mRNA_H-elongata_contig70282.14685.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70282.14685.1
Unique NamemRNA_H-elongata_contig70282.14685.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.640e-57
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 1
Query:    1 RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
            RY +ETYDKIK+GVDFYWTGTKILG+DVGYALTLVSKA QGSIL PREVRTLRRTAKDC+TFIPFVVILIFPLTPVGHVLVFSFIQRFFP+FFPSTYTDRRQNLL
Sbjct:  648 RYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVVILIFPLTPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLL 752          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.760e-56
Identity = 93/105 (88.57%), Postives = 101/105 (96.19%), Query Frame = 1
Query:    1 RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
            RY +ETYDKIK+G+DFYWTGTKILG+DVGYALTLVSKA QGSIL PREVRTLRRTAKDC+TFIPFV+ILI PL+PVGHVLVFSFIQRFFP+FFPSTYTDRRQNLL
Sbjct:  465 RYAKETYDKIKSGLDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLL 569          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.390e-45
Identity = 76/105 (72.38%), Postives = 90/105 (85.71%), Query Frame = 1
Query:    1 RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
            RYVRET +K+++ +DFY TGTK+LG D+ YAL LV KA QG  LKPREVRTLRR+ KD LT IP ++ILI PL+PVGHVLVFSFIQR+FPDFFPST+T+RRQNLL
Sbjct:  157 RYVRETVEKLRSALDFYVTGTKLLGQDIQYALALVGKAIQGYTLKPREVRTLRRSGKDLLTLIPTIIILILPLSPVGHVLVFSFIQRYFPDFFPSTFTERRQNLL 261          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.790e-40
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 1
Query:    4 YVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNL 312
            YV+++  KIKNGV FY TG K+L SD+ YA  L+S+AAQG  LKPREVRTL+RTAKD LT IPF +ILIFPLTP+GHVLVFS IQR FPDFFPST+T+RRQNL
Sbjct:  602 YVQDSIGKIKNGVSFYVTGAKLLTSDLQYAWWLISRAAQGYTLKPREVRTLQRTAKDLLTLIPFTIILIFPLTPIGHVLVFSLIQRIFPDFFPSTFTERRQNL 704          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7S2SGM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGM0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.830e-38
Identity = 65/99 (65.66%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   19 YDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
            + K++ G+ FY TGT++LG D+ YA++L+ KA QG+ L PRE RTLRRTAKD +T +PFV+IL+ PL+PVGHVLVFSFIQR FPDF PSTYT+RRQNL+
Sbjct:  242 WSKLQAGLSFYTTGTRLLGDDLNYAVSLLGKAVQGTTLAPREARTLRRTAKDLVTLVPFVIILLIPLSPVGHVLVFSFIQRVFPDFMPSTYTERRQNLM 340          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7S2X822_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2X822_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 1.240e-37
Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   10 RETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
            ++T  K+K  + FY  GTK+LG+D+ YAL L+++A  G  LKPRE R L+RTAKD LT +PF +IL+ PLTPVGHVLVFS IQ+FFPDF+PS YT+RRQNL+
Sbjct:   62 KDTVTKLKMALSFYVLGTKLLGNDIQYALWLIARAIDGDTLKPREARMLQRTAKDLLTLLPFTIILLIPLTPVGHVLVFSAIQKFFPDFYPSPYTERRQNLV 163          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: L1IDU4_GUITC (LETM1 domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IDU4_GUITC)

HSP 1 Score: 141 bits (355), Expect = 7.020e-37
Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 1
Query:   25 KIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
            K  +G  FY  G+K+LG+DV YA+ L+ KAA G  L+PREVRTLRRTAKD +TFIPF++IL+ PL+PVGHVLVFSFIQRFFPDFFP+ YTDRRQNL+
Sbjct:  590 KFADGARFYVEGSKLLGTDVQYAVRLIIKAALGDTLQPREVRTLRRTAKDLITFIPFIIILLIPLSPVGHVLVFSFIQRFFPDFFPTPYTDRRQNLM 686          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7J7ICI1_9RHOD (LETM1 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ICI1_9RHOD)

HSP 1 Score: 134 bits (336), Expect = 8.790e-37
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    1 RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
            +Y+ E   K K G +FYW G ++LG D+ Y L L+ +AA G  L PREVRT+RRT +D LT +PF ++L  PLTPVGHV+VFSFIQR+FP FFPST+TD+RQ L+
Sbjct:   55 QYLAEMSQKTKEGGEFYWRGVRLLGGDIMYTLRLIQRAAAGYTLTPREVRTIRRTGRDILTLVPFGILLALPLTPVGHVMVFSFIQRYFPSFFPSTFTDKRQELM 159          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7S2XTH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTH3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.670e-36
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    4 YVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNL 312
            +VRE + KI+ GV F+  G K+ G D  YA  LV++AA G  L+PREVRTLRRT KD  T IP  +ILI PL+PVGHVLVFSFIQRFFPDFFPS++TDRRQNL
Sbjct:  195 FVRENFQKIQEGVAFFVLGLKLFGQDAQYAGWLVTRAAGGYTLQPREVRTLRRTVKDLFTLIPCAIILIIPLSPVGHVLVFSFIQRFFPDFFPSSFTDRRQNL 297          
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7S3E6R9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E6R9_9RHOD)

HSP 1 Score: 132 bits (332), Expect = 5.310e-36
Identity = 61/97 (62.89%), Postives = 79/97 (81.44%), Query Frame = 1
Query:   25 KIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
            K+K G +F++ G ++L  DV YA  L+ KAA G IL PREVRTLRRT +D ++FIPF +IL+ PLTP+GHVLVFSFIQRFFPDFFP+T+++RRQ L+
Sbjct:  124 KMKEGTEFFFRGLRLLAGDVAYAFRLIRKAAVGFILSPREVRTLRRTGRDLISFIPFSIILLLPLTPIGHVLVFSFIQRFFPDFFPTTFSERRQQLM 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LQ87_9PHAE1.640e-5792.38LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LP03_ECTSI1.760e-5688.57LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CA55_9STRA2.390e-4572.38LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A4D9D1V1_9STRA1.790e-4072.82LETM1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2SGM0_9STRA3.830e-3865.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2X822_9EUKA1.240e-3761.76Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
L1IDU4_GUITC7.020e-3770.10LETM1 domain-containing protein n=2 Tax=Guillardia... [more]
A0A7J7ICI1_9RHOD8.790e-3758.10LETM1 domain-containing protein n=1 Tax=Cyanidioco... [more]
A0A7S2XTH3_9STRA1.670e-3666.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3E6R9_9RHOD5.310e-3662.89Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70282contigH-elongata_contig70282:1453..3222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue9.4e-47
Seed eggNOG ortholog2880.D8LP03
EggNOG free text desc.calcium export from the mitochondrion
EggNOG OGsKOG1043@1,KOG1043@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size315
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70282.14685.1prot_H-elongata_contig70282.14685.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70282 1453..3222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.0078192-CDS-H-elongata_contig70282:1452..15721622931101.0078192-CDS-H-elongata_contig70282:1452..1572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70282 1453..1572 +
1691679698.3541265-CDS-H-elongata_contig70282:1452..15721691679698.3541265-CDS-H-elongata_contig70282:1452..1572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70282 1453..1572 +
1622931101.0252154-CDS-H-elongata_contig70282:2366..24721622931101.0252154-CDS-H-elongata_contig70282:2366..2472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70282 2367..2472 +
1691679698.363457-CDS-H-elongata_contig70282:2366..24721691679698.363457-CDS-H-elongata_contig70282:2366..2472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70282 2367..2472 +
1622931101.0402966-CDS-H-elongata_contig70282:3133..32221622931101.0402966-CDS-H-elongata_contig70282:3133..3222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70282 3134..3222 +
1691679698.3712354-CDS-H-elongata_contig70282:3133..32221691679698.3712354-CDS-H-elongata_contig70282:3133..3222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70282 3134..3222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70282.14685.1

>prot_H-elongata_contig70282.14685.1 ID=prot_H-elongata_contig70282.14685.1|Name=mRNA_H-elongata_contig70282.14685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVR
TLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDR
RQNLL
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mRNA from alignment at H-elongata_contig70282:1453..3222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70282.14685.1 ID=mRNA_H-elongata_contig70282.14685.1|Name=mRNA_H-elongata_contig70282.14685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1770bp|location=Sequence derived from alignment at H-elongata_contig70282:1453..3222+ (Himanthalia elongata Himel1 dioecious)
AGGTACGTGCGAGAAACGTACGATAAAATCAAGAATGGGGTCGACTTCTA CTGGACGGGGACCAAGATATTGGGAAGCGACGTCGGCTACGCCCTCACGC TCGTCTCCAAGGCTGCCCAGGTGTAAGCTACGGGACTGGGCTGAACCGGG CCGGGGGCGGGAGCGGGGGCATGAATGAGAGCGATTTGCAATAAAACAGC ATTTTTTCCAAGCTGTTGTGACAAACCAAACGTTTGCCAATGTATTTGTT CGCACGCCACTCGCGGGGTGGCAATATATAATCTATAGGCTCTATAATAT ATATATATATAATATAGACTATAATATATGGAAGATATATAGAAGATATT CATCTCGTTCTTGCTTTGTTTATCCTTCCTGGAGAAGAGACGGCAATGTG GCAAACAAACCACAAAAACACGGGTGTCGTTGGTGAGTGTCCGAACAAGT GTACCGCGCTGGGGAGGGTTTTCCCCCGCTCTACGACGCTGCTTGGTGCC TTCATCCTTAAGAAATGTACGAAATATTTTTTCTTCCGGCACTATTAATA GACCAATGATGTATTCCCACCACTTTTACGAAACAGGCGTAAAGATAGGG ACAAGAGTGGGATCGATCTCGCTGGGAGACAGGCGTTTGCTTCTTAGATT CCAAACAATGCATAAGAAATAAAATGGCGAGCGCCAGCTGTGTCGACGAA AAAGCGTTGATTCTCAACTCCGCCTCCGCCTGGGTGTGGCAATAATATCG ACGCTAATGCCGAAAGAGCCCACTAGACGATAATGTCAAGGACGCACCCA CTTTTATTTTTTTAGATATATATATTTTTCTTTCCGTCTATGGTTTCCCT TTTCCCGTCCCCCGTCCCCCGTCCCCCGTCCCCCGTCCCCGTCCCCTTCC CGTCCTCCTGGCAGGGGTCGATCCTGAAGCCTCGCGAGGTGCGGACGCTG CGGCGCACGGCGAAGGACTGTTTGACGTTCATTCCCTTTGTGGTGATCCT TATCTTCCCCTTGACTCCCGGTAATAACACTGGCAACAACCCCTGAACCG CGCCTCACACTCAAAACTACATCATCGGATGACTTGCCCGTTCTCACAAA AGCCTGGTGCGCGCGCGTTCTTTGATGAGTCGATTGAAGGTTGGGGCAGG GCAGAAGCGGTAGATAGTGCCGTCGACTCCCCGAGTAATAATAGCTGTAC TCTTGAATTTTGGAAGGCATATTTTTTTAGTGTTCGATGGGGTTCGCGGG GGAGAGAAATCTTCACGAAGAAAATGGACTCGATCTTTACTTTTAGTCTC GATCGTTCATTAGACACAGAAAGTATCGATTGTTCTCGCTGCAGCCTCCC TCCATCGATCGTTCTCTTTTCTTACACAAACGCTGACTCTCAACAATTCG CTGTGTTTTCTTGACCAGCAGGCGGGTTGTGACTTCCGATTTTGTCGGAT CGGCATCGCGCATTACGATCCACGATGCCGCCTCCTCATTTTCCCGTTTG TGCGCTGCCAACAAAACAAGAAAACAATCAAAACGAAATGAAATAAAAAA AAATGAAAAAAATGAAAAAAACTACCCGAACCAACGATTTACGGCCTATG GTCAACACGCCGTCGCGGCGTACTGTCTTCGTGAATGTGATCGGGCGGAT CTGGGGTGATGGCTTCCCGCGCCCTGTACAGTCGGGCACGTGCTGGTGTT CTCCTTCATCCAGAGATTCTTCCCGGACTTTTTTCCTTCCACCTACACCG ACCGCCGACAAAACCTCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig70282:1453..3222+

>mRNA_H-elongata_contig70282.14685.1 ID=mRNA_H-elongata_contig70282.14685.1|Name=mRNA_H-elongata_contig70282.14685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig70282:1453..3222+ (Himanthalia elongata Himel1 dioecious)
AGGTACGTGCGAGAAACGTACGATAAAATCAAGAATGGGGTCGACTTCTA
CTGGACGGGGACCAAGATATTGGGAAGCGACGTCGGCTACGCCCTCACGC
TCGTCTCCAAGGCTGCCCAGAGGTACGTGCGAGAAACGTACGATAAAATC
AAGAATGGGGTCGACTTCTACTGGACGGGGACCAAGATATTGGGAAGCGA
CGTCGGCTACGCCCTCACGCTCGTCTCCAAGGCTGCCCAGGGGTCGATCC
TGAAGCCTCGCGAGGTGCGGACGCTGCGGCGCACGGCGAAGGACTGTTTG
ACGTTCATTCCCTTTGTGGTGATCCTTATCTTCCCCTTGACTCCCGGGGT
CGATCCTGAAGCCTCGCGAGGTGCGGACGCTGCGGCGCACGGCGAAGGAC
TGTTTGACGTTCATTCCCTTTGTGGTGATCCTTATCTTCCCCTTGACTCC
CGTCGGGCACGTGCTGGTGTTCTCCTTCATCCAGAGATTCTTCCCGGACT
TTTTTCCTTCCACCTACACCGACCGCCGACAAAACCTCCTCTCGGGCACG
TGCTGGTGTTCTCCTTCATCCAGAGATTCTTCCCGGACTTTTTTCCTTCC
ACCTACACCGACCGCCGACAAAACCTCCTC
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