mRNA_H-elongata_contig69291.14576.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69291.14576.1
Unique NamemRNA_H-elongata_contig69291.14576.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A6H5L877_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L877_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.240e-54
Identity = 110/233 (47.21%), Postives = 147/233 (63.09%), Query Frame = 2
Query:  380 PAEPNPIHVALTLSHALALCS***DDTVYLLTKYVDG---GEMFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMPIDEEYRRLQSLPDGRKAKSSYCSPETFK-EKAYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAWFA 1066
            P  PN + +A  L           D TVYL+T +V G   GEMF+ ++ D     A    +  L RQ+++G +Y HSKGICHADMSLEN LV+   T+A+IID+GM+  MP +E  +R  S+PDGR+AK SYC PET+K  + YDGVKVDVF+ G M FMM TG  PF  ASRLDRKF+ +V  G+++  +    +  +P  +Q   LL GMM+Y P+ R LP +VL + WFA
Sbjct:  105 PGHPNVVGLAAALED---------DTTVYLVTPFVGGVGSGEMFD-WVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMAQQMPTNEHGQRFMSVPDGRRAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFRRVVFHGDLQGYLADYGMPPLP--DQVFGLLQGMMSYRPEDRPLPVEVLENPWFA 325          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: D8LHX1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX1_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 6.070e-53
Identity = 106/233 (45.49%), Postives = 146/233 (62.66%), Query Frame = 2
Query:  380 PAEPNPIHVALTLSHALALCS***DDTVYLLTKYVDG---GEMFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMPIDEEYRRLQSLPDGRKAKSSYCSPETFK-EKAYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAWFA 1066
            P  PN + +A  L           D TVYL+T +V G   GEMF+ ++ D     A    +  L  Q+++G +Y HSKGICHADMSLEN LV+   T+A++ID+GM+L MP DE  +R  S+PD R+AK SYC PET+K  + YDGVKVD+F+ G M FM+ TG  PF  ASRLDRKF+ +V +G+++  +    + L+P  +   +LL  MM+Y P+ R LP +VL   WFA
Sbjct:  102 PGHPNVVGLAAALQD---------DTTVYLVTPFVGGVGSGEMFD-WVADNYQNPAPEATIMPLLYQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFMIDFGMALQMPTDEAGQRFMSVPDRRRAKRSYCPPETYKGRQPYDGVKVDMFSVGCMGFMLFTGIPPFDYASRLDRKFRKVVFQGDLQGYLADYEMPLLP--DPVFQLLRRMMSYQPENRPLPVEVLEDPWFA 322          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A7S2UUC5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUC5_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.430e-28
Identity = 75/205 (36.59%), Postives = 117/205 (57.07%), Query Frame = 2
Query:  452 DDTVYLLTKYVDGGEMFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMPIDEEY-RRLQSLPDGRKAKSSYCSPETFKEKA-YDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAW 1060
            +D VY +  Y  G E+F+   + GAF   R    R  FR+++ G  Y HS+G+CH D+SLENVLV  ++    IID GM L MP+D+   + L   P G+  K +Y SPE F  K  + G  +D +A G +LF+MLTG  PF  A+ +D +F++ +    + E +    + L P   +A +LL  M+  +P++RL  ++++ H W
Sbjct:  150 EDLVYCVMPYC-GAELFSFVEQQGAFLEDRA---RQYFREILCGTNYLHSRGVCHRDLSLENVLV--SQNTCIIIDMGMCLRMPVDQTTGKHLLINPQGQCGKRNYMSPEIFLNKRPFSGEAIDFWACGIILFIMLTGVPPFETATEVDPRFQM-ISSWRLSEMLSLWEINLSP---EAVDLLSRMLRPNPQERLKYEEIMAHPW 344          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A7S1FQV0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQV0_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.900e-28
Identity = 73/208 (35.10%), Postives = 115/208 (55.29%), Query Frame = 2
