mRNA_H-elongata_contig69993.14647.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69993.14647.1
Unique NamemRNA_H-elongata_contig69993.14647.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A4D9CZK4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZK4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.950e-9
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   10 WAELRRVYEDRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
            + E  RV  D   +TA+ FDP EELLW G  +GRL++  QP M KH SV AH
Sbjct:   23 YMETHRVPSDGYPITALAFDPIEELLWVGTGNGRLSALAQPGMQKHVSVRAH 74          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: W7UB57_9STRA (Pab-dependent poly-specific ribonuclease subunit 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UB57_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.080e-9
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   10 WAELRRVYEDRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
            + E  RV  D   +TA+ FDP EELLW G  +GRL++  QP M KH SV AH
Sbjct:   34 YMETHRVPSDGYPITALAFDPIEELLWVGTGNGRLSALAQPGMQKHVSVRAH 85          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: UPI0009E1A162 (PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1A162)

HSP 1 Score: 52.0 bits (123), Expect = 4.260e-6
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 1
Query:    1 RNGWAELRRVYE---DRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
            R  + E+R V+    D + V+AV FDP EEL+W G+  G L SY  P + K++S   H
Sbjct:   11 REEYQEIRSVFSTGRDHSGVSAVLFDPLEELVWTGNQSGYLASYFGPELQKYTSFKVH 68          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A2G8KPQ5_STIJA (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KPQ5_STIJA)

HSP 1 Score: 51.6 bits (122), Expect = 5.850e-6
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   10 WAELRRVYEDRA---AVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
            + EL+ V+ D     +V+A+ FDPFEELLW G+  G +TSY    + K+SS  AH
Sbjct:   59 YQELQTVFADGGTTFSVSALYFDPFEELLWMGNQGGHVTSYYGSHLQKYSSFQAH 113          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A8J4PLR3_9MYCE (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLR3_9MYCE)

HSP 1 Score: 51.2 bits (121), Expect = 8.030e-6
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   10 WAELRRVYED-----RAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAHK 168
            W E+R V E      + A+T+V+FDP+EEL+W G+ +G++TS + P + ++SS    K
Sbjct:  111 WFEMRVVPEYPTSNVQNAITSVKFDPWEELVWVGYQNGKVTSMVHPTLDRYSSFFTDK 168          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A0D8XG07_DICVI (Exonuclease n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XG07_DICVI)

HSP 1 Score: 50.4 bits (119), Expect = 1.500e-5
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 1
Query:   49 VTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAA 162
            +TA+ FDPFEELLW G+  GR+ SY  P+  ++++V A
Sbjct:   33 ITALRFDPFEELLWCGNCTGRIASYYAPSFERYTAVCA 70          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A1Y2FCA1_PROLT (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FCA1_PROLT)

HSP 1 Score: 49.3 bits (116), Expect = 3.840e-5
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1
Query:   16 ELRRVYEDRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAHK 168
            + R  +   +A+TAV+FD  EEL+W G+  GRL SY  P + K++   AH+
Sbjct:   27 QSRAPHTPHSALTAVQFDTDEELIWTGNEQGRLCSYHGPGLQKYTCFRAHQ 77          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A397J055_9GLOM (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J055_9GLOM)

HSP 1 Score: 48.9 bits (115), Expect = 5.250e-5
Identity = 21/58 (36.21%), Postives = 32/58 (55.17%), Query Frame = 1
Query:    4 NGWAELRRVYEDRAAVT----AVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
            +GW E+         +T    A+ FDP++ELLW G  +GR+ SY    M +++S  AH
Sbjct:    2 DGWKEILSACAPHVNITQSISAITFDPYQELLWTGSDNGRVASYFGGGMQRYTSFRAH 59          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A0N4WLZ6_HAEPC (Exonuclease domain-containing protein n=1 Tax=Haemonchus placei TaxID=6290 RepID=A0A0N4WLZ6_HAEPC)

HSP 1 Score: 48.5 bits (114), Expect = 7.130e-5
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   43 AAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAA 162
            A VTA+ FDP+EELLW G+  GR+ SY  P+  ++++V A
Sbjct:   17 APVTALCFDPYEELLWFGNCHGRIASYYAPSFERYTAVCA 56          
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A7I5E8Q4_HAECO (USP domain-containing protein n=1 Tax=Haemonchus contortus TaxID=6289 RepID=A0A7I5E8Q4_HAECO)

HSP 1 Score: 48.5 bits (114), Expect = 7.180e-5
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   43 AAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAA 162
            A VTA+ FDP+EELLW G+  GR+ SY  P+  ++++V A
Sbjct:   36 APVTALCFDPYEELLWFGNCHGRIASYYAPSFERYTAVCA 75          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A4D9CZK4_9STRA7.950e-951.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UB57_9STRA8.080e-951.92Pab-dependent poly-specific ribonuclease subunit 2... [more]
UPI0009E1A1624.260e-641.38PAB-dependent poly(A)-specific ribonuclease subuni... [more]
A0A2G8KPQ5_STIJA5.850e-645.45PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A8J4PLR3_9MYCE8.030e-639.66PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A0D8XG07_DICVI1.500e-550.00Exonuclease n=1 Tax=Dictyocaulus viviparus TaxID=2... [more]
A0A1Y2FCA1_PROLT3.840e-541.18PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A397J055_9GLOM5.250e-536.21PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A0N4WLZ6_HAEPC7.130e-550.00Exonuclease domain-containing protein n=1 Tax=Haem... [more]
A0A7I5E8Q4_HAECO7.180e-550.00USP domain-containing protein n=1 Tax=Haemonchus c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69993contigH-elongata_contig69993:2737..2934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.400438-CDS-H-elongata_contig69993:2736..29341622931097.400438-CDS-H-elongata_contig69993:2736..2934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69993 2737..2934 +
1691679696.7542381-CDS-H-elongata_contig69993:2736..29341691679696.7542381-CDS-H-elongata_contig69993:2736..2934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69993 2737..2934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69993.14647.1prot_H-elongata_contig69993.14647.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69993 2737..2934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69993.14647.1

>prot_H-elongata_contig69993.14647.1 ID=prot_H-elongata_contig69993.14647.1|Name=mRNA_H-elongata_contig69993.14647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
RNGWAELRRVYEDRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHS
SVAAHKHRPAGSARR*
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mRNA from alignment at H-elongata_contig69993:2737..2934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69993.14647.1 ID=mRNA_H-elongata_contig69993.14647.1|Name=mRNA_H-elongata_contig69993.14647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig69993:2737..2934+ (Himanthalia elongata Himel1 dioecious)
CGCAACGGTTGGGCGGAGCTCAGGCGAGTGTACGAGGACAGGGCCGCCGT GACCGCGGTGGAGTTCGATCCCTTCGAAGAGCTTTTGTGGGCTGGGCACA GCGACGGGCGTCTCACTTCCTACCTGCAGCCGGCGATGACCAAGCACTCG TCGGTGGCAGCTCACAAGCACCGACCGGCCGGCTCGGCGCGCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig69993:2737..2934+

>mRNA_H-elongata_contig69993.14647.1 ID=mRNA_H-elongata_contig69993.14647.1|Name=mRNA_H-elongata_contig69993.14647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig69993:2737..2934+ (Himanthalia elongata Himel1 dioecious)
CGCAACGGTTGGGCGGAGCTCAGGCGAGTGTACGAGGACAGGGCCGCCGT
GACCGCGGTGGAGTTCGATCCCTTCGAAGAGCTTTTGTGGGCTGGGCACA
GCGACGGGCGTCTCACTTCCTACCTGCAGCCGGCGATGACCAAGCACTCG
TCGGTGGCAGCTCACAAGCACCGACCGGCCGGCTCGGCGCGCAGGTGACG
CAACGGTTGGGCGGAGCTCAGGCGAGTGTACGAGGACAGGGCCGCCGTGA
CCGCGGTGGAGTTCGATCCCTTCGAAGAGCTTTTGTGGGCTGGGCACAGC
GACGGGCGTCTCACTTCCTACCTGCAGCCGGCGATGACCAAGCACTCGTC
GGTGGCAGCTCACAAGCACCGACCGGCCGGCTCGGCGCGCAGGTGA
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