mRNA_H-elongata_contig70282.14685.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE) HSP 1 Score: 198 bits (504), Expect = 1.640e-57 Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 1
Query: 1 RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
RY +ETYDKIK+GVDFYWTGTKILG+DVGYALTLVSKA QGSIL PREVRTLRRTAKDC+TFIPFVVILIFPLTPVGHVLVFSFIQRFFP+FFPSTYTDRRQNLL
Sbjct: 648 RYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVVILIFPLTPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLL 752
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI) HSP 1 Score: 193 bits (490), Expect = 1.760e-56 Identity = 93/105 (88.57%), Postives = 101/105 (96.19%), Query Frame = 1
Query: 1 RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
RY +ETYDKIK+G+DFYWTGTKILG+DVGYALTLVSKA QGSIL PREVRTLRRTAKDC+TFIPFV+ILI PL+PVGHVLVFSFIQRFFP+FFPSTYTDRRQNLL
Sbjct: 465 RYAKETYDKIKSGLDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVIILIIPLSPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLL 569
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA) HSP 1 Score: 157 bits (396), Expect = 2.390e-45 Identity = 76/105 (72.38%), Postives = 90/105 (85.71%), Query Frame = 1
Query: 1 RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
RYVRET +K+++ +DFY TGTK+LG D+ YAL LV KA QG LKPREVRTLRR+ KD LT IP ++ILI PL+PVGHVLVFSFIQR+FPDFFPST+T+RRQNLL
Sbjct: 157 RYVRETVEKLRSALDFYVTGTKLLGQDIQYALALVGKAIQGYTLKPREVRTLRRSGKDLLTLIPTIIILILPLSPVGHVLVFSFIQRYFPDFFPSTFTERRQNLL 261
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.790e-40 Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 1
Query: 4 YVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNL 312
YV+++ KIKNGV FY TG K+L SD+ YA L+S+AAQG LKPREVRTL+RTAKD LT IPF +ILIFPLTP+GHVLVFS IQR FPDFFPST+T+RRQNL
Sbjct: 602 YVQDSIGKIKNGVSFYVTGAKLLTSDLQYAWWLISRAAQGYTLKPREVRTLQRTAKDLLTLIPFTIILIFPLTPIGHVLVFSLIQRIFPDFFPSTFTERRQNL 704
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7S2SGM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGM0_9STRA) HSP 1 Score: 140 bits (352), Expect = 3.830e-38 Identity = 65/99 (65.66%), Postives = 83/99 (83.84%), Query Frame = 1
Query: 19 YDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
+ K++ G+ FY TGT++LG D+ YA++L+ KA QG+ L PRE RTLRRTAKD +T +PFV+IL+ PL+PVGHVLVFSFIQR FPDF PSTYT+RRQNL+
Sbjct: 242 WSKLQAGLSFYTTGTRLLGDDLNYAVSLLGKAVQGTTLAPREARTLRRTAKDLVTLVPFVIILLIPLSPVGHVLVFSFIQRVFPDFMPSTYTERRQNLM 340
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7S2X822_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2X822_9EUKA) HSP 1 Score: 133 bits (335), Expect = 1.240e-37 Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 1
Query: 10 RETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
++T K+K + FY GTK+LG+D+ YAL L+++A G LKPRE R L+RTAKD LT +PF +IL+ PLTPVGHVLVFS IQ+FFPDF+PS YT+RRQNL+
Sbjct: 62 KDTVTKLKMALSFYVLGTKLLGNDIQYALWLIARAIDGDTLKPREARMLQRTAKDLLTLLPFTIILLIPLTPVGHVLVFSAIQKFFPDFYPSPYTERRQNLV 163
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: L1IDU4_GUITC (LETM1 domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IDU4_GUITC) HSP 1 Score: 141 bits (355), Expect = 7.020e-37 Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 1
Query: 25 KIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
K +G FY G+K+LG+DV YA+ L+ KAA G L+PREVRTLRRTAKD +TFIPF++IL+ PL+PVGHVLVFSFIQRFFPDFFP+ YTDRRQNL+
Sbjct: 590 KFADGARFYVEGSKLLGTDVQYAVRLIIKAALGDTLQPREVRTLRRTAKDLITFIPFIIILLIPLSPVGHVLVFSFIQRFFPDFFPTPYTDRRQNLM 686
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7J7ICI1_9RHOD (LETM1 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ICI1_9RHOD) HSP 1 Score: 134 bits (336), Expect = 8.790e-37 Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query: 1 RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
+Y+ E K K G +FYW G ++LG D+ Y L L+ +AA G L PREVRT+RRT +D LT +PF ++L PLTPVGHV+VFSFIQR+FP FFPST+TD+RQ L+
Sbjct: 55 QYLAEMSQKTKEGGEFYWRGVRLLGGDIMYTLRLIQRAAAGYTLTPREVRTIRRTGRDILTLVPFGILLALPLTPVGHVMVFSFIQRYFPSFFPSTFTDKRQELM 159
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7S2XTH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTH3_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.670e-36 Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 1
Query: 4 YVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNL 312
+VRE + KI+ GV F+ G K+ G D YA LV++AA G L+PREVRTLRRT KD T IP +ILI PL+PVGHVLVFSFIQRFFPDFFPS++TDRRQNL
Sbjct: 195 FVRENFQKIQEGVAFFVLGLKLFGQDAQYAGWLVTRAAGGYTLQPREVRTLRRTVKDLFTLIPCAIILIIPLSPVGHVLVFSFIQRFFPDFFPSSFTDRRQNL 297
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Match: A0A7S3E6R9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E6R9_9RHOD) HSP 1 Score: 132 bits (332), Expect = 5.310e-36 Identity = 61/97 (62.89%), Postives = 79/97 (81.44%), Query Frame = 1
Query: 25 KIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRTLRRTAKDCLTFIPFVVILIFPLTPVGHVLVFSFIQRFFPDFFPSTYTDRRQNLL 315
K+K G +F++ G ++L DV YA L+ KAA G IL PREVRTLRRT +D ++FIPF +IL+ PLTP+GHVLVFSFIQRFFPDFFP+T+++RRQ L+
Sbjct: 124 KMKEGTEFFFRGLRLLAGDVAYAFRLIRKAAVGFILSPREVRTLRRTGRDLISFIPFSIILLLPLTPIGHVLVFSFIQRFFPDFFPTTFSERRQQLM 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70282.14685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70282.14685.1 >prot_H-elongata_contig70282.14685.1 ID=prot_H-elongata_contig70282.14685.1|Name=mRNA_H-elongata_contig70282.14685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp RYVRETYDKIKNGVDFYWTGTKILGSDVGYALTLVSKAAQGSILKPREVRback to top mRNA from alignment at H-elongata_contig70282:1453..3222+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70282.14685.1 ID=mRNA_H-elongata_contig70282.14685.1|Name=mRNA_H-elongata_contig70282.14685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1770bp|location=Sequence derived from alignment at H-elongata_contig70282:1453..3222+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70282:1453..3222+ >mRNA_H-elongata_contig70282.14685.1 ID=mRNA_H-elongata_contig70282.14685.1|Name=mRNA_H-elongata_contig70282.14685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig70282:1453..3222+ (Himanthalia elongata Himel1 dioecious)back to top |