata_contig11909:6182..62631622929696.946587-CDS-H-elongata_contig11909:6182..6263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 6183..6263 -
1691679122.805151-CDS-H-elongata_contig11909:6182..62631691679122.805151-CDS-H-elongata_contig11909:6182..6263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11909 6183..6263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11909.1477.1prot_H-elongata_contig11909.1477.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11909 2278..6263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11909.1477.1

>prot_H-elongata_contig11909.1477.1 ID=prot_H-elongata_contig11909.1477.1|Name=mRNA_H-elongata_contig11909.1477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
GTLSSSTPWLGGSGALGATSSSVFKEPEEKKNVERHADVVMYLKRRTQSG
KGPATITEISDETDVDLKKGRDDEVLEILIANPKMAQLSPHDPLQETAFT
YMVKYAVSNQHELLQLIDRCKGGICWEELKDTYATVASDMMAMRQTRPII
VIENKETHKMNLYPRGDVFLTELPGKVRIEPVSSVANTQEYMNQHIRRGE
AIRLSGQWFRVSSEEEPRREREGRLAGTVGNQTQRTAAPPSVTMNADLKL
RVTDTYAETMGAPTEAEEDAQAVTIRRQFPGQGAAGIKHPLPVKGVRG
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mRNA from alignment at H-elongata_contig11909:2278..6263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11909.1477.1 ID=mRNA_H-elongata_contig11909.1477.1|Name=mRNA_H-elongata_contig11909.1477.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3986bp|location=Sequence derived from alignment at H-elongata_contig11909:2278..6263- (Himanthalia elongata Himel1 dioecious)
GGAACACTCTCTTCTTCAACGCCATGGCTAGGGGGAAGCGGTGCGCTTGG
GGCGACGTCGTCTTCCGTTTTCAAAGAGCCGGTAGGTCCTGCGGCACTTG
ACTGCAATACATCGCTTGCTTTTTTTCTCAAAACTGATACCACTGTCAAG
CTAGGGTCATTTTGTCTTTCTCGTGTGTTAGCTCGCGGACACCCGCTAGC
GATATCTCGAGACGATGTGGACGTTGCCCATAGAATGTATCCGGGCACAG
TTGAGGGTACTTGCAACGCTAAAGACAACGCGCTCAACCTTATCAGATCC
CTCCAAGGTCAAGGAGTTTGGTAAATCATCCCATTCTTGCGTATCTTGTG
CATCTGATCGCTGAAAAGTCCGTCAGATTCCAAGTGCATCACGAATATTT
TTCTTATCAACGGCGACCCCCTTTCGACGACGATGGCGACTCCCCTCTTA
TCCCCCCTACCAGGAGGAAAAAAAAAATGTCGAGCGACACGCCGACGTCG
TGATGTATCTGAAGAGACGAACACAGTCAGGGAAAGGCCCTGTGAGTGGC
AGAAACTGGAAAGGTCGAAGGTATTTCGCTCGATGCTCCGTACCAGGTTT
GCCGCACTAGCGTCGAGCAGCTGAACATCTCACGATTCAGCTCGATGTAA
TATCCCCTACAAAGTTTGGTTTATTCCCGAGTCCTCACCTGTGTGTAACT
TGCTCGAGATGAGTTGCGGGCGTTCGTGGAGTGGCTACGCTTCCCCGTCT
GATTCATCTATGGTTTTAGCTTTCATATGATTGCTCTTCGTCAATCCTCG
TCGCGCTATAGCGCGGAGGACTGAGTGGCGGAAGATTTGTGAGGCAGGCG
TTTATCTCCCAATTTGCGGCTCACCGCGATCATTTTCGTACTCGTGGCTT
ACTCTTAACAGGCCACAATCACGGAGATCTCAGACGAGACAGACGTGGAC
CTGAAAAAGGGTAGGGACGACGAGGTCCTCGAAATTCTCATCGCCAACCC
CAAGGTACGAATCACCACTTTCTTGTATCATCAGTGATTTTGACAGGAGA
TAAGGAATATTTCGCGACTTTGGAGGCCAGGGCGGATGGGGGGAGAGAGA
GGGGGCTCTACGCATGGGCCCATAGATCCTGGTGTTTTTCGTTGACCCCC
TGTCTTTCGCCGCCTCGGTCCTACGAATTTGAGTTCCTAAAAGCGTCGTT
GTTGCCCCAGGGCTTACCGCTTAACAACCGTGCGACCAAAGAGCAGCCCT
CTCAGCATTGAACCAGTTACTCCTGAAGCGACACCGGTTAGTACATTAGA
TACCGCCAGAGGAACACTCATTGGTAAAATGTTTACTGTACTGTATAGTT
TCTCCTATTTAGCGCAGTGAAGTGGGAGACTGTAAGATGTTAAAGAAAAT
TGTGCCGATGATTATGTTTGCAGTTGATATCCAATAGCTAGTGCTGTCCG
TGTCCCCTTTTCCATCTTCTTGAAATTTGTAATATCCTGGCCAGGACAGT
AGAAATGTACTTCGCATTTTGGAATTAAAAAAACACACACACCTGTGATC
ACAGAGACCCACCGCAGGAAAAATACCAAGTGGAACTGTAACGTCGAGGT
GCATGTAGTGAGAAAGTATGAAAAGAAAGCATCTACCGGGGAGCACGGAA
TTATTCGTGATCATTGCGTGTGACATTAACGATGAGCGATTGCCTCATCA
CATTGTGGCTCTAGTTGTTTGTAGCGCTCTTATGTAGAGACACTTCAGAC
AAACAAACTTTACGAATTCGTCCCTAATCGCACAGATACACATACACGAC
CACACATACTACAAGCGTATGTATTGGCATAGCGTATTGAAACGTGTAAT
GGGTGAGGGAGGGGGTGTAAACTTTAGGGGGGGGGTGATAAGGTGGCGAT
GCCGCACGTGTCATCTCTAAAGAAATACAGAGCTGGTACCAAGTCAGTCA
CAGTGCCTCGTAGGTTGCTTGCGGTTGCTTTTGGAGATCGTTCGCCCAAT
TTGTTATTGTTCAGCAGGACTCAAGCGGGGTTGGCGATCGTGGAAGGAGC
TAGTCGTAAATGAATCCCGATCGGCTGATTTGTGAAAAAAGAGCAAGCAA
CCGCCATCCTCAATTTAGGCTATACGTTGCTGGAAAACAGTTGCACCGAG
ATGGCGCAGCTGAGCCCTCGTTGCGAATGAGTTCGTTGCGGATTAAGTTT
ACTATCCATCCCGCTCTGTTACCACACCGAACCAGGTGGAAGCGGTAATG
TGAGACGACCCCTTGCAGGAAACAGCCTTCACCTACATGGTCAAGTACGC
GGTGTCCAACCAACATGAGCTCCTGCAACTTGTAAGTACTCGCAGTTGGG
GGGTGGATTGGTCGCTTGCTTGTCTACGGGGTGTAGCTTCGTGCTGCTCT
AGCTCCGTCCCTTGTCCCAGCGTTACGTGAATGAGGGAATTAGCCGCTAG
AGCTATTTTGAGACTCTTCCCCAACTGGGTCCCTCATACACTGATCCATC
TCCTCGCCATAATAAGTTCCGCAAGCGCCCTCGTACAGATCATAGCAAAA
CATCATCGTCGGTAACTACAAATCTTCGGCTATTGCACTGCACCTCGAGG
AATAACCTCTGTGCCGTTATTTCTCCACGTTCGATTCTTCCCGCCTTTGG
ACGCTGACCGAGGCCTAGCGCCAATGATTGTCATCGTTTTCCACAGTTCG
CTAAAATTACTTTACGATATTTGGGTGTATGTACCACCGAAACGCTTCCC
GAGTCAAACCAATGATTGTTTCTTTGACGTTATCACTTTAGATCGATCGA
TGCAAGGGGGGCATATGCTGGGAAGAGCTAAAAGACACATACGCCACAGT
GGCGAGCGACATGATGGCCATGCGACAGACGCGACCGATCATTGTAATCG
AGAACAAGGAAACTCATAAGTGAGCCATCTAAATGGTCACCCGATGCGTG
ATGCGAGAGATCGTGTGCGTATATGCAGAAAAATGAGAGTTTCCCCGGGA
CATTTCGAAACGGAGGAGCTCGACAAAGAAGGCGACATAAGTTCTCTCAG
TGGAATCCCTGCGCGAGAATATTTTTTCTTGTCGAGTAGTGCCTCTTTAA
TCCTGTATGTTGCAATGCCGCATCAGGATGAACTTGTACCCCCGAGGGGA
TGTTTTCCTCACGGAGCTCCCGGGCAAGGTCCGAATAGAGCCGGTGTCAT
CTGTCGCGAATACCCAAGAATATATGAACCAGCACATCAGAAGAGGAGAA
GCGATACGACTGTCGGGGCAATGGTTCCGGGTGTCTTCGGAGGAGGAGCC
TAGGCGGGAGAGGGAGGGTAGGTTGGCGGGAGTTCGGCGTGCAGCGAGTC
TTCTCGCATTCCGTTGTTTAGCATGTCCGTGTTGCCTAATGGTCTCTCGT
TGGTGCGATTTCCTCCGCAGTTCACAATCCCGGTGTTGTACCGTCGTAAT
TATTCTACGATGATTTATATTAAGTCATCCGCTAACTACTGCCCGCTCTG
ATTACGCTGTGACTCTTTTGTCTTGGGGTGTCGCATTTGTGTGGTGCGCC
ACAGACGGTGGGGAATCAGACACAGCGTACCGCGGCACCGCCGTCTGTGA
CAATGAACGCCGACCTGAAGTTGAGGTAGGCGGCGCTCCTGTGTCCGGGC
GGCTACTATTATGTCGAATTGTGAACCGCGCACTTTGGGGAGACTTCGTT
TCGGCTCACACGAGGCAGTATCAGGAAATCAATCCACAGCACTAAACTAA
ACGTGGTAGGCCAAACAGGAAAGGACATAATTTATTCTTGTGCGCTGCGG
TACCGACCTATGACGCTAGAGTCCCGCCGCGTAATAGGCTGCAGGGTAAC
CGATACATACGCCGAGACAATGGGCGCTCCAACGGAGGCGGAAGAAGACG
CGCAGGCAGTAACGATCCGTCGGCAGTTTCCGGGGCAGGGTGCGGCAGGA
ATAAAGCACCCCCTTCCCGTCAAAGGGGTACGTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig11909:2278..6263-

>mRNA_H-elongata_contig11909.1477.1 ID=mRNA_H-elongata_contig11909.1477.1|Name=mRNA_H-elongata_contig11909.1477.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig11909:2278..6263- (Himanthalia elongata Himel1 dioecious)
GGAACACTCTCTTCTTCAACGCCATGGCTAGGGGGAAGCGGTGCGCTTGG
GGCGACGTCGTCTTCCGTTTTCAAAGAGCCGGGAACACTCTCTTCTTCAA
CGCCATGGCTAGGGGGAAGCGGTGCGCTTGGGGCGACGTCGTCTTCCGTT
TTCAAAGAGCCGGAGGAAAAAAAAAATGTCGAGCGACACGCCGACGTCGT
GATGTATCTGAAGAGACGAACACAGTCAGGGAAAGGCCCTGAGGAAAAAA
AAAATGTCGAGCGACACGCCGACGTCGTGATGTATCTGAAGAGACGAACA
CAGTCAGGGAAAGGCCCTGCCACAATCACGGAGATCTCAGACGAGACAGA
CGTGGACCTGAAAAAGGGTAGGGACGACGAGGTCCTCGAAATTCTCATCG
CCAACCCCAAGGCCACAATCACGGAGATCTCAGACGAGACAGACGTGGAC
CTGAAAAAGGGTAGGGACGACGAGGTCCTCGAAATTCTCATCGCCAACCC
CAAGATGGCGCAGCTGAGCCCTCATGGCGCAGCTGAGCCCTCACGACCCC
TTGCAGGAAACAGCCTTCACCTACATGGTCAAGTACGCGGTGTCCAACCA
ACATGAGCTCCTGCAACTTACGACCCCTTGCAGGAAACAGCCTTCACCTA
CATGGTCAAGTACGCGGTGTCCAACCAACATGAGCTCCTGCAACTTATCG
ATCGATGCAAGGGGGGCATATGCTGGGAAGAGCTAAAAGACACATACGCC
ACAGTGGCGAGCGACATGATGGCCATGCGACAGACGCGACCGATCATTGT
AATCGAGAACAAGGAAACTCATAAATCGATCGATGCAAGGGGGGCATATG
CTGGGAAGAGCTAAAAGACACATACGCCACAGTGGCGAGCGACATGATGG
CCATGCGACAGACGCGACCGATCATTGTAATCGAGAACAAGGAAACTCAT
AAGATGAACTTGTACCCCCGAGGGGATGTTTTCCTCACGGAGCTCCCGGG
CAAGGTCCGAATAGAGCCGGTGTCATCTGTCGCGAATACCCAAGAATATA
TGAACCAGCACATCAGAAGAGGAGAAGCGATACGACTGTCGGGGCAATGG
TTCCGGGTGTCTTCGGAGGAGGAGCCTAGGCGGGAGAGGGAGGGTAGGTT
GGCGGGAGATGAACTTGTACCCCCGAGGGGATGTTTTCCTCACGGAGCTC
CCGGGCAAGGTCCGAATAGAGCCGGTGTCATCTGTCGCGAATACCCAAGA
ATATATGAACCAGCACATCAGAAGAGGAGAAGCGATACGACTGTCGGGGC
AATGGTTCCGGGTGTCTTCGGAGGAGGAGCCTAGGCGGGAGAGGGAGGGT
AGGTTGGCGGGAACGGTGGGGAATCAGACACAGCGTACCGCGGCACCGCC
GTCTGTGACAATGAACGCCGACCTGAAGTTGAGACGGTGGGGAATCAGAC
ACAGCGTACCGCGGCACCGCCGTCTGTGACAATGAACGCCGACCTGAAGT
TGAGGGTAACCGATACATACGCCGAGACAATGGGCGCTCCAACGGAGGCG
GAAGAAGACGCGCAGGCAGTAACGATCCGTCGGCAGTTTCCGGGGCAGGG
TGCGGCAGGAATAAAGCACCCCCTTCCCGTCAAAGGGGTACGTGGAGGTA
ACCGATACATACGCCGAGACAATGGGCGCTCCAACGGAGGCGGAAGAAGA
CGCGCAGGCAGTAACGATCCGTCGGCAGTTTCCGGGGCAGGGTGCGGCAG
GAATAAAGCACCCCCTTCCCGTCAAAGGGGTACGTGGA
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