mRNA_H-elongata_contig69993.14647.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A4D9CZK4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZK4_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 7.950e-9 Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query: 10 WAELRRVYEDRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
+ E RV D +TA+ FDP EELLW G +GRL++ QP M KH SV AH
Sbjct: 23 YMETHRVPSDGYPITALAFDPIEELLWVGTGNGRLSALAQPGMQKHVSVRAH 74
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: W7UB57_9STRA (Pab-dependent poly-specific ribonuclease subunit 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UB57_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 8.080e-9 Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query: 10 WAELRRVYEDRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
+ E RV D +TA+ FDP EELLW G +GRL++ QP M KH SV AH
Sbjct: 34 YMETHRVPSDGYPITALAFDPIEELLWVGTGNGRLSALAQPGMQKHVSVRAH 85
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: UPI0009E1A162 (PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1A162) HSP 1 Score: 52.0 bits (123), Expect = 4.260e-6 Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 1
Query: 1 RNGWAELRRVYE---DRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
R + E+R V+ D + V+AV FDP EEL+W G+ G L SY P + K++S H
Sbjct: 11 REEYQEIRSVFSTGRDHSGVSAVLFDPLEELVWTGNQSGYLASYFGPELQKYTSFKVH 68
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A2G8KPQ5_STIJA (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KPQ5_STIJA) HSP 1 Score: 51.6 bits (122), Expect = 5.850e-6 Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 10 WAELRRVYEDRA---AVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
+ EL+ V+ D +V+A+ FDPFEELLW G+ G +TSY + K+SS AH
Sbjct: 59 YQELQTVFADGGTTFSVSALYFDPFEELLWMGNQGGHVTSYYGSHLQKYSSFQAH 113
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A8J4PLR3_9MYCE (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLR3_9MYCE) HSP 1 Score: 51.2 bits (121), Expect = 8.030e-6 Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 10 WAELRRVYED-----RAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAHK 168
W E+R V E + A+T+V+FDP+EEL+W G+ +G++TS + P + ++SS K
Sbjct: 111 WFEMRVVPEYPTSNVQNAITSVKFDPWEELVWVGYQNGKVTSMVHPTLDRYSSFFTDK 168
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A0D8XG07_DICVI (Exonuclease n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XG07_DICVI) HSP 1 Score: 50.4 bits (119), Expect = 1.500e-5 Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 1
Query: 49 VTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAA 162
+TA+ FDPFEELLW G+ GR+ SY P+ ++++V A
Sbjct: 33 ITALRFDPFEELLWCGNCTGRIASYYAPSFERYTAVCA 70
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A1Y2FCA1_PROLT (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FCA1_PROLT) HSP 1 Score: 49.3 bits (116), Expect = 3.840e-5 Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1
Query: 16 ELRRVYEDRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAHK 168
+ R + +A+TAV+FD EEL+W G+ GRL SY P + K++ AH+
Sbjct: 27 QSRAPHTPHSALTAVQFDTDEELIWTGNEQGRLCSYHGPGLQKYTCFRAHQ 77
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A397J055_9GLOM (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J055_9GLOM) HSP 1 Score: 48.9 bits (115), Expect = 5.250e-5 Identity = 21/58 (36.21%), Postives = 32/58 (55.17%), Query Frame = 1
Query: 4 NGWAELRRVYEDRAAVT----AVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAAH 165
+GW E+ +T A+ FDP++ELLW G +GR+ SY M +++S AH
Sbjct: 2 DGWKEILSACAPHVNITQSISAITFDPYQELLWTGSDNGRVASYFGGGMQRYTSFRAH 59
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A0N4WLZ6_HAEPC (Exonuclease domain-containing protein n=1 Tax=Haemonchus placei TaxID=6290 RepID=A0A0N4WLZ6_HAEPC) HSP 1 Score: 48.5 bits (114), Expect = 7.130e-5 Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 43 AAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAA 162
A VTA+ FDP+EELLW G+ GR+ SY P+ ++++V A
Sbjct: 17 APVTALCFDPYEELLWFGNCHGRIASYYAPSFERYTAVCA 56
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Match: A0A7I5E8Q4_HAECO (USP domain-containing protein n=1 Tax=Haemonchus contortus TaxID=6289 RepID=A0A7I5E8Q4_HAECO) HSP 1 Score: 48.5 bits (114), Expect = 7.180e-5 Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 43 AAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSSVAA 162
A VTA+ FDP+EELLW G+ GR+ SY P+ ++++V A
Sbjct: 36 APVTALCFDPYEELLWFGNCHGRIASYYAPSFERYTAVCA 75 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69993.14647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69993.14647.1 >prot_H-elongata_contig69993.14647.1 ID=prot_H-elongata_contig69993.14647.1|Name=mRNA_H-elongata_contig69993.14647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp RNGWAELRRVYEDRAAVTAVEFDPFEELLWAGHSDGRLTSYLQPAMTKHSback to top mRNA from alignment at H-elongata_contig69993:2737..2934+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69993.14647.1 ID=mRNA_H-elongata_contig69993.14647.1|Name=mRNA_H-elongata_contig69993.14647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig69993:2737..2934+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69993:2737..2934+ >mRNA_H-elongata_contig69993.14647.1 ID=mRNA_H-elongata_contig69993.14647.1|Name=mRNA_H-elongata_contig69993.14647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig69993:2737..2934+ (Himanthalia elongata Himel1 dioecious)back to top |