Query:  452 DDTVYLLTKYVDGGEMFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLM--PIDEEYRRLQSLP--DGRKAKSSYCSPETFKEKAYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVV-KGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAW 1060
            D  +Y++  + DGGE+F      G F        R  FRQ+++GL +    G+CH D+SLEN++V  T  +  I+D+GM L +  P +E+   L+ L    G   K +Y +PE ++ KA+DG  +D++ TG +LFMMLTG  P+      D  F+ +   K  ++E +    L L P   +A +L+ GM+  DP++RL   QV+ H W
Sbjct:  179 DSHLYMIMPFADGGELFGFIERRGVFPEEEA---RYWFRQILDGLHFLQGSGVCHRDISLENLIV--TGDRVLIMDFGMCLRVASPAEEQNTALRRLMARQGTCGKINYMAPEIYRNKAFDGFSIDLWCTGVVLFMMLTGTQPWERPCD-DIAFRYIAANKSRLQEVLDTWHLTLSP---EAVDLISGMLKEDPRRRLTLQQVMEHEW 377          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A7S1YQ27_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQ27_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.690e-28
Identity = 76/215 (35.35%), Postives = 117/215 (54.42%), Query Frame = 2
Query:  452 DDTVYLLTKYVDGGEMFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMPIDEE-----------YRRLQSLPDGRKAKSSYCSPETFKE-KAYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAW 1060
            D  +Y    +   GE+F     DG F+     + R  FRQL+ GL +    G+CH D+SLEN+L+D+  TK+ IID GM L +P  ++            RRL S P G+  K +Y SPE  +  +++DG  +DV+A G +LF+ML G  PF  A+R D +F++ + KG +   +   +  + P   +A +LL  M+  DPK RL   +++ H W
Sbjct:   10 DKYLYSFMPFCSCGELFGFVDRDGRFSEP---VARFWFRQLINGLCHLQRMGVCHRDLSLENILIDQY-TKSLIIDLGMCLRVPFGDDDGNIMDVSGGTLRRLMS-PQGQCGKPNYISPEVLQNTESFDGFAIDVWAAGIILFIMLVGLPPFEWANREDPRFRM-ITKGGLMRMLTQWQRPISP---EAGDLLQRMLKEDPKDRLSLVEIMDHQW 215          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A7S1DBQ5_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBQ5_CYCTE)

HSP 1 Score: 127 bits (319), Expect = 9.460e-28
Identity = 83/262 (31.68%), Postives = 128/262 (48.85%), Query Frame = 2
Query:  452 DDTVYLLTKYVDGGEMFNIF-----------LEDGAFTRARTKLVRGL----FRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMP--------------IDEEYRRLQSLPDGRKAKSSYCSPETF-KEKAYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAWFAH*VFC*VGLVPAVEPLETQKATVCPLW 1147
            D+ +Y +  Y  GG++F              L D  F +A T++  G     FRQL+ GL +   KG+CH D+SLEN+++D    +  IID GM L +P              + +   RL     G+  K  Y +PE   +E  +DG  +D++A G +LF+ML G  PF  A   D+++   + KGN+KE +    L+L    ++A +LL  M  +DP+KRL   Q+L H W  +  F     VP   P +T+      +W
Sbjct:  206 DEYLYTIMPYCAGGDLFGRVMGNDKTRTDSQLSDKTFDQAGTQVEEGKARLWFRQLLSGLFHLQRKGVCHRDISLENLMIDDENDELKIIDMGMCLRVPYVDLDNEASDRVTDVSDGTERLLMKSQGQGGKLMYMAPEVVAREDVFDGFAIDLWAAGVVLFVMLVGLAPFKWAHPSDKRYAK-IAKGNLKELMSGLHLDL---SDEACDLLQNMFWWDPRKRLTLAQILQHPWVQNKKFAMPATVP---PPKTKPVHSQAIW 460          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A7S2P167_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P167_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.360e-27
Identity = 78/216 (36.11%), Postives = 112/216 (51.85%), Query Frame = 2
Query:  461 VYLLTKYVDGGEMFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMPIDEE------------YRRLQSLPDGRKAKSSYCSPETFKE-KAYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAWFAH 1069
