mRNA_H-elongata_contig70591.14717.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70591.14717.1
Unique NamemRNA_H-elongata_contig70591.14717.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 3.330e-48
Identity = 65/70 (92.86%), Postives = 70/70 (100.00%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPPPGWFAGEKW 210
            YKKELSPL+PPACRFLPTCSVYGV+AIEKFGPTKGAVLTAWRLMRCNPFAGYG+DYP+WPPPGWFAGE+W
Sbjct:   86 YKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 155          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.710e-33
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPPPGWFAG 201
            YK+E+SPL+PPACRF PTCSVY VE+IE+FG  +G VLTAWRL+RC P  GYG D P+WPPP WFAG
Sbjct:   75 YKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 141          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: A0A7S1U9Q3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.790e-32
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPPPGWFAG 201
            YK+E+SP M PACRFLPTCS Y +++I+ +GP KG VLTAWR++RCNPF G G D P+WPPPGWFAG
Sbjct:   82 YKREISPSMAPACRFLPTCSGYSIDSIKTYGPWKGLVLTAWRILRCNPFGGSGYDPPQWPPPGWFAG 148          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.890e-31
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPPPGWFAG 201
            YK+ +SPL+P ACRF PTCS Y +E+++KFGP KGAVLTAWRL+RCNP  G G D P+WPPPGW AG
Sbjct:   75 YKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 141          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.460e-30
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPPPGWFAG 201
            YK+ +SPL+P ACRF PTCS Y +E+++KFGP KGAVLTAWRL+RCNP  G G D P+WPPPGW AG
Sbjct:  173 YKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: A0A7S0QB70_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QB70_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 2.850e-30
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPPPGWFAGEK 207
            YK+ LSPL+PP CRF+PTCS Y +++ E+F P + AVLT WRL+RCNP AGYG+D P+WPPPG++AG +
Sbjct:   48 YKRALSPLLPPGCRFVPTCSEYAIQSFEQFSPVQAAVLTVWRLVRCNPTAGYGVDAPQWPPPGYWAGSQ 116          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: B8BR73_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR73_THAPS)

HSP 1 Score: 108 bits (271), Expect = 1.120e-29
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPPPGWFAGE 204
            YK+ +SPL+PPACRFLPTCS YGV+AIE+FGP+KG +LTAWRL RC+PF G G D P+WPP  +  G 
Sbjct:   12 YKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYGS 79          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: A0A7S2R8H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8H5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.630e-29
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPP 183
            YK  +SPL+PPACRFLPTCS YGV+AIE+FGP+KG VLTAWRL+RC+PF G G D P+WPP
Sbjct:   74 YKNVISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVVLTAWRLLRCSPFGGKGYDPPKWPP 134          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: A0A7S2ENE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENE8_TRICV)

HSP 1 Score: 112 bits (280), Expect = 4.470e-29
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPP 183
            YK+ +SPL+PPACRF+PTCS YGV+AI++FGPTKGA+LTAWRLMRC+PF G G D PRWPP
Sbjct:  181 YKQFISPLLPPACRFVPTCSQYGVQAIQEFGPTKGAMLTAWRLMRCSPFGGKGYDPPRWPP 241          
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Match: A0A7S1XBZ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBZ4_9RHOD)

HSP 1 Score: 107 bits (268), Expect = 9.280e-29
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 YKKELSPLMPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPRWPPPGWFAGE 204
            YK+++SPLMPP CRFLP+CS Y +EAI++FGP KG VLTAWR++RCNPF G G D P+WPP  + +G 
Sbjct:   49 YKEQISPLMPPNCRFLPSCSSYSIEAIQEFGPAKGLVLTAWRILRCNPFGGAGYDPPQWPPVHFRSGS 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70591.14717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF53_ECTSI3.330e-4892.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZNH9_9STRA5.710e-3371.64Hemolytic domain-containing protein n=1 Tax=Tribon... [more]
A0A7S1U9Q3_9STRA8.790e-3268.66Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A4D9DFE3_9STRA1.890e-3168.66Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TML8_9STRA2.460e-3068.66Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S0QB70_9EUKA2.850e-3062.32Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
B8BR73_THAPS1.120e-2966.18Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2R8H5_9STRA1.630e-2973.77Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2ENE8_TRICV4.470e-2975.41Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1XBZ4_9RHOD9.280e-2963.24Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70591contigH-elongata_contig70591:2367..2579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue2.3e-32
Seed eggNOG ortholog2880.D8LF53
KEGG koko:K08998
EggNOG free text desc.Haemolytic
EggNOG OGs2S1FR@2759,COG0759@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.3342803-CDS-H-elongata_contig70591:2366..25551622931104.3342803-CDS-H-elongata_contig70591:2366..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70591 2367..2555 -
1691679699.6736493-CDS-H-elongata_contig70591:2366..25551691679699.6736493-CDS-H-elongata_contig70591:2366..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70591 2367..2555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.3536525-UTR-H-elongata_contig70591:2555..25791622931104.3536525-UTR-H-elongata_contig70591:2555..2579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70591 2556..2579 -
1691679699.6874835-UTR-H-elongata_contig70591:2555..25791691679699.6874835-UTR-H-elongata_contig70591:2555..2579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70591 2556..2579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70591.14717.1prot_H-elongata_contig70591.14717.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70591 2367..2555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70591.14717.1

>prot_H-elongata_contig70591.14717.1 ID=prot_H-elongata_contig70591.14717.1|Name=mRNA_H-elongata_contig70591.14717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDYPR
WPPPGWFAGEKW*
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mRNA from alignment at H-elongata_contig70591:2367..2579-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70591.14717.1 ID=mRNA_H-elongata_contig70591.14717.1|Name=mRNA_H-elongata_contig70591.14717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig70591:2367..2579- (Himanthalia elongata Himel1 dioecious)
TACAAGAAGGAGCTATCGCCACTGATGCCTCCGGCGTGTCGCTTCCTGCC GACCTGTTCTGTGTATGGGGTGGAAGCGATCGAGAAGTTCGGCCCCACCA AGGGCGCAGTCCTAACGGCGTGGCGATTGATGCGGTGCAACCCCTTCGCG GGCTATGGGATTGACTATCCGCGATGGCCACCACCGGGGTGGTTTGCCGG TGAAAAGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig70591:2367..2579-

>mRNA_H-elongata_contig70591.14717.1 ID=mRNA_H-elongata_contig70591.14717.1|Name=mRNA_H-elongata_contig70591.14717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig70591:2367..2579- (Himanthalia elongata Himel1 dioecious)
ATGCCTCCGGCGTGTCGCTTCCTGCCGACCTGTTCTGTGTATGGGGTGGA
AGCGATCGAGAAGTTCGGCCCCACCAAGGGCGCAGTCCTAACGGCGTGGC
GATTGATGCGGTGCAACCCCTTCGCGGGCTATGGGATTGACTATCCGCGA
TGGCCACCACCGGGGTGGTTTGCCGGTGAAAAGTGGTGAATGCCTCCGGC
GTGTCGCTTCCTGCCGACCTGTTCTGTGTATGGGGTGGAAGCGATCGAGA
AGTTCGGCCCCACCAAGGGCGCAGTCCTAACGGCGTGGCGATTGATGCGG
TGCAACCCCTTCGCGGGCTATGGGATTGACTATCCGCGATGGCCACCACC
GGGGTGGTTTGCCGGTGAAAAGTGGTGA
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