prot_H-elongata_contig71031.14765.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig71031.14765.1
Unique Name	prot_H-elongata_contig71031.14765.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	110

Homology

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BLAST of mRNA_H-elongata_contig71031.14765.1 vs. uniprot
Match: A0A6H5K149_9PHAE (Glyco_hydro_114 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K149_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.730e-36
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 0

Query:    1 AYLTNFVSADKAVLDAEYLQFDLSFCENVSATGLDVIIKDPSLDSRRCSCQNSLTDIDCDSLLKTSAVDSSGQSSPWVIGTAVGASVAIILTVALVSAWRRRKFGTSGGG 110
            AY  NF+SA KAVLD EY QFDL+FC+NV+A+GLD+IIKD SLD+RRCSCQN  T IDCD LL  S   ++  SS WVI TAVGAS+ IIL   LV  WR RK G  G G
Sbjct:  160 AYEPNFISAGKAVLDVEYFQFDLAFCDNVTASGLDIIIKDLSLDARRCSCQNPSTHIDCDELLTQSPTVAADSSSSWVIATAVGASLFIILAATLVGLWRLRKAGGGGDG 269

[Close]

BLAST of mRNA_H-elongata_contig71031.14765.1 vs. uniprot
Match: A0A6H5LHX0_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LHX0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.670e-6
Identity = 40/127 (31.50%), Postives = 54/127 (42.52%), Query Frame = 0

Query:    6 FVSADKAVLDAEYLQFDLSFCENVSATGLDVIIKDPSLDSRRCSCQNSLTDIDCDSLLKTSA-----------------------VDSSGQSS------PWVIGTAVGASVAIILTVALVSAWRRRK 103
            FV+A KAVLDAE+   DL  C +     +D I+K   LD +RCSC    T+ +CD +L   A                        D SG+         WVI TA+  +V   +       WRRR+
Sbjct:  212 FVTAGKAVLDAEFAVQDLGLCNDTLWHPIDFIVKSYELDEQRCSCGFPETNFECDEVLAGHASXXXXXXXXXXXXXXXXXXXXXGTDDSGEGQGGDGTPTWVIVTAIAVAVLAGMMAYGAMVWRRRR 338

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig71031.14765.1 vs. uniprot

BLAST of mRNA_H-elongata_contig71031.14765.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K149_9PHAE	4.730e-36	63.64	Glyco_hydro_114 domain-containing protein n=1 Tax=...	[more]
A0A6H5LHX0_9PHAE	5.670e-6	31.50	Glyco_hydro_114 domain-containing protein n=2 Tax=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..76
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 100..110
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 77..99
None	No IPR available	TMHMM	TMhelix		coord: 77..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig71031	contig	H-elongata_contig71031:1419..2821 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig71031.14765.1	mRNA_H-elongata_contig71031.14765.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig71031 1419..2821 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig71031.14765.1 ID=prot_H-elongata_contig71031.14765.1|Name=mRNA_H-elongata_contig71031.14765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
AYLTNFVSADKAVLDAEYLQFDLSFCENVSATGLDVIIKDPSLDSRRCSC
QNSLTDIDCDSLLKTSAVDSSGQSSPWVIGTAVGASVAIILTVALVSAWR
RRKFGTSGGG