mRNA_H-elongata_contig69376.14586.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE) HSP 1 Score: 119 bits (297), Expect = 7.600e-29 Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = -1
Query: 13 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRD-VRMDISRI 333
+++LTM E +IARA PVVK R GG YE HV+S+ QDI + A LPW P ++EI +V++QPP+GGSW GR F V++ARVE AL+ LI ++PAYR V +D++R+
Sbjct: 126 MQNLTMTEEMLIARASPVVKVVRLAGGMHGYEGHVLSMGQDIGEFATRLPWLPTSEEIPVVIVQPPEGGSWAGRNFKVNLARVEGALLYLIRHSPAYRGIVHIDMARL 233
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6H5K2R2_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R2_9PHAE) HSP 1 Score: 114 bits (285), Expect = 2.710e-27 Identity = 53/111 (47.75%), Postives = 76/111 (68.47%), Query Frame = -1
Query: 1 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMDISRIAHLG 333
L LT++E Q+I+ AHP+ + YR PGGQ Y H++++++D+T A +LPW+ + +I I+VI PP GG+W+GR+F VE AL LIANNPAY VR+DI + LG
Sbjct: 41 LMGLTVLEQQLISMAHPIARAYRLPGGQCAYSGHILNVARDVTTFATSLPWQANSDDIPIIVIVPPGGGTWQGREFKALKNCVEIALNWLIANNPAYSSVRIDIENLDRLG 151
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 6.190e-25 Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = -1
Query: 13 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVR--MDISRI 333
L+ LTM E MI+ A PV K R GG Y+ HV+S+ QDI TLPW P + E+ +++IQPPDGGSW GRQF VS+ RV+ AL L+ ++P Y D+R +D+ R+
Sbjct: 22 LRSLTMSEEMMISMAFPVCKVIRLAGGAHGYKGHVLSIGQDIGGFVGTLPWLPNSDEMPVIIIQPPDGGSWAGRQFKVSLERVQRALNYLMLHSPPYMDIRSRIDMDRV 130
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT) HSP 1 Score: 73.2 bits (178), Expect = 4.190e-13 Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = -1
Query: 25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
L+ LT VE +I+R P+++ YRK GGQR Y+ HV++L QDI + LP R +LIV G R FTV +V A++ L NNP ++D+ +D
Sbjct: 191 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKDIEID 290
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT) HSP 1 Score: 71.2 bits (173), Expect = 3.470e-12 Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query: 25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
L+ LT VE +I+R P+++ YRK GGQR Y+ HV++L QDI + LP R +LIV G R FTV +V A++ L NNP ++++ +D
Sbjct: 176 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 275
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT) HSP 1 Score: 71.2 bits (173), Expect = 3.500e-12 Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query: 25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
L+ LT VE +I+R P+++ YRK GGQR Y+ HV++L QDI + LP R +LIV G R FTV +V A++ L NNP ++++ +D
Sbjct: 165 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 264
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT) HSP 1 Score: 71.2 bits (173), Expect = 3.920e-12 Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query: 25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
L+ LT VE +I+R P+++ YRK GGQR Y+ HV++L QDI + LP R +LIV G R FTV +V A++ L NNP ++++ +D
Sbjct: 333 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 432
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6S7GE38_PARCT (Helitron_like_N domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE38_PARCT) HSP 1 Score: 71.2 bits (173), Expect = 3.930e-12 Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query: 25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
L+ LT VE +I+R P+++ YRK GGQR Y+ HV++L QDI + LP R +LIV G R FTV +V A++ L NNP ++++ +D
Sbjct: 176 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 275
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6S7I194_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I194_PARCT) HSP 1 Score: 71.2 bits (173), Expect = 4.160e-12 Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query: 25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
L+ LT VE +I+R P+++ YRK GGQR Y+ HV++L QDI + LP R +LIV G R FTV +V A++ L NNP ++++ +D
Sbjct: 330 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 429
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A7D9IBF1_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IBF1_PARCT) HSP 1 Score: 70.1 bits (170), Expect = 1.040e-11 Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = -1
Query: 4 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMDISRIAHL 333
L+ LT VE +I+R P+++ YRK GGQR Y+ HV++L QDI + LP R +LIV G R FTV + A++ L NNP ++++ +D I L
Sbjct: 178 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKALEAVLCLKTNNPFFKNIEIDRDGIQSL 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69376.14586.1 >prot_H-elongata_contig69376.14586.1 ID=prot_H-elongata_contig69376.14586.1|Name=mRNA_H-elongata_contig69376.14586.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp MSNARDVHPHVPVGRVVGDKLHQSCFNSSHAHGELAAFPAAAVRRLDDDDback to top mRNA from alignment at H-elongata_contig69376:2756..3088+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69376.14586.1 ID=mRNA_H-elongata_contig69376.14586.1|Name=mRNA_H-elongata_contig69376.14586.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig69376:2756..3088+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69376:2756..3088+ >mRNA_H-elongata_contig69376.14586.1 ID=mRNA_H-elongata_contig69376.14586.1|Name=mRNA_H-elongata_contig69376.14586.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig69376:2756..3088+ (Himanthalia elongata Himel1 dioecious)back to top |