mRNA_H-elongata_contig704.14697.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig704.14697.1
Unique NamemRNA_H-elongata_contig704.14697.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 418 bits (1074), Expect = 3.960e-138
Identity = 227/452 (50.22%), Postives = 296/452 (65.49%), Query Frame = 1
Query:    1 LVVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKN---------------------CLYVYIYEDETGFAI-LTLYVDDILLLS----ASKTLLN---------------------------------KLKKKLMNRTITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK 1179
            +V QG++Q+PG+DCG T+APVCR QS+RM+  I  E +     +DV TAFL A+ +E+VFV+  PG+E  DK G  +VMKL KSLYGL QS  N                     C+Y+Y   D  G  I LTLYVDD+LL      A K LL+                                 K+++     T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR+M+KP+K HM  AKH L YLAG+ DFSIT K+GGF+LA FSD+NW N+P +G+STSSY+ +LANAP+SF+ GL+GLTA ST+EAELVA+AL MKEAV CSNM+ EL   + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++EL  EGKISIHYV T+D LAD+GTKH +K
Sbjct:  195 VVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY---DHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNK 643          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 3.720e-131
Identity = 224/439 (51.03%), Postives = 292/439 (66.51%), Query Frame = 1
Query:    1 LVVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKN---------------------CLYVYIYEDETGFAI-LTLYVDDILLLSASKTLLNKLKKKLMNR------------------------TITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK 1179
            +V QG++Q+PG+DCG T+APVCR QS+RM+  I  E +     +DV TAFL A+ +E+VFV+  PG+E  DK G  +VMKL KSLYGL QS  N                     C+Y+Y   D  G  I LTLYVDD+LL       ++ +K KL  R                        T+TISQ+ Y + +++R+G+    P  TPG G E+S  QPE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR M+KP+K HM  AKH L YLAG+ DFSIT K+GGF+LA FSD+NW N+P +G+STSSY+ +LANAP+SF+ GL+GLTA ST+EAELVA+AL M EAV  SNM+ EL F + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++EL  EGKISIHYV T+D LAD+GTKH +K
Sbjct: 1216 VVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY---DHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNK 1651          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 399 bits (1025), Expect = 2.050e-129
Identity = 212/412 (51.46%), Postives = 281/412 (68.20%), Query Frame = 1
Query:    1 LVVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKNCLY-------------------VYIYEDETGFAILTLYVDDILLLSASKTLLNKLKKKLMNRTITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK 1179
            LV +G++Q+PG DCGGTFAPVCR QSIRM+ AI  E D +V  LDV+TAFL A+ EE+VFV++ PGYE  +   + LVMKL+KSL GL QS ++ L                    VYIY+      +LTLYVDD+L++                        +YT  ++ R+GM S  P  T G GPELS+ QPEE LLN E K+RYQAI G+VMYLAQVTRYDI+Y  +Q ARAMS P+K HMG AKHLL YL+GS DFSIT K+GGF L   S+AN  ++  +G+S SSYI++++ AP S K GL+ LTA ST+EAELVA+AL MKE + C+NM+ EL F   F S PL+ID+T+ L+V GN+T+    KH+ALR+F+++++ +EG+ISIHY+ T+D LAD+GT++L+K
Sbjct:  367 LVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLIIRGGAH---------------HQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNK 763          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 375 bits (962), Expect = 3.850e-124
Identity = 207/409 (50.61%), Postives = 266/409 (65.04%), Query Frame = 1
Query:   94 AIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKS-GVPLVMKLKKSLYGLRQSAKN---------------------CLYVYIYEDETGFAI-LTLYVDDILLLSASKTLLNKLKKKLMNR------------------------TITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK 1179
            A   E +     +DV TAFL A+ +E+VFV+  PG+E  DK  G  +VMKL KSLYGL QS  N                     C+Y+Y   D  G  I LTLYVDD+LL       ++ +K KL  R                        T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR M+KP+K HM  AKH L YLAG+ DFSIT K+GGF+LA FSD+NW N+P +G+STSSY+ +LANAP+SF+ GL+GLTA ST+EAELVA+AL MKEAV CSNM+ EL F + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++EL  EGKISIHY  T+D LAD+GTKH +K
Sbjct:   17 APTVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLY---DHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNK 422          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 7.600e-121
Identity = 210/438 (47.95%), Postives = 274/438 (62.56%), Query Frame = 1
Query:    1 LVVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKN---------------------CLYVYIYEDETGFAI-LTLYVDDILLLSASKTLLNKLKKKLMNR------------------------TITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLS 1176
            +V QG++Q+PG+DCG T+APVCR QS+RM+  I  + +     +D                            G  +VMKL KSLYGL QS  N                     C+Y+Y   D  G  I LTLYVDD+LL       ++ +K KL  R                        T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR M+KP+K HM  AKH L YLAG+ DFSIT K+GGF+LA FSD+NW N+P +G+STSSY+ +LANAP+SF+ GL+GLTA ST+EAELVA+AL MKEAV CSNM+ EL F + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++EL  EGKISIHYV+T+D LAD+GTKH +
Sbjct:  574 VVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFNLIFDQMD---------------------------DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY---DHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFN 981          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 3.080e-110
Identity = 186/396 (46.97%), Postives = 257/396 (64.90%), Query Frame = 1
Query:   73 QSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKNCLY-------------------VYIYEDETGFAILTLYVDDILLLSASKTLLN--------KLKKKLMNRTITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK 1179
            QS+R++L I  E D  +  +DV  AFL A+ +EDV+V+  PG+E   ++G  LVM L+KSLY L QS  N  +                   VY Y+ +     LTL VDD+LL   +   L+        ++K+     T++IS++ Y++ ++ R+GM +  P  TPG+GP  S  QPEE LLN+EE RRYQ I G ++YL+Q+ RYDI+YA +QLAR M+KP+K HMG AK    YLAG+  F I  K+GGF+L  F+D+NW N+P +G+STSS++ +L +AP++FK GL+ LT  ST+E ELVAAAL +KEAV CSN++ EL F +    VPLY DNT+ LH  GNR+Y    KHIALR+FF++EL  EG+I+IHYV      AD+GTKHL+K
Sbjct:  310 QSVRVLLCITVEFDLIIVQMDVTAAFLYADIQEDVYVEQPPGFEVKGENGEDLVMLLQKSLYWLAQSPGNWFHTIDPFLISIGFVPLKPDPCVYFYDHDGSQMYLTLSVDDLLLAGNNSDALSIASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNK 705          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 1.120e-99
Identity = 187/439 (42.60%), Postives = 263/439 (59.91%), Query Frame = 1
Query:    1 LVVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKS-GVPLVMKLKKSLYGLRQS---------------------AKNCLYVYIYEDETGFAILTLYVDDILLLSASKTLLNKLKKKLMNR------------------------TITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK 1179
            LV  G  Q  G   G  +APV R  SIRM+ AI  E  +EV+ LDV  AFLNA  + DV+V+  PG E  D + G  +V KL+KSLYGL QS                     +  C+Y+++  DE    IL +YVDDIL+   +K ++++ KK+LM+                         T+ ISQ  Y  D++QRYGM+  NP  TPG G ELS  QP+++LL  E+K+R+QAITG+++YLAQ TRYD+ YAV+QL RA + PA+ HM  AKHLL YL G+ D  I  K+G FRL+ F+D+++  +P +GRST+ Y+  L    IS+    + L A +T+EAEL A + + +EAV  SN + E+ F ++F SVP+  D+T AL VA N  +  R KHIALR+FF++EL +  +I++H+  +   LAD+ TKHL K
Sbjct:  284 LVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDE--LTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPK 719          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 3.130e-98
Identity = 188/457 (41.14%), Postives = 267/457 (58.42%), Query Frame = 1
Query:    1 LVVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKNCLY-VYIYEDETGFAILT----LYVDDILLLSASKTLLNKLKKKLMNR-TITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLAR-----------------------AMSKPAKAHMGVAK-----------------------------------HLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK 1179
            LV QG++Q+PG+ CG T+APVCR QSIRM+  I  + + E+  +DV TAFL  +  E+VFV+  PG+E  +K G  LVM+L++SLYGL QS  N  + +  +  E GF  L     +Y+  +  +   K +L    KK  NR T+TISQ+ Y++ +++R+GM    P  TPG G ELS  QPE+ LL+EEE RRYQ I G +MY+AQV RYD+++ +  +                         A SK      G+++                                     L Y+A    + +     G +LA FS++NW N+P +G+S+S Y+ +L NAP+SFK G++G TA ST+EAEL+A+AL MKEAV CSN++ EL   + F  VPLY DNT+ LH  GNR++  R KHIALR+F+++EL  EG+ISIHY+ T   +AD+GTKHL+K
Sbjct:  700 LVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVFVEQPPGFEVKNKDGGDLVMQLQESLYGLAQSPSNWFHTIDPFLVEIGFVSLKSDTCVYLFKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTPGYGSELSNKQPEDTLLDEEETRRYQGIVGCLMYIAQVLRYDVMFKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTPGYGSELSNKQPEDTLLDEEETRRYQGIVGCLMYIAQVLRYDVI----GSKLATFSESNWANNPDNGKSSSCYLTMLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNK 1152          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 2.800e-96
Identity = 162/320 (50.62%), Postives = 220/320 (68.75%), Query Frame = 1
Query:    1 LVVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKNCLYV---YIYEDET--GFAILTLYVDDILLLSASKTLLN-KLKKKLMNRTITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVV 942
            LV QG++Q+PG+DCG T+APVCR QSIRM+  IV + + E+  +DV TAF  A+  E+VFV+  PG+E  DK G  LVM+L+KSLYGL Q A N  +    ++ E+ +    +   +Y+  +  +   K +L  ++K+     T+TISQK YT+ +++R+GM    P  TPG G ELS  QPE+ LL EEE RRYQ I G +MY+AQV RYDI+YA  QLAR M KP+K HM  AKH L Y+AG+ +F IT K  GF+LA FSD+NW N+P +G+STS Y+ +L N P+S K G++G TA ST+EAEL+A+AL MKEAV+
Sbjct:  115 LVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFVERPPGFEVKDKDGGDLVMQLQKSLYGLAQIASNWFHTIDPFLVENISVPRKSDTCVYLFKMTDMGEVKLVLGMEIKRDHNQGTLTISQKAYTKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEAELIASALAMKEAVL 434          
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 9.490e-95
Identity = 181/392 (46.17%), Postives = 229/392 (58.42%), Query Frame = 1
Query:    4 VVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAFLNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKNCLYVYIYEDETGFAILTLYVDDILLLSASKTLLNKLKKKLMNRTITISQKDYTEDVVQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGGFRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEAELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYGPRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK 1179
            V   ++Q+PG D GGTFAPVCR QSIRM+LAI  E D +V  LDV+TAFL A+ EED       G  TN                                                                       SQ++Y   ++ R+GM S  P  T G GPELS                  AI G+V+YLAQ+TRYDI+Y  +QLARAMS P+K HMG AKHLL YL+GS DFSIT K+GGF L   SDANW N+P + +S SSYI++++ AP+SFK GL+ LTA ST+EAELVAAAL MKE + C+NM+ EL F   F S PLYI NT+ LHV GN+T+  R KH+ALR+F+++E+ +EG+ISIHY+ T+D LAD+GTKHL+K
Sbjct:  381 VTGRWNQVPGRDWGGTFAPVCRLQSIRMLLAIAAEKDLDVIQLDVKTAFLYADIEED-------GELTN-----------------------------------------------------------------------SQENYPNSILDRFGMGSWKPLSTAGFGPELS------------------AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNK 675          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig704.14697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE3.960e-13850.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE3.720e-13151.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE2.050e-12951.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE3.850e-12450.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE7.600e-12147.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG39_9PHAE3.080e-11046.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF46_9PHAE1.120e-9942.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K129_9PHAE3.130e-9841.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN4_9PHAE2.800e-9650.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBU1_9PHAE9.490e-9546.17CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig704contigH-elongata_contig704:569..1871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score204.5
Seed ortholog evalue8.9e-50
Seed eggNOG ortholog36914.XP_001527393.1
EggNOG free text desc.Transposable element
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,47E39@766764,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1179
Cds size1179
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig704.14697.1prot_H-elongata_contig704.14697.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig704 569..1871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.9436615-CDS-H-elongata_contig704:568..13371622931101.9436615-CDS-H-elongata_contig704:568..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig704 569..1337 -
1691679698.705052-CDS-H-elongata_contig704:568..13371691679698.705052-CDS-H-elongata_contig704:568..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig704 569..1337 -
1622931101.958087-CDS-H-elongata_contig704:1409..15351622931101.958087-CDS-H-elongata_contig704:1409..1535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig704 1410..1535 -
1691679698.7213843-CDS-H-elongata_contig704:1409..15351691679698.7213843-CDS-H-elongata_contig704:1409..1535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig704 1410..1535 -
1622931101.9726646-CDS-H-elongata_contig704:1587..18711622931101.9726646-CDS-H-elongata_contig704:1587..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig704 1588..1871 -
1691679698.7302914-CDS-H-elongata_contig704:1587..18711691679698.7302914-CDS-H-elongata_contig704:1587..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig704 1588..1871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig704.14697.1

>prot_H-elongata_contig704.14697.1 ID=prot_H-elongata_contig704.14697.1|Name=mRNA_H-elongata_contig704.14697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=393bp
LVVQGFSQIPGVDCGGTFAPVCRRQSIRMMLAIVTELDYEVHMLDVQTAF
LNANAEEDVFVKITPGYETNDKSGVPLVMKLKKSLYGLRQSAKNCLYVYI
YEDETGFAILTLYVDDILLLSASKTLLNKLKKKLMNRTITISQKDYTEDV
VQRYGMKSGNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQAITGAVMYLA
QVTRYDILYAVNQLARAMSKPAKAHMGVAKHLLCYLAGSADFSITCKQGG
FRLAVFSDANWDNSPASGRSTSSYIVILANAPISFKVGLKGLTAHSTIEA
ELVAAALTMKEAVVCSNMILELDFDESFGSVPLYIDNTSALHVAGNRTYG
PRAKHIALRYFFVQELEEEGKISIHYVKTKDQLADLGTKHLSK
back to top

mRNA from alignment at H-elongata_contig704:569..1871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig704.14697.1 ID=mRNA_H-elongata_contig704.14697.1|Name=mRNA_H-elongata_contig704.14697.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1303bp|location=Sequence derived from alignment at H-elongata_contig704:569..1871- (Himanthalia elongata Himel1 dioecious)
CTCGTCGTGCAAGGATTTTCGCAGATCCCTGGCGTCGACTGCGGCGGCAC CTTCGCTCCCGTATGCAGGCGCCAGAGCATTCGCATGATGCTCGCAATCG TGACGGAGCTAGACTATGAGGTGCACATGCTAGATGTGCAGACGGCATTC CTCAACGCCAACGCCGAAGAAGACGTGTTCGTCAAGATAACGCCCGGCTA CGAGACCAACGACAAGTCAGGAGTTCCTCTTGTCATGAAGCTCAAGAAGA GCTTGTACGGTCTCCGACAGAGCGCGAAGAACTGGTTCGGCATGATGGAC GTGGAGCTCGCCGTTATCGGTTTCCGCCTGCTCAAGTCTGTACGTGTATA TCTACGAGGACGAGACCGGCTTCGCTATCCTGACGCTCTACGTGGACGAT ATTTTGCTCCTTAGCGCCAGCAAGACTTTGCTCAACAAGCTCAAGAAGAA GCTGATGAACCGGTTCGAGATGCCCGACATGGGCGACGTGTCGAAAGTCC TTGGCATGAACGTCACCCGCGACCATGAGAAGAGGACTATCACCATTAGT CAGAAGGATTACACGGAGGACGTGGTGCAGCGCTACGGTATGAAAAGCGG CAACCCCGCGTATACCCCCGGAGTAGGGCCGGAGCTGTCTCTAAACCAAC CGGAGGAGAAGCTGCTAAACGAGGAAGAGAAGCGGCGCTACCAGGCAATC ACTGGAGCCGTGATGTACCTTGCACAGGTCACCCGCTACGACATTCTCTA CGCAGTCAATCAGCTGGCGAGGGCCATGTCCAAGCCCGCGAAAGCTCACA TGGGGGTGGCCAAGCACCTGCTTTGCTACTTGGCCGGATCCGCAGACTTC TCCATCACCTGCAAGCAAGGTGGTTTTAGGCTAGCTGTCTTTTCAGATGC CAACTGGGACAACAGCCCAGCCAGCGGCAGATCTACGTCATCGTACATCG TGATTCTGGCCAACGCCCCGATCAGCTTCAAAGTGGGACTGAAGGGGCTG ACCGCACACTCCACGATAGAGGCAGAGCTCGTGGCGGCAGCTCTGACAAT GAAGGAGGCGGTGGTCTGTTCCAATATGATTCTGGAGCTTGACTTCGATG AGAGCTTCGGCAGCGTGCCGCTGTACATCGACAACACGTCGGCACTGCAC GTCGCTGGCAACCGCACCTACGGCCCTCGTGCAAAGCACATCGCGCTGAG GTATTTTTTCGTGCAAGAGCTGGAAGAGGAGGGCAAGATCAGCATACACT ACGTCAAGACCAAGGATCAGCTGGCGGACTTGGGCACCAAGCACCTTAGC AAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig704:569..1871-

>mRNA_H-elongata_contig704.14697.1 ID=mRNA_H-elongata_contig704.14697.1|Name=mRNA_H-elongata_contig704.14697.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2358bp|location=Sequence derived from alignment at H-elongata_contig704:569..1871- (Himanthalia elongata Himel1 dioecious)
CTCGTCGTGCAAGGATTTTCGCAGATCCCTGGCGTCGACTGCGGCGGCAC
CTTCGCTCCCGTATGCAGGCGCCAGAGCATTCGCATGATGCTCGCAATCG
TGACGGAGCTAGACTATGAGGTGCACATGCTAGATGTGCAGACGGCATTC
CTCAACGCCAACGCCGAAGAAGACGTGTTCGTCAAGATAACGCCCGGCTA
CGAGACCAACGACAAGTCAGGAGTTCCTCTTGTCATGAAGCTCAAGAAGA
GCTTGTACGGTCTCCGACAGAGCGCGAAGAACTGCTCGTCGTGCAAGGAT
TTTCGCAGATCCCTGGCGTCGACTGCGGCGGCACCTTCGCTCCCGTATGC
AGGCGCCAGAGCATTCGCATGATGCTCGCAATCGTGACGGAGCTAGACTA
TGAGGTGCACATGCTAGATGTGCAGACGGCATTCCTCAACGCCAACGCCG
AAGAAGACGTGTTCGTCAAGATAACGCCCGGCTACGAGACCAACGACAAG
TCAGGAGTTCCTCTTGTCATGAAGCTCAAGAAGAGCTTGTACGGTCTCCG
ACAGAGCGCGAAGAACTGTCTGTACGTGTATATCTACGAGGACGAGACCG
GCTTCGCTATCCTGACGCTCTACGTGGACGATATTTTGCTCCTTAGCGCC
AGCAAGACTTTGCTCAACAAGCTCAAGAAGAAGCTGATGAACCGTCTGTA
CGTGTATATCTACGAGGACGAGACCGGCTTCGCTATCCTGACGCTCTACG
TGGACGATATTTTGCTCCTTAGCGCCAGCAAGACTTTGCTCAACAAGCTC
AAGAAGAAGCTGATGAACCGGACTATCACCATTAGTCAGAAGGATTACAC
GGAGGACGTGGTGCAGCGCTACGGTATGAAAAGCGGCAACCCCGCGTATA
CCCCCGGAGTAGGGCCGGAGCTGTCTCTAAACCAACCGGAGGAGAAGCTG
CTAAACGAGGAAGAGAAGCGGCGCTACCAGGCAATCACTGGAGCCGTGAT
GTACCTTGCACAGGTCACCCGCTACGACATTCTCTACGCAGTCAATCAGC
TGGCGAGGGCCATGTCCAAGCCCGCGAAAGCTCACATGGGGGTGGCCAAG
CACCTGCTTTGCTACTTGGCCGGATCCGCAGACTTCTCCATCACCTGCAA
GCAAGGTGGTTTTAGGCTAGCTGTCTTTTCAGATGCCAACTGGGACAACA
GCCCAGCCAGCGGCAGATCTACGTCATCGTACATCGTGATTCTGGCCAAC
GCCCCGATCAGCTTCAAAGTGGGACTGAAGGGGCTGACCGCACACTCCAC
GATAGAGGCAGAGCTCGTGGCGGCAGCTCTGACAATGAAGGAGGCGGTGG
TCTGTTCCAATATGATTCTGGAGCTTGACTTCGATGAGAGCTTCGGCAGC
GTGCCGCTGTACATCGACAACACGTCGGCACTGCACGTCGCTGGCAACCG
CACCTACGGCCCTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTGC
AAGAGCTGGAAGAGGAGGGCAAGATCAGCATACACTACGTCAAGACCAAG
GATCAGCTGGCGGACTTGGGCACCAAGCACCTTAGCAAGGACTATCACCA
TTAGTCAGAAGGATTACACGGAGGACGTGGTGCAGCGCTACGGTATGAAA
AGCGGCAACCCCGCGTATACCCCCGGAGTAGGGCCGGAGCTGTCTCTAAA
CCAACCGGAGGAGAAGCTGCTAAACGAGGAAGAGAAGCGGCGCTACCAGG
CAATCACTGGAGCCGTGATGTACCTTGCACAGGTCACCCGCTACGACATT
CTCTACGCAGTCAATCAGCTGGCGAGGGCCATGTCCAAGCCCGCGAAAGC
TCACATGGGGGTGGCCAAGCACCTGCTTTGCTACTTGGCCGGATCCGCAG
ACTTCTCCATCACCTGCAAGCAAGGTGGTTTTAGGCTAGCTGTCTTTTCA
GATGCCAACTGGGACAACAGCCCAGCCAGCGGCAGATCTACGTCATCGTA
CATCGTGATTCTGGCCAACGCCCCGATCAGCTTCAAAGTGGGACTGAAGG
GGCTGACCGCACACTCCACGATAGAGGCAGAGCTCGTGGCGGCAGCTCTG
ACAATGAAGGAGGCGGTGGTCTGTTCCAATATGATTCTGGAGCTTGACTT
CGATGAGAGCTTCGGCAGCGTGCCGCTGTACATCGACAACACGTCGGCAC
TGCACGTCGCTGGCAACCGCACCTACGGCCCTCGTGCAAAGCACATCGCG
CTGAGGTATTTTTTCGTGCAAGAGCTGGAAGAGGAGGGCAAGATCAGCAT
ACACTACGTCAAGACCAAGGATCAGCTGGCGGACTTGGGCACCAAGCACC
TTAGCAAG
back to top