mRNA_H-elongata_contig69376.14586.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69376.14586.1
Unique NamemRNA_H-elongata_contig69376.14586.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 7.600e-29
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = -1
Query:   13 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRD-VRMDISRI 333
            +++LTM E  +IARA PVVK  R  GG   YE HV+S+ QDI + A  LPW P ++EI +V++QPP+GGSW GR F V++ARVE AL+ LI ++PAYR  V +D++R+
Sbjct:  126 MQNLTMTEEMLIARASPVVKVVRLAGGMHGYEGHVLSMGQDIGEFATRLPWLPTSEEIPVVIVQPPEGGSWAGRNFKVNLARVEGALLYLIRHSPAYRGIVHIDMARL 233          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6H5K2R2_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.710e-27
Identity = 53/111 (47.75%), Postives = 76/111 (68.47%), Query Frame = -1
Query:    1 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMDISRIAHLG 333
            L  LT++E Q+I+ AHP+ + YR PGGQ  Y  H++++++D+T  A +LPW+  + +I I+VI PP GG+W+GR+F      VE AL  LIANNPAY  VR+DI  +  LG
Sbjct:   41 LMGLTVLEQQLISMAHPIARAYRLPGGQCAYSGHILNVARDVTTFATSLPWQANSDDIPIIVIVPPGGGTWQGREFKALKNCVEIALNWLIANNPAYSSVRIDIENLDRLG 151          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.190e-25
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = -1
Query:   13 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVR--MDISRI 333
            L+ LTM E  MI+ A PV K  R  GG   Y+ HV+S+ QDI     TLPW P + E+ +++IQPPDGGSW GRQF VS+ RV+ AL  L+ ++P Y D+R  +D+ R+
Sbjct:   22 LRSLTMSEEMMISMAFPVCKVIRLAGGAHGYKGHVLSIGQDIGGFVGTLPWLPNSDEMPVIIIQPPDGGSWAGRQFKVSLERVQRALNYLMLHSPPYMDIRSRIDMDRV 130          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 73.2 bits (178), Expect = 4.190e-13
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = -1
Query:   25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
            L+ LT VE  +I+R  P+++ YRK GGQR Y+ HV++L QDI    + LP R     +LIV      G     R FTV   +V  A++ L  NNP ++D+ +D
Sbjct:  191 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKDIEID 290          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 71.2 bits (173), Expect = 3.470e-12
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query:   25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
            L+ LT VE  +I+R  P+++ YRK GGQR Y+ HV++L QDI    + LP R     +LIV      G     R FTV   +V  A++ L  NNP ++++ +D
Sbjct:  176 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 275          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 71.2 bits (173), Expect = 3.500e-12
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query:   25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
            L+ LT VE  +I+R  P+++ YRK GGQR Y+ HV++L QDI    + LP R     +LIV      G     R FTV   +V  A++ L  NNP ++++ +D
Sbjct:  165 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 264          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT)

HSP 1 Score: 71.2 bits (173), Expect = 3.920e-12
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query:   25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
            L+ LT VE  +I+R  P+++ YRK GGQR Y+ HV++L QDI    + LP R     +LIV      G     R FTV   +V  A++ L  NNP ++++ +D
Sbjct:  333 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 432          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6S7GE38_PARCT (Helitron_like_N domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE38_PARCT)

HSP 1 Score: 71.2 bits (173), Expect = 3.930e-12
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query:   25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
            L+ LT VE  +I+R  P+++ YRK GGQR Y+ HV++L QDI    + LP R     +LIV      G     R FTV   +V  A++ L  NNP ++++ +D
Sbjct:  176 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 275          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A6S7I194_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I194_PARCT)

HSP 1 Score: 71.2 bits (173), Expect = 4.160e-12
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -1
Query:   25 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMD 333
            L+ LT VE  +I+R  P+++ YRK GGQR Y+ HV++L QDI    + LP R     +LIV      G     R FTV   +V  A++ L  NNP ++++ +D
Sbjct:  330 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEID 429          
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Match: A0A7D9IBF1_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IBF1_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 1.040e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = -1
Query:    4 LKDLTMVESQMIARAHPVVKTYRKPGGQRHYEEHVISLSQDITKLAHTLPWRPCTKEILIVVIQPPDGGSWEGRQFTVSVARVEAALV*LIANNPAYRDVRMDISRIAHL 333
            L+ LT VE  +I+R  P+++ YRK GGQR Y+ HV++L QDI    + LP R     +LIV      G     R FTV   +   A++ L  NNP ++++ +D   I  L
Sbjct:  178 LRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIV---RRHGAEDTHRDFTVRRHKALEAVLCLKTNNPFFKNIEIDRDGIQSL 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69376.14586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5K692_9PHAE7.600e-2952.78ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K2R2_9PHAE2.710e-2747.75Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KFJ0_9PHAE6.190e-2548.62ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6S7G3B5_PARCT4.190e-1339.81Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7JXT5_PARCT3.470e-1238.83Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A7D9LMQ1_PARCT3.500e-1238.83Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A7D9LNP2_PARCT3.920e-1238.83Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A6S7GE38_PARCT3.930e-1238.83Helitron_like_N domain-containing protein n=3 Tax=... [more]
A0A6S7I194_PARCT4.160e-1238.83ATP-dependent DNA helicase n=3 Tax=Paramuricea cla... [more]
A0A7D9IBF1_PARCT1.040e-1137.27Helitron_like_N domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69376contigH-elongata_contig69376:2756..3088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.546462-UTR-H-elongata_contig69376:2755..27611622931091.546462-UTR-H-elongata_contig69376:2755..2761Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69376 2756..2761 +
1691679694.2464526-UTR-H-elongata_contig69376:2755..27611691679694.2464526-UTR-H-elongata_contig69376:2755..2761Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69376 2756..2761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.564992-CDS-H-elongata_contig69376:2761..30881622931091.564992-CDS-H-elongata_contig69376:2761..3088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69376 2762..3088 +
1691679694.2698126-CDS-H-elongata_contig69376:2761..30881691679694.2698126-CDS-H-elongata_contig69376:2761..3088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69376 2762..3088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69376.14586.1prot_H-elongata_contig69376.14586.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69376 2762..3088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69376.14586.1

>prot_H-elongata_contig69376.14586.1 ID=prot_H-elongata_contig69376.14586.1|Name=mRNA_H-elongata_contig69376.14586.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MSNARDVHPHVPVGRVVGDKLHQSCFNSSHAHGELAAFPAAAVRRLDDDD
KNFFRAGAPGESMRQLRDVLGEADDMLFVVPLAARFAIGLHDGVGPCDHL
RLHHRQILE
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mRNA from alignment at H-elongata_contig69376:2756..3088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69376.14586.1 ID=mRNA_H-elongata_contig69376.14586.1|Name=mRNA_H-elongata_contig69376.14586.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig69376:2756..3088+ (Himanthalia elongata Himel1 dioecious)
CCCCAGATGAGCAATGCGCGAGATGTCCATCCTCACGTCCCTGTAGGCAG GGTTGTTGGCGATAAGCTACACCAGAGCTGCTTCAACTCTAGCCACGCTC ACGGTGAACTGGCGGCCTTCCCAGCTGCCGCCGTCAGGAGGCTGGATGAC GACGATAAGAATTTCTTTCGTGCAGGGGCGCCAGGGGAGAGTATGCGCCA ACTTCGTGATGTCCTGGGAGAGGCTGATGACATGCTCTTCGTAGTGCCGT TGGCCGCCAGGTTTGCGATAGGTCTTCACGACGGGGTGGGCCCGTGCGAT CATCTGCGACTCCACCATCGTCAAATCCTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig69376:2756..3088+

>mRNA_H-elongata_contig69376.14586.1 ID=mRNA_H-elongata_contig69376.14586.1|Name=mRNA_H-elongata_contig69376.14586.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig69376:2756..3088+ (Himanthalia elongata Himel1 dioecious)
ATGAGCAATGCGCGAGATGTCCATCCTCACGTCCCTGTAGGCAGGGTTGT
TGGCGATAAGCTACACCAGAGCTGCTTCAACTCTAGCCACGCTCACGGTG
AACTGGCGGCCTTCCCAGCTGCCGCCGTCAGGAGGCTGGATGACGACGAT
AAGAATTTCTTTCGTGCAGGGGCGCCAGGGGAGAGTATGCGCCAACTTCG
TGATGTCCTGGGAGAGGCTGATGACATGCTCTTCGTAGTGCCGTTGGCCG
CCAGGTTTGCGATAGGTCTTCACGACGGGGTGGGCCCGTGCGATCATCTG
CGACTCCACCATCGTCAAATCCTTGAGATGAGCAATGCGCGAGATGTCCA
TCCTCACGTCCCTGTAGGCAGGGTTGTTGGCGATAAGCTACACCAGAGCT
GCTTCAACTCTAGCCACGCTCACGGTGAACTGGCGGCCTTCCCAGCTGCC
GCCGTCAGGAGGCTGGATGACGACGATAAGAATTTCTTTCGTGCAGGGGC
GCCAGGGGAGAGTATGCGCCAACTTCGTGATGTCCTGGGAGAGGCTGATG
ACATGCTCTTCGTAGTGCCGTTGGCCGCCAGGTTTGCGATAGGTCTTCAC
GACGGGGTGGGCCCGTGCGATCATCTGCGACTCCACCATCGTCAAATCCT
TGAG
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