mRNA_H-elongata_contig69770.14625.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI) HSP 1 Score: 250 bits (639), Expect = 3.970e-74 Identity = 151/323 (46.75%), Postives = 212/323 (65.63%), Query Frame = 1
Query: 1 DLSASFERLSL-AKSDVTIPLLTSYASLSGVSIAGPCVKVGEFVPKANPIPDSYGSTRDYLKAMQAHTQVEFTASIKEGVASAHRKEGGGWISCTCKCGRDCTGPTHVFDLNGTPHPNNDFGSCD---DGHNFNNETWARHIVQIEGQALPALVVTCKCTSSYHRATLWMSL-PEGVTCARYKSSIRMRSLGYVGPFLREYGSAARLLQGNVGSSLLLKTVSAPGRKKGCPSTEGS--FVPANAIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDKNARILVTSIRNQAVDAVSAKVSGFGVLV 948
DL+ + R+S+ A S++ IP L++++S V++AG V+VGE VP A IP ++ + YLKAMQAHTQ EF AS ++GV++A R +GGGW+ TC+ + ++G N G+ D DGHNF + W+RH+V+ E ++ ALVV C + + A L ++ +G+ R+RSLGYVG FLREYGSAA LL+ + SLL V+APG++ PS+ G+ F+P + L+ S VPLN Q+DAVL+LTGGLD++VGPPGTGKSTTIY+I ++R+ R+L+TSIRNQAVDAV+ KV FGVLV
Sbjct: 31 DLTRAMGRMSVRATSNIRIPPLSAFSS-GAVAVAGSAVRVGECVPPAEDIPTNFRTPTAYLKAMQAHTQKEFEASARQGVSNADR-QGGGWLVLTCRPNPRWQDSRLSYYVHGKSE-NGGLGTRDTEEDGHNFKQDPWSRHLVEFEDSSI-ALVVACGEGVTDNEAFLAITPGTDGIPVRSEHLHTRVRSLGYVGSFLREYGSAAELLRRDESDSLL-NAVAAPGQQCTLPSSSGAGTFLPRGQVRTLDTSSVPLNATQKDAVLSLTGGLDLVVGPPGTGKSTTIYHINESRIRAEGRVLITSIRNQAVDAVTEKVDSFGVLV 348
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: A0A6H5JRT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT8_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.720e-33 Identity = 102/257 (39.69%), Postives = 153/257 (59.53%), Query Frame = 1
Query: 1 DLSASFERLSL-AKSDVTIPLLTSYASLSGVSIAGPCVKVGEFVPKANPIPDSYGSTRDYLKAMQAHTQVEFTASIKEGVASAHRKEGGGWISCTCKCGRDCTGPTHVFD---LNGTPHPNNDFGSCD------DGHNFNNETWARHIVQIEGQALPALVVTCKCTSSYHRATLWMSLP--EGVTCARYKSSIRMRSLGYVGPFLREYGSAARLLQGNVGSSLLLKTVSAPGRKKGCPSTEGS--FVPANAIDKLEA 729
DL+ + R+S+ A S++ IP L++++S V++AG V+VGE +P+A IP ++ + YLKAMQAHTQ EF AS ++GV++A R +GGGW+ TC+ P + L+ H ++ G D DGHNF + W+RH+V+ E ++ ALVV C + ++A L + +P +G+ R+RSLGYVG FLREYGSAA LL+ + SLL V+APG+ PS+ G+ F+P + EA
Sbjct: 31 DLTRAMGRMSVRATSNIRIPPLSAFSS-GAVAVAGSAVRVGECIPRAESIPTNFRTPTAYLKAMQAHTQKEFEASARQGVSNADR-QGGGWLLLTCR-------PNPRWQDSCLSYYVHGKSENGGLDTQDTEEDGHNFKQDPWSRHLVEFEDSSI-ALVVACVEGVTDNQAFLAI-VPGADGIPVLSEHLQTRVRSLGYVGSFLREYGSAAELLRRDESDSLL-NAVAAPGQCT-LPSSSGAGTFLPRGQVFGNEA 274
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: A0A2P6TVU4_CHLSO (DNA helicase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVU4_CHLSO) HSP 1 Score: 132 bits (332), Expect = 6.410e-31 Identity = 106/282 (37.59%), Postives = 149/282 (52.84%), Query Frame = 1
Query: 145 IPDSYGSTRDYLKAMQAHTQVEFTASIKEGVASAHRKEG----GGWISCTCKCGRDCTGPTHVFDLNGTPHPNNDFGSCDDGHNFNNETWARHIVQIEGQALPALVVTCKCTSSYHRATLWMSLPEGVTCARYKSSIRMRSLGYVGPFLREYGSAARLLQGNVGSSL------LLKTVSAPGR--KKGCPSTEGSFVPANAIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDKNARILVTSIRNQAVDAVSAKVSGF--GVLV 948
+PD++ S YL AMQ+ +EF ASI++ + A R++ GW + R +G + + D G H F G +F ++W RH+VQ+ L + K M+L V C+ S MR+LG+VGPFL +Y +A L S+L LL V P +G ST +PA A +L +VP+N +QR AV L GGL+II GPPGTGKSTTI+++IDA V +A++LVT RNQAVD+V KV+ G+LV
Sbjct: 101 LPDAFSSDGAYLDAMQSTAALEFQASIRQALEQAEREQRRTGVSGWHEFVPQRSRR-SGGSLLLD-GGESHGTWVFAGHT-GVDFEQDSWGRHLVQVRETGSFHLAIMAKQDDETQEHV--MALLPTVECS---GSASMRTLGFVGPFLAQYEAAQGLRYSLHCSTLPDRTRQLLAAVVRPSTLYSRGAAST---LLPAGA--RLRTDEVPINASQRAAVEALRGGLNIIHGPPGTGKSTTIFHLIDAGVQPDAQVLVTCTRNQAVDSVVDKVARLEGGILV 369
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: E1ZLN5_CHLVA (Expressed protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLN5_CHLVA) HSP 1 Score: 122 bits (305), Expect = 4.470e-27 Identity = 102/299 (34.11%), Postives = 135/299 (45.15%), Query Frame = 1
Query: 112 KVGEFVPKANPIPDSYGSTRDYLKAMQAHTQVEFTASIKEGVASAHRKE--------GGGWISCTCKCGRDCTGPTHVFDLNGTPHPNNDFGSCDDGHNFNNETWARHIVQIEGQALPALVVTCKCTSSYHRATL-----------WMSLPEGVTCARYKSSIRMRSLGYVGPFLREYGSAARLLQGNVGSSL------LLKTVSAPGRKKGCPSTEGSFVPANAIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDKNARILVTSIRNQAVDAVSAKVSG 933
K GE A +PD + S YL MQAHT +EF A+ +ASA + GW+S G + F G P W +H+VQ+ K T SYH A L + LP R + ++MRSLGY+G FL +Y SA L +L +L+ + P R+ S+ G L VP+N QR AV L GGL II GPPGTGKSTTI++I+++RV A++LVT RNQAVDAV K++G
Sbjct: 65 KAGE----AAALPDVHASPEAYLTDMQAHTALEFQAAAAAALASAEGRHPEPAQLWWNFGWVSDAKWRALRTRGQSLDFSDEGEP-------------------WVKHLVQV------------KETDSYHVARLARRDPDSGDDVLVLLPTVEAGGRAREVVQMRSLGYLGSFLLQYTSAQALRYQLRTRTLPPAAQHMLQLAADPTRQL---SSSGQGTLRRGPVHLLTDTVPINAGQRAAVEGLQGGLSIIHGPPGTGKSTTIFHIVESRVQPRAQVLVTCSRNQAVDAVVGKLAG 325
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: A0A812VWA8_9DINO (UPF1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VWA8_9DINO) HSP 1 Score: 71.2 bits (173), Expect = 7.330e-10 Identity = 50/139 (35.97%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 526 RYKSSI--RMRSLGYVGPFLREYGSAARLLQG-NVGSSLLLKTVSAPGRKKGCPSTEGSFVPANAIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDK-NARILVTSIRNQAVDAVSAKVS 930
R+ S I ++R+ +VG ++ Y A LL G + L K V P R+ G++ A L +P+N QR AV L+ L+II GPPGTGKSTTI++++ +R+ ++ +VT + NQA+DAV K++
Sbjct: 162 RFHSDIILKLRAHIFVGDYMNRYRCARELLNGIGLTDPQLEKAVLKPWRQ-----VPGTYTRPGA---LREDLMPINSDQRSAVHGLSSRLEIIHGPPGTGKSTTIFHMLSSRLPSMDSAAIVTCVTNQAIDAVVEKLA 292
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: A0A812Y2V5_9DINO (Upf1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Y2V5_9DINO) HSP 1 Score: 68.6 bits (166), Expect = 4.640e-9 Identity = 50/143 (34.97%), Postives = 79/143 (55.24%), Query Frame = 1
Query: 526 RYKSSI--RMRSLGYVGPFLREYGSAARLLQGNV-GSSL----LLKTVSAPGRKKGCPSTEGSFVPANAIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDK-NARILVTSIRNQAVDAVSAKVS 930
R+ S I ++R+ + G +L Y A LL + G+ L L K V P R+ G++ A L +P+N QR AV L+ L++I GPPGTGKSTTI++++ +R+ ++ +VT + NQA+DAV K++
Sbjct: 98 RFHSEIILKLRAHIFAGDYLNRYRCARELLNAGLNGTGLTDPQLEKAVLKPWRQ-----VPGTYTRRGA---LREDLMPINSDQRSAVQGLSSRLEVIHGPPGTGKSTTIFHMLSSRLPSMDSAAIVTCVTNQAIDAVVEKLA 232
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: A0A813KLK7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KLK7_POLGL) HSP 1 Score: 67.4 bits (163), Expect = 7.800e-9 Identity = 57/191 (29.84%), Postives = 82/191 (42.93%), Query Frame = 1
Query: 412 IVQIEGQALPALVVTCKCTSSYHRATLWMSLPEGVTCARYKSSIRMRSLGYVGPFLREYGSAAR---LLQGNVGSSLL----LKTVSAPGRKKGCPSTEGSFVPAN---------AIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDKNARILVTSIRNQAVDAVSAKVSGF 936
IV G + + C+ S TL P + +R + Y G L G L G+ S LK AP CP E + + A ++ +P+N Q AV+ + ++II GPPGTGKSTTI+++I A + +A +VT I NQAVDAV+ K+ F
Sbjct: 130 IVSSAGGSTLFWITACQVASDTSATTLASRSPR----------VELRGMSYDGDALEHQGDLTLQPLLFAGDFASRFRAARELKVNMAP-----CPQLEQAILDPRTPVLGTYREAHLRMRQDLMPINPDQEAAVIGMRHRVEIIHGPPGTGKSTTIFHMISAHLPTSAAAVVTCICNQAVDAVAEKLKDF 305
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: A0A813HVW6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HVW6_POLGL) HSP 1 Score: 67.4 bits (163), Expect = 1.160e-8 Identity = 57/191 (29.84%), Postives = 82/191 (42.93%), Query Frame = 1
Query: 412 IVQIEGQALPALVVTCKCTSSYHRATLWMSLPEGVTCARYKSSIRMRSLGYVGPFLREYGSAAR---LLQGNVGSSLL----LKTVSAPGRKKGCPSTEGSFVPAN---------AIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDKNARILVTSIRNQAVDAVSAKVSGF 936
IV G + + C+ S TL P + +R + Y G L G L G+ S LK AP CP E + + A ++ +P+N Q AV+ + ++II GPPGTGKSTTI+++I A + +A +VT I NQAVDAV+ K+ F
Sbjct: 158 IVSSAGGSTLFWITACQVASDTSATTLASRSPR----------VELRGMSYDGDALEHQGDLTLQPLLFAGDFASRFRAARELKVNMAP-----CPQLEQAILDPRTPVLGTYREAHLRMRQDLMPINPDQEAAVIGMRHRVEIIHGPPGTGKSTTIFHMISAHLPTSAAAVVTCICNQAVDAVAEKLKDF 333
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: F2U1T9_SALR5 (C3H1-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U1T9_SALR5) HSP 1 Score: 66.6 bits (161), Expect = 1.970e-8 Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 562 YVGPFLREYGSAARLLQGNVGSSLLLKTVSAPGRKKGCPSTEGSFVPANAIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDKNARILVTSIRNQAVDAVSAKV 927
YVG + + A R L S LL V+ P ++ P +F + VP+N AQ+ A+ L ++ + GPPGTGKSTTIY+++ + +D + +VT ++N+AV+AV+ K+
Sbjct: 177 YVGDIIAQ-AQACRALLERGEHSALLTAVADPSQRTVVPYNHRNF----------SEDVPINEAQQTALRALRYNVEAVRGPPGTGKSTTIYHLVKSVLDPSGITIVTCVQNKAVEAVAEKL 287
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Match: A0A1Q9DNL4_SYMMI (Regulator of nonsense transcripts 1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DNL4_SYMMI) HSP 1 Score: 66.6 bits (161), Expect = 2.000e-8 Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1
Query: 541 IRMRSLGYVGPFLREYGSAARLLQG-NVGSSLLLKTVSAPGRKKGCPSTEGSFVPANAIDKLEASQVPLNVAQRDAVLNLTGGLDIIVGPPGTGKSTTIYYIIDARVDKN----ARILVTSIRNQAVDAVSAKVS 930
+++R+ + G ++ Y A LL G + L K V P R+ G++ A L +P+N QR AV L+ L++I GPPGTGKSTTI++++ +R+ +VT + NQA+DAV K++
Sbjct: 176 LKLRAHIFAGDYMNRYRCARELLNGVGLTDPQLEKAVLRPWRQ-----VPGTYTRPGA---LREDLMPINSDQRSAVHGLSSRLEVIHGPPGTGKSTTIFHMLSSRLPSMDAAATAAIVTCVTNQAIDAVVEKLA 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69770.14625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69770.14625.1 >prot_H-elongata_contig69770.14625.1 ID=prot_H-elongata_contig69770.14625.1|Name=mRNA_H-elongata_contig69770.14625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp DLSASFERLSLAKSDVTIPLLTSYASLSGVSIAGPCVKVGEFVPKANPIPback to top mRNA from alignment at H-elongata_contig69770:1093..2770+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69770.14625.1 ID=mRNA_H-elongata_contig69770.14625.1|Name=mRNA_H-elongata_contig69770.14625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1678bp|location=Sequence derived from alignment at H-elongata_contig69770:1093..2770+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69770:1093..2770+ >mRNA_H-elongata_contig69770.14625.1 ID=mRNA_H-elongata_contig69770.14625.1|Name=mRNA_H-elongata_contig69770.14625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig69770:1093..2770+ (Himanthalia elongata Himel1 dioecious)back to top |