mRNA_H-elongata_contig11906.1473.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11906.1473.1
Unique NamemRNA_H-elongata_contig11906.1473.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.070e-19
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    4 RALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRSSGLRLFVFSDADYAAASNDRRPVSGVAV 267
            R  +  LMW +  TRPDI  AL A  R++H PT R WK L++I +Y+NAT ++G+ +VR SGL L V+ DA YA     RR V+G+AV
Sbjct: 1027 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAV 1114
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.090e-19
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    4 RALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRSSGLRLFVFSDADYAAASNDRRPVSGVAV 267
            R  +  LMW +  TRPDI  AL A  R++H PT R WK L++I +Y+NAT ++G+ +VR SGL L V+ DA YA     RR V+G+AV
Sbjct: 1580 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAV 1667
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.830e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 YRALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRS--SGLRLFVFSDADYAAASNDRRPVSG 258
            +RAL+ SL+W++++TRPDI NA++A AR+   P   HW+  L I  Y   T   G+ F R   SG  L  F+DADYA+ + DRR VSG
Sbjct:  163 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSG 250
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.390e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 YRALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRS--SGLRLFVFSDADYAAASNDRRPVSG 258
            +RAL+ SL+W++++TRPDI NA++A AR+   P   HW+  L I  Y   T   G+ F R   SG  L  F+DADYA+ + DRR VSG
Sbjct:  467 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSG 554
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.510e-17
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 YRALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRS--SGLRLFVFSDADYAAASNDRRPVSG 258
            +R LV SL+W++++TRPDI N+++A AR+S  P   HWK  L I  Y   T  +G+ F R   SG  L  F DADYA+ + DRR VSG
Sbjct:  534 FRGLVGSLLWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSG 621
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.830e-17
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 YRALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRS--SGLRLFVFSDADYAAASNDRRPVSG 258
            +RALV SL+W++++TRPDI N+++A AR+S  P   HWK  L I  Y   T   G+ F R   SG  L  F DADYA+ + DRR VSG
Sbjct:  217 FRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSG 304
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5JRV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.020e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    4 RALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRSSGLRLFVFSDADYAAASNDRRPVSGVAV 267
            R  +  LMW+ + TRPDI   L    + +H+PT R W  L+RI +Y+N TK++G+ +VR SGL L VF D+ YA ++ DRR  +G+AV
Sbjct:   62 REAIGCLMWL-LFTRPDIALPLNKLQKIAHSPTERKWNALVRILSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAV 148
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5KJD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.680e-16
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   22 LMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRSSGLRLFVFSDADYAAASNDRRPVSGVAV 267
            LMW+ + TRPDI   L    + +H+PT R W  L+RI +Y+N TK++G+ +VR SGL L+VF D+ YA ++ DRR  +G+AV
Sbjct:  147 LMWL-LFTRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYVRGSGLDLYVFVDSSYADSTVDRRSTTGLAV 227
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5JU54_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU54_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.360e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    4 RALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRSSGLRLFVFSDADYAAASNDRRPVSGVAV 267
            R  +  LMW+ + TRPDI   L    + +H+PT R W  L+RI +Y+N TK++G+ +VR SGL L VF D+ YA ++ DRR  +G+AV
Sbjct:  153 REAIGCLMWL-LFTRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAV 239
[Close]
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Match: A0A6H5L9N7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9N7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.390e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    4 RALVRSLMWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRFVRSSGLRLFVFSDADYAAASNDRRPVSGVAV 267
            R  +  LMW+ + TRPDI   L    + +H+PT R W  L+RI +Y+N TK++G+ +VR SGL L VF D+ YA ++ DRR  +G+AV
Sbjct:   36 REAIGCLMWL-LFTRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAV 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11906.1473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE3.070e-1948.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE3.090e-1948.86Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWK8_9PHAE2.830e-1746.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR13_9PHAE4.390e-1746.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWA6_9PHAE4.510e-1747.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KG67_9PHAE5.830e-1748.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRV3_9PHAE1.020e-1645.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJD2_9PHAE1.680e-1647.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU54_9PHAE5.360e-1645.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9N7_9PHAE5.390e-1645.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11906contigH-elongata_contig11906:292..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.7
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog15368.BRADI3G60452.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37RIF@33090,3G9AM@35493,3IM81@38820,3M33Z@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.6240423-CDS-H-elongata_contig11906:291..5341622929696.6240423-CDS-H-elongata_contig11906:291..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11906 292..534 -
1691679122.6559975-CDS-H-elongata_contig11906:291..5341691679122.6559975-CDS-H-elongata_contig11906:291..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11906 292..534 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.6402516-UTR-H-elongata_contig11906:534..5581622929696.6402516-UTR-H-elongata_contig11906:534..558Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11906 535..558 -
1691679122.667582-UTR-H-elongata_contig11906:534..5581691679122.667582-UTR-H-elongata_contig11906:534..558Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11906 535..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11906.1473.1prot_H-elongata_contig11906.1473.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11906 292..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11906.1473.1

>prot_H-elongata_contig11906.1473.1 ID=prot_H-elongata_contig11906.1473.1|Name=mRNA_H-elongata_contig11906.1473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MWMSVMTRPDIENALQACARHSHNPTARHWKGLLRIAAYVNATKEIGLRF
VRSSGLRLFVFSDADYAAASNDRRPVSGVAV
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mRNA from alignment at H-elongata_contig11906:292..558-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11906.1473.1 ID=mRNA_H-elongata_contig11906.1473.1|Name=mRNA_H-elongata_contig11906.1473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig11906:292..558- (Himanthalia elongata Himel1 dioecious)
TACCGTGCCCTTGTACGGAGCCTGATGTGGATGTCGGTAATGACGAGACC
GGACATTGAGAATGCTCTCCAAGCTTGTGCGCGTCATAGCCATAACCCTA
CCGCGCGACATTGGAAGGGACTTCTACGAATAGCCGCGTACGTGAATGCA
ACGAAAGAGATTGGTTTAAGGTTCGTGCGTAGTTCTGGCCTGAGACTTTT
TGTGTTTTCAGATGCCGATTACGCGGCGGCATCAAATGATAGGCGGCCCG
TGTCTGGTGTAGCAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig11906:292..558-

>mRNA_H-elongata_contig11906.1473.1 ID=mRNA_H-elongata_contig11906.1473.1|Name=mRNA_H-elongata_contig11906.1473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig11906:292..558- (Himanthalia elongata Himel1 dioecious)
ATGTGGATGTCGGTAATGACGAGACCGGACATTGAGAATGCTCTCCAAGC
TTGTGCGCGTCATAGCCATAACCCTACCGCGCGACATTGGAAGGGACTTC
TACGAATAGCCGCGTACGTGAATGCAACGAAAGAGATTGGTTTAAGGTTC
GTGCGTAGTTCTGGCCTGAGACTTTTTGTGTTTTCAGATGCCGATTACGC
GGCGGCATCAAATGATAGGCGGCCCGTGTCTGGTGTAGCAGTGATGTGGA
TGTCGGTAATGACGAGACCGGACATTGAGAATGCTCTCCAAGCTTGTGCG
CGTCATAGCCATAACCCTACCGCGCGACATTGGAAGGGACTTCTACGAAT
AGCCGCGTACGTGAATGCAACGAAAGAGATTGGTTTAAGGTTCGTGCGTA
GTTCTGGCCTGAGACTTTTTGTGTTTTCAGATGCCGATTACGCGGCGGCA
TCAAATGATAGGCGGCCCGTGTCTGGTGTAGCAGTG
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