            +Y    Y  GGE+F+    DG F      L R  FRQL++G+ +    GICH DMSLENVLVD     A +ID GM L +P  ++             RRL   P G+  K +Y SPE  +  + +DG  VDV+A G +LF ML G  P+  A++ D +FK++ + G + E +      + P    A +LL G++   P+ RL   Q++ H W  H
Sbjct:  173 LYSFMPYCSGGELFSYVQRDGRFPEP---LARFWFRQLVQGIFHLQKAGICHRDMSLENVLVDGNN--AVVIDLGMCLRIPFSDDDTGGVTDVTAYTLRRLMP-PQGQCGKPNYMSPEVLENSEPFDGFGVDVWAVGIILFTMLVGLPPWDWATKEDLRFKMIAIDGQLGEMLRQWGRSVSPL---ATDLLQGILRAHPRDRLTFGQIMDHEWVIH 379          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A7S2KZ52_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KZ52_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.390e-27
Identity = 71/208 (34.13%), Postives = 120/208 (57.69%), Query Frame = 2
Query:  452 DDTVYLLTKYVDGGEMFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMPIDEEYRR----LQSLPDGRKAKSSYCSPETFKEK-AYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAW 1060
            +D +Y++  +   GE+F++  ++ +F   +T   R + +Q++ G+K  H  GICH D+SLENVL+     +  IID+G+ L +P  E  RR    ++  P G+  K  Y +PE ++   A++   +DV++ G+MLFMMLT + P+   S  D  F +  ++G ++E I    L+L    ++  +L+ GMM  DP+KRL   +VL H W
Sbjct:  187 EDNLYIVMPFCRDGELFDLVSDNASFDEIQT---RSIMKQILVGVKAMHDAGICHRDLSLENVLLHEGNCQ--IIDFGLCLRVPQHEGLRRDTKSIRMKPQGKCGKLFYMAPEIYENTDAFNPYAIDVWSLGAMLFMMLTSSPPYDRPSPTDDMF-VWFMRGEMEEIIKAWGLQL---SSEVIDLMSGMMCVDPEKRLTLSEVLEHPW 385          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A1E7FBI2_9STRA (Ser/thr kinase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBI2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.240e-26
Identity = 74/210 (35.24%), Postives = 115/210 (54.76%), Query Frame = 2
Query:  452 DDTVYLLTKYVDGGEMFNIFL----EDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMPIDEEYRRLQSL--PDGRKAKSSYCSPETFKE-KAYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAW 1060
            D+ ++ +  Y  GG++F + +    E G        + R  FRQ++ GL++  S G+CH D+SLENVLV  +     IID GM L +P    YR ++ L  P G   K +Y SPE F    A+DG  +D++A G +L++MLTG  P+  AS+ D++F L +V GN+   +    + L   G    +LL  M+  DP+ RL   +++ H W
Sbjct:   36 DEYLFTVMPYCSGGDLFGVVVKYAEESGGEIGMPEPVARFWFRQILLGLQHLQSVGVCHRDLSLENVLV--SSENCLIIDMGMCLRVP----YRTIRRLIKPQGVCGKHNYMSPEIFANTNAFDGFSIDLWAAGVILYIMLTGFPPYDQASQTDQRFDL-IVNGNLIRQLESWDIRLSQNGG---DLLQSMLQVDPRDRLTLAEIMAHPW 235          
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Match: A0A7S2N0N2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0N2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.270e-26
Identity = 79/213 (37.09%), Postives = 116/213 (54.46%), Query Frame = 2
Query:  461 VYLLTKYVDGGEMFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLVDRTRTKAYIIDYGMSLLMPI---DEE---------YRRLQSLPDGRKAKSSYCSPETFKEK-AYDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGPNRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAW 1060
            +Y    +   GE+F     DG FT   T   R  FRQL+ GL +    G+CH D+SLEN+LVD+  TK+ IID GM L +P    D++          RRL + P G+  K +Y SPE  K   ++DG  +DV+A G +LF+ML G  PF  A+R D +F+++   G ++      R    P   +A +LL  M+  DP++RL   +++ HAW
Sbjct:  170 LYSFMPFCTCGELFGYVDRDGRFTEPVT---RWWFRQLINGLYHLQKMGVCHRDLSLENILVDQY-TKSLIIDMGMCLRVPFGGDDDDSITDVSAGTLRRLMT-PQGQCGKPNYISPEVLKNTDSFDGFAIDVWAAGIILFIMLVGLPPFEWANREDPRFRMITGGGLMRMLTQWQR----PISPEAGDLLQRMLREDPRERLSLVEIMDHAW 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69291.14576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L877_9PHAE1.240e-5447.21Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHX1_ECTSI6.070e-5345.49N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A7S2UUC5_9STRA1.430e-2836.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1FQV0_9STRA1.900e-2835.10Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1YQ27_9STRA4.690e-2835.35Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1DBQ5_CYCTE9.460e-2831.68Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S2P167_9STRA3.360e-2736.11Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2KZ52_9STRA6.390e-2734.13Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7FBI2_9STRA1.240e-2635.24Ser/thr kinase n=1 Tax=Fragilariopsis cylindrus CC... [more]
A0A7S2N0N2_9STRA2.270e-2637.09Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69291contigH-elongata_contig69291:103..3256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue8e-20
Seed eggNOG ortholog67593.Physo141834
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs3QD6A@4776,KOG0583@1,KOG0583@2759
EC2.8.1.8
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size1884
Cds size576
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.964663-UTR-H-elongata_contig69291:102..5981622931089.964663-UTR-H-elongata_contig69291:102..598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69291 103..598 +
1691679693.6874645-UTR-H-elongata_contig69291:102..5981691679693.6874645-UTR-H-elongata_contig69291:102..598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69291 103..598 +
1622931090.1357777-UTR-H-elongata_contig69291:2444..32561622931090.1357777-UTR-H-elongata_contig69291:2444..3256Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69291 2445..3256 +
1691679693.7516243-UTR-H-elongata_contig69291:2444..32561691679693.7516243-UTR-H-elongata_contig69291:2444..3256Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69291 2445..3256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.980676-CDS-H-elongata_contig69291:598..6911622931089.980676-CDS-H-elongata_contig69291:598..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 599..691 +
1691679693.6998043-CDS-H-elongata_contig69291:598..6911691679693.6998043-CDS-H-elongata_contig69291:598..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 599..691 +
1622931090.002356-CDS-H-elongata_contig69291:927..10611622931090.002356-CDS-H-elongata_contig69291:927..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 928..1061 +
1691679693.7105234-CDS-H-elongata_contig69291:927..10611691679693.7105234-CDS-H-elongata_contig69291:927..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 928..1061 +
1622931090.0182176-CDS-H-elongata_contig69291:1543..16131622931090.0182176-CDS-H-elongata_contig69291:1543..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 1544..1613 +
1691679693.722903-CDS-H-elongata_contig69291:1543..16131691679693.722903-CDS-H-elongata_contig69291:1543..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 1544..1613 +
1622931090.081765-CDS-H-elongata_contig69291:1956..21421622931090.081765-CDS-H-elongata_contig69291:1956..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 1957..2142 +
1691679693.731355-CDS-H-elongata_contig69291:1956..21421691679693.731355-CDS-H-elongata_contig69291:1956..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 1957..2142 +
1622931090.124297-CDS-H-elongata_contig69291:2351..24441622931090.124297-CDS-H-elongata_contig69291:2351..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 2352..2444 +
1691679693.7395363-CDS-H-elongata_contig69291:2351..24441691679693.7395363-CDS-H-elongata_contig69291:2351..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69291 2352..2444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69291.14576.1prot_H-elongata_contig69291.14576.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69291 599..2444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69291.14576.1

>prot_H-elongata_contig69291.14576.1 ID=prot_H-elongata_contig69291.14576.1|Name=mRNA_H-elongata_contig69291.14576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MFNIFLEDGAFTRARTKLVRGLFRQLMEGLKYTHSKGICHADMSLENVLV
DRTRTKAYIIDYGMSLLMPIDEEYRRLQSLPDGRKAKSSYCSPETFKEKA
YDGVKVDVFATGSMLFMMLTGAYPFAIASRLDRKFKLLVVKGNVKETIGP
NRLELMPRGNQAAELLGGMMAYDPKKRLLPDQVLHHAWFAH*
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mRNA from alignment at H-elongata_contig69291:103..3256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69291.14576.1 ID=mRNA_H-elongata_contig69291.14576.1|Name=mRNA_H-elongata_contig69291.14576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3154bp|location=Sequence derived from alignment at H-elongata_contig69291:103..3256+ (Himanthalia elongata Himel1 dioecious)
GTCGTTATTTCTCCTCGCGGTGTTGCTGGCGGCGTGGGTCGACATATGTT TTAATGGCTCAGTGGATTCTCTTGTGGGAGAGTCGATTCAGAGCGCATGA CGCCGGAAAGCGCAAACCGTCGAGATGAGAGGACGGAGACTCTTGGCGTA GCAGCGGCGAGGGATAGCTCAATGTTCATGAGGTCATCGATATCCCCCCT TTCCCCCGGGTATTTTGTGACGGTTTTCTCGCGACGCCCCCATGGAGGAT AAGGTAGCGTCACGTTCGTGCTTGATCTCAGATAAAGTTCCCGGCGGCCG TGGAGTTGTCCTTACAAGACCCCCCCCCCCCGCCGTCTCTCGGGTTCGAA GAGCGCAGGGCTATTTTGGTACATCGCCGCCTGCTGAACCTAACCCAATC CATGTCGCCCTCACGCTCTCTCACGCTCTTGCCCTTTGTTCTTGATAATA AGATGATACTGTGTACCTGCTGACAAAGTACGTGGATGGAGGGGAGATGT TCAACATTTTTTTGGAAGACGGCGCGTTTACTAGAGCGAGGACGAAACTC GTGCGAGGCCTTTTCCGCCAGCTGATGGAAGGGTTGAAGGTGAGGACGGC TTGGGATCGCTCGATGTTTTAGCTGGGTGAAAATGTCATAATCAGGGCGG CATTCTATTGTAGCTCCATGTTGCTCGCCGTGACGCACAGTAGGCGAATG GGGCAAGGTACGGGTGTCTCTTCATGGCAAATTATTCTGGGATTGTGCAA GGATTATGCCATTTACAAAGATATAAATTCCTGCCTTCGTCCGCCCACTG TAATGTTCGCATCGCACACTTAAAGTACACACACTCCAAGGGCATTTGCC ACGCGGACATGTCCCTGGAGAACGTCTTGGTAGACAGAACGAGGACGAAA GCTTACATCATCGACTACGGCATGTCCCTCCTCATGCCCATCGACGAGGA GTACCGAAGGCAAGGAATAAACTGTTACCGTGTCTGCCGTACGAGGAATT GGTTCTGTGCTGTGAACTCCCGCAGTGCGCAGGCCGTTATTTACACGATG TTGTTTCTTTTCGCTTTGATAGTGGGCTGGTGTAGGTTCTATAATAGTCT TAATACAGGCATAGAAATGAAGCCACAGGGGGGCGTGCTCGAATCGTCAG TGCTGTCCTCTGAGTGAGTGCTACGCGCATTTTTATCAAGGCGTTCAAAT TATTAATTTAAAGTAATTCAAGCGCTTGATCTCAGCGGATGTCGTATGAA ACGCGGTCAAAGAGTGGAAAGGTGTAGAAACCATATTCCATCGATATGAT CACTCTCGAATACGCACAACGCAAAATATTTAAGCATAGGATGCCGAAGA CGTGAAGTGGTCGACGTGGGAGGATATCCCGAAATCGCAGTTATCAAAAT ACGAAGTCATCCTCTCGCGACCTGTCTTGTGTCGGTTCCAGGCTGCAGTC TCTTCCTGACGGCAGGAAGGCCAAGTCTTCTTATTGCAGTCCGGAGACAT TCAAAGAAAAGGTGCGGGCAGCCTCTCAAAACCATTTAGCCTTACAGCTG GTGACTCGTAGCCTGTCAAGAGTAGCGTCGTGTACCACGGCTGCAACGGA TCGGACCGGACCGCTTGAGGTTAGGGTTGGGATAGGGTGGCCTTTTACTT GGTCGACTATCCTAGAACCCGCAATATGCCACTTTTCGACGAAGCTTCCA AACGGTATCTGCCCCGCGGGTGTCACGTTTTCTAATGGGATACAAATAAT GATGTGGGAAATATGCATGCGGCGGGCAGTATCAATTTCTTGTCCTACCA AGGGTGTCCAACGTGCGTTGTGGTCGCGTATCCGCCCCGATGTCTCTTGG GCAGGCGTATGATGGTGTGAAGGTGGACGTGTTCGCAACAGGATCCATGC TCTTCATGATGCTTACTGGCGCTTATCCTTTTGCCATTGCCTCACGGCTT GACCGGAAATTCAAGCTGTTGGTAGTAAAAGGAAACGTGAAAGAGACGAT CGGACCAAACAGGCTGGAGCTTATGCCGAGAGGGAACCAGGTGACACATC TCATCACGAGGTAGCGCCCGTCCCAACGACTTATCGTTCAGAATGCAGCG GAGAAGTTCGGTTCCGGTTTACGACACTTTACAGCACCGAGGAGCTTAGT GCTTCACCCTCCTCCCCTGCGCCGTGAAAACATTGCATTGCGCGCTTGTT CGTCGTTTTACTCTTCCTGCGCAAACGAACTTTGACCTACTTTACACAGG CGGCGGAACTGTTGGGAGGGATGATGGCGTACGATCCTAAAAAAAGGCTT CTGCCAGATCAGGTGCTGCACCACGCTTGGTTCGCACACTGAGTATTTTG CTGAGTAGGCCTAGTGCCGGCTGTGGAACCGCTGGAGACACAGAAAGCTA CCGTCTGTCCGTTGTGGTAAAACGACAATGGTGACGGGTCTCGTCCGCAT GTGACTGATAGGCACGACCGTCGCAGAAATAGTACACGTGGTTAGCAAAA CGACATATTATTTGTTCGTTGTAGTGAAGCCGATGCTGAGGTGCAGAGAC GGGTAGCGTTTGTGCCGCAACAACAAAAAGTATCGTTTCCTGCTGCTTTT TTTGCGCGGTGCGCTTGTCGTGAGCGTTGGACGTGCCACCGACAGGAGAT TCGTCGCTAGCTGTATATCTCGGCGACCGCTTGGAAGTTCACATGAAATA AAAATACGGTAGCGTGATTTGGCACACCGCGCCGTCCGACCATCGCTGAT GAGTTCAGTTTGATAAGAAGATTTGCCACCCTTTATGTTATTGATATATT AACTGCACAATGTTTCCAGCACGAAGATAAGAGGGCGTGACGTTTTATGC GATAAGATAGGAGTTGTAGAGGCGGAGATATAGAGAAATAAAAAAGAGAA GGCCGCAGACTAAGGCATTATGACACCCAATATTGTTTTCGATCATATAT GCGCGTCAGCGGCTTGCCCTGTCTTTCACAGAAGCACTGCAGGAGGAAGG ATGGCCGGACTGAGAAGCAGTTAGGTTTTGGATTGGAAACGATAATTCGG TTTCCATGGGTGCATCTGATCATAAAAAAAAAACTCTTGGGGTGCTCTCG AGGTTCGTGTTTGATGCCGTACAAAACCTTTGGTGTTCTCCCTGAATCCG CCTG
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Coding sequence (CDS) from alignment at H-elongata_contig69291:103..3256+

>mRNA_H-elongata_contig69291.14576.1 ID=mRNA_H-elongata_contig69291.14576.1|Name=mRNA_H-elongata_contig69291.14576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig69291:103..3256+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAACATTTTTTTGGAAGACGGCGCGTTTACTAGAGCGAGGACGAA
ACTCGTGCGAGGCCTTTTCCGCCAGCTGATGGAAGGGTTGAAGATGTTCA
ACATTTTTTTGGAAGACGGCGCGTTTACTAGAGCGAGGACGAAACTCGTG
CGAGGCCTTTTCCGCCAGCTGATGGAAGGGTTGAAGTACACACACTCCAA
GGGCATTTGCCACGCGGACATGTCCCTGGAGAACGTCTTGGTAGACAGAA
CGAGGACGAAAGCTTACATCATCGACTACGGCATGTCCCTCCTCATGCCC
ATCGACGAGGAGTACCGAAGTACACACACTCCAAGGGCATTTGCCACGCG
GACATGTCCCTGGAGAACGTCTTGGTAGACAGAACGAGGACGAAAGCTTA
CATCATCGACTACGGCATGTCCCTCCTCATGCCCATCGACGAGGAGTACC
GAAGGCTGCAGTCTCTTCCTGACGGCAGGAAGGCCAAGTCTTCTTATTGC
AGTCCGGAGACATTCAAAGAAAAGGCTGCAGTCTCTTCCTGACGGCAGGA
AGGCCAAGTCTTCTTATTGCAGTCCGGAGACATTCAAAGAAAAGGCGTAT
GATGGTGTGAAGGTGGACGTGTTCGCAACAGGATCCATGCTCTTCATGAT
GCTTACTGGCGCTTATCCTTTTGCCATTGCCTCACGGCTTGACCGGAAAT
TCAAGCTGTTGGTAGTAAAAGGAAACGTGAAAGAGACGATCGGACCAAAC
AGGCTGGAGCTTATGCCGAGAGGGAACCAGGCGTATGATGGTGTGAAGGT
GGACGTGTTCGCAACAGGATCCATGCTCTTCATGATGCTTACTGGCGCTT
ATCCTTTTGCCATTGCCTCACGGCTTGACCGGAAATTCAAGCTGTTGGTA
GTAAAAGGAAACGTGAAAGAGACGATCGGACCAAACAGGCTGGAGCTTAT
GCCGAGAGGGAACCAGGCGGCGGAACTGTTGGGAGGGATGATGGCGTACG
ATCCTAAAAAAAGGCTTCTGCCAGATCAGGTGCTGCACCACGCTTGGTTC
GCACACTGAGCGGCGGAACTGTTGGGAGGGATGATGGCGTACGATCCTAA
AAAAAGGCTTCTGCCAGATCAGGTGCTGCACCACGCTTGGTTCGCACACT
GA
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