mRNA_H-elongata_contig71031.14765.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71031.14765.1
Unique NamemRNA_H-elongata_contig71031.14765.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71031.14765.1 vs. uniprot
Match: A0A6H5K149_9PHAE (Glyco_hydro_114 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K149_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.730e-36
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    1 AYLTNFVSADKAVLDAEYLQFDLSFCENVSATGLDVIIKDPSLDSRRCSCQNSLTDIDCDSLLKTSAVDSSGQSSPWVIGTAVGASVAIILTVALVSAWRRRKFGTSGGG 330
            AY  NF+SA KAVLD EY QFDL+FC+NV+A+GLD+IIKD SLD+RRCSCQN  T IDCD LL  S   ++  SS WVI TAVGAS+ IIL   LV  WR RK G  G G
Sbjct:  160 AYEPNFISAGKAVLDVEYFQFDLAFCDNVTASGLDIIIKDLSLDARRCSCQNPSTHIDCDELLTQSPTVAADSSSSWVIATAVGASLFIILAATLVGLWRLRKAGGGGDG 269
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BLAST of mRNA_H-elongata_contig71031.14765.1 vs. uniprot
Match: A0A6H5LHX0_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LHX0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.670e-6
Identity = 40/127 (31.50%), Postives = 54/127 (42.52%), Query Frame = 1 
Query:   16 FVSADKAVLDAEYLQFDLSFCENVSATGLDVIIKDPSLDSRRCSCQNSLTDIDCDSLLKTSA-----------------------VDSSGQSS------PWVIGTAVGASVAIILTVALVSAWRRRK 309
            FV+A KAVLDAE+   DL  C +     +D I+K   LD +RCSC    T+ +CD +L   A                        D SG+         WVI TA+  +V   +       WRRR+
Sbjct:  212 FVTAGKAVLDAEFAVQDLGLCNDTLWHPIDFIVKSYELDEQRCSCGFPETNFECDEVLAGHASXXXXXXXXXXXXXXXXXXXXXGTDDSGEGQGGDGTPTWVIVTAIAVAVLAGMMAYGAMVWRRRR 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71031.14765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K149_9PHAE4.730e-3663.64Glyco_hydro_114 domain-containing protein n=1 Tax=... [more]
A0A6H5LHX0_9PHAE5.670e-631.50Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71031contigH-elongata_contig71031:1419..2821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycoside hydrolase superfamily
Ec32 orthologEc-18_001150.1
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.6799967-CDS-H-elongata_contig71031:1418..16311622931109.6799967-CDS-H-elongata_contig71031:1418..1631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71031 1419..1631 -
1691679702.1214583-CDS-H-elongata_contig71031:1418..16311691679702.1214583-CDS-H-elongata_contig71031:1418..1631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71031 1419..1631 -
1622931109.6945767-CDS-H-elongata_contig71031:2704..28211622931109.6945767-CDS-H-elongata_contig71031:2704..2821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71031 2705..2821 -
1691679702.1323307-CDS-H-elongata_contig71031:2704..28211691679702.1323307-CDS-H-elongata_contig71031:2704..2821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71031 2705..2821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71031.14765.1prot_H-elongata_contig71031.14765.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71031 1419..2821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71031.14765.1

>prot_H-elongata_contig71031.14765.1 ID=prot_H-elongata_contig71031.14765.1|Name=mRNA_H-elongata_contig71031.14765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
AYLTNFVSADKAVLDAEYLQFDLSFCENVSATGLDVIIKDPSLDSRRCSC
QNSLTDIDCDSLLKTSAVDSSGQSSPWVIGTAVGASVAIILTVALVSAWR
RRKFGTSGGG
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mRNA from alignment at H-elongata_contig71031:1419..2821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71031.14765.1 ID=mRNA_H-elongata_contig71031.14765.1|Name=mRNA_H-elongata_contig71031.14765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1403bp|location=Sequence derived from alignment at H-elongata_contig71031:1419..2821- (Himanthalia elongata Himel1 dioecious)
GCATATCTAACGAACTTCGTGTCTGCCGACAAGGCGGTTCTGGACGCAGA
GTACCTTCAGTTCGACCTGTCGTTCTGCGAAAACGTGTCCGCAACGGGGC
TCGACGTGATCATCAAGGTGAGTTTCTTGGGAGGAAAAAAGGAAAGAGTC
GACGGAAGGAGGAACCGGGGGGTGGGAGTTAGTAGTCGGCCAAATCTTAT
CGCTACCGGGTAATAAAATGTTAGAAAATGTGGCATTTAATGCTTGTGGA
TTGAGGGGGTGGGGGTGGGGTGAGGGTGTTTGCTGCTGCTGCTGAGGGTG
GCGTGCCACAAACGTGGTGTACGTAGCCCTGAGTTTTTTAGAGGGGTTAC
GATGTGACGATCTCTGGGACAGGTGTGTGTGTGTGTTGTGTGTGTAAGTG
TATTAAGTAAGTTTAAGAGTAAGTGTATGAATCCAGCGCCAATATTTCAG
CCATCGCAAGAGGATTTTTTATTTTGTTTTTATTTTGATCTTATTTACGG
TTGTCGTTTTATTTGAATGGCTCTGGTAAATTACTGAATCAATGAATAAA
ATCAATGGGGTTCAAGGAGTGACTTTGCTGAGGTCAACATTCAGGCTTGA
GGGAAACCACGTCGTGGTTCTGACAATCACGCTCCAGGAAGTCACACCTC
AAAATAATCACGATTCAGTAATACAAGGTCGCGAAGAGAATCACGCTCTC
TTTTGTTTTTTCCGGGACACGGTTCCGGATAGCGAAGGTCTCAGGACGTA
CTCGTACATTCTCAGGATGCGAAGGATTTATTTTTTGTGCGTGTGCGCCT
CGCTCCTTCGGAAAATCGGGATAAGGCGACTGAATCAGAGCCTGCCACAC
CCAACCCTGCCTTTTTGTGCGCCATCTCAATCATCGCCCACTTCCCCTCC
CTAGCGCCTGAGCGGGACCCTCTTCAGCAGCAATATGACAGGGAAGGTTG
CATTGGCGTCAAGGGGAGCGCTTCCAACCTTTGGACCCCCCCCCAATTCT
CTTCCCCCCTCCCTCTTTTGCTGTCAAGAAAAAAGTTATTAATACGTCAC
TCCGAAAAATTATTAATATAAAAATGACAGGCAGGGCGCTTATGCGTAGG
CACAGCGGATTCTTTCGGTTGTGTTCTTAAAAACGCCCCGCCTCGTTTAT
CCTCCCCCACCCCCCCGCCCCTTCCGCGTCCACCATGAAGGACCCCTCCT
TGGACTCCCGACGCTGCAGCTGCCAAAACTCTTTGACGGACATCGACTGC
GACTCCCTCCTGAAGACAAGCGCGGTCGATTCGAGTGGGCAATCATCCCC
CTGGGTCATCGGCACGGCCGTCGGGGCCTCGGTCGCCATCATTCTCACGG
TAGCGTTGGTGTCCGCGTGGCGGCGCAGGAAGTTCGGCACCAGCGGCGGA
GGG
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Coding sequence (CDS) from alignment at H-elongata_contig71031:1419..2821-

>mRNA_H-elongata_contig71031.14765.1 ID=mRNA_H-elongata_contig71031.14765.1|Name=mRNA_H-elongata_contig71031.14765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig71031:1419..2821- (Himanthalia elongata Himel1 dioecious)
GCATATCTAACGAACTTCGTGTCTGCCGACAAGGCGGTTCTGGACGCAGA
GTACCTTCAGTTCGACCTGTCGTTCTGCGAAAACGTGTCCGCAACGGGGC
TCGACGTGATCATCAAGGCATATCTAACGAACTTCGTGTCTGCCGACAAG
GCGGTTCTGGACGCAGAGTACCTTCAGTTCGACCTGTCGTTCTGCGAAAA
CGTGTCCGCAACGGGGCTCGACGTGATCATCAAGGACCCCTCCTTGGACT
CCCGACGCTGCAGCTGCCAAAACTCTTTGACGGACATCGACTGCGACTCC
CTCCTGAAGACAAGCGCGGTCGATTCGAGTGGGCAATCATCCCCCTGGGT
CATCGGCACGGCCGTCGGGGCCTCGGTCGCCATCATTCTCACGGTAGCGT
TGGTGTCCGCGTGGCGGCGCAGGAAGTTCGGCACCAGCGGCGGAGGGGAC
CCCTCCTTGGACTCCCGACGCTGCAGCTGCCAAAACTCTTTGACGGACAT
CGACTGCGACTCCCTCCTGAAGACAAGCGCGGTCGATTCGAGTGGGCAAT
CATCCCCCTGGGTCATCGGCACGGCCGTCGGGGCCTCGGTCGCCATCATT
CTCACGGTAGCGTTGGTGTCCGCGTGGCGGCGCAGGAAGTTCGGCACCAG
CGGCGGAGGG